RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ARHGEF11O15085 1522 aa12.24□□□□□ -0.45
CCDC88A-202ENST00000336838 FILIP1LQ4L180 1135 aa12.24□□□□□ -0.45
CCDC88A-202ENST00000336838 TXLNAP40222 546 aa12.24□□□□□ -0.45
CCDC88A-202ENST00000336838 CFAP65Q6ZU64 1925 aaKnown RBP12.24□□□□□ -0.45
CCDC88A-202ENST00000336838 NEMFO60524 1076 aa12.24□□□□□ -0.45
CCDC88A-202ENST00000336838 NBPF8Q3BBV2 869 aa12.24□□□□□ -0.45
CCDC88A-202ENST00000336838 RAB11FIP3O75154 756 aa12.23□□□□□ -0.45
CCDC88A-202ENST00000336838 NOB1Q9ULX3 412 aaKnown RBP12.23□□□□□ -0.45
CCDC88A-202ENST00000336838 SH2B1Q9NRF2 756 aaPredicted RBP12.23□□□□□ -0.45
CCDC88A-202ENST00000336838 LEKR1Q6ZMV7 388 aa12.23□□□□□ -0.45
CCDC88A-202ENST00000336838 R3HCC1Q9Y3T6 440 aaKnown RBP12.23□□□□□ -0.45
CCDC88A-202ENST00000336838 KIAA0556O60303 1618 aa12.23□□□□□ -0.45
CCDC88A-202ENST00000336838 WDR62O43379 1518 aa12.22□□□□□ -0.45
CCDC88A-202ENST00000336838 CDCA7LQ96GN5 454 aa12.22□□□□□ -0.45
CCDC88A-202ENST00000336838 ZMYM3Q14202 1370 aa12.22□□□□□ -0.45
CCDC88A-202ENST00000336838 NFXL1Q6ZNB6 911 aa12.22□□□□□ -0.45
CCDC88A-202ENST00000336838 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.22□□□□□ -0.452e-6■□□□□ 8.9
CCDC88A-202ENST00000336838 MYO5CQ9NQX4 1742 aa12.22□□□□□ -0.45
CCDC88A-202ENST00000336838 CCDC112Q8NEF3 446 aa12.22□□□□□ -0.45
CCDC88A-202ENST00000336838 SLC3A2P08195 630 aaKnown RBP12.22□□□□□ -0.45
CCDC88A-202ENST00000336838 ELL2O00472 640 aaPredicted RBP12.21□□□□□ -0.45
CCDC88A-202ENST00000336838 MCM3P25205 808 aa12.21□□□□□ -0.46
CCDC88A-202ENST00000336838 PRKAR2BP31323 418 aa12.21□□□□□ -0.46
CCDC88A-202ENST00000336838 USP8P40818 1118 aa12.21□□□□□ -0.46
CCDC88A-202ENST00000336838 TNMDQ9H2S6 317 aa12.21□□□□□ -0.46
CCDC88A-202ENST00000336838 TBC1D2BQ9UPU7 963 aa12.21□□□□□ -0.46
CCDC88A-202ENST00000336838 ADAMTS12P58397 1594 aa12.21□□□□□ -0.46
CCDC88A-202ENST00000336838 PRPF40AO75400 957 aaKnown RBP12.21□□□□□ -0.46
CCDC88A-202ENST00000336838 CEP57L1Q8IYX8 460 aa12.21□□□□□ -0.46
CCDC88A-202ENST00000336838 PTPRCP08575 1304 aa12.2□□□□□ -0.46
CCDC88A-202ENST00000336838 FSD1Q9BTV5 496 aa12.2□□□□□ -0.46
CCDC88A-202ENST00000336838 SCAND2PQ9GZW5 306 aaPredicted RBP12.2□□□□□ -0.46
CCDC88A-202ENST00000336838 MAST1Q9Y2H9 1570 aa12.2□□□□□ -0.46
CCDC88A-202ENST00000336838 CTAGE5O15320 804 aa12.2□□□□□ -0.46
CCDC88A-202ENST00000336838 HS1BP3Q53T59 392 aa12.2□□□□□ -0.46
CCDC88A-202ENST00000336838 ZSCAN25Q6NSZ9 544 aa12.2□□□□□ -0.46
CCDC88A-202ENST00000336838 STIM1Q13586 685 aa12.2□□□□□ -0.46
CCDC88A-202ENST00000336838 CREBRFQ8IUR6 639 aa12.19□□□□□ -0.46
CCDC88A-202ENST00000336838 OSCARQ8IYS5 282 aa12.19□□□□□ -0.46
CCDC88A-202ENST00000336838 BRPF3Q9ULD4 1205 aa12.19□□□□□ -0.46
CCDC88A-202ENST00000336838 EXOSC9Q06265 439 aaKnown RBP12.19□□□□□ -0.46
CCDC88A-202ENST00000336838 BMP2KLQ5H9B9 411 aa12.19□□□□□ -0.46
CCDC88A-202ENST00000336838 ZNF330Q9Y3S2 320 aaPredicted RBP12.19□□□□□ -0.46
CCDC88A-202ENST00000336838 RTEL1-TNFRSF6BF6WH68 1400 aa12.19□□□□□ -0.46
CCDC88A-202ENST00000336838 SMTNL1A8MU46 457 aa12.19□□□□□ -0.46
CCDC88A-202ENST00000336838 PLEKHO1Q53GL0 409 aaPredicted RBP12.19□□□□□ -0.46
CCDC88A-202ENST00000336838 SAMD9Q5K651 1589 aa12.19□□□□□ -0.46
CCDC88A-202ENST00000336838 CTNNA3Q9UI47 895 aa12.19□□□□□ -0.46
CCDC88A-202ENST00000336838 TULP1O00294 542 aaPredicted RBP12.19□□□□□ -0.46
CCDC88A-202ENST00000336838 PLXNC1O60486 1568 aa12.19□□□□□ -0.46
CCDC88A-202ENST00000336838 APPP05067 770 aa12.19□□□□□ -0.46
CCDC88A-202ENST00000336838 HMGB2P26583 209 aaKnown RBP12.19□□□□□ -0.46
CCDC88A-202ENST00000336838 PSME1Q06323 249 aa12.19□□□□□ -0.46
CCDC88A-202ENST00000336838 PARD3Q8TEW0 1356 aa12.19□□□□□ -0.46
CCDC88A-202ENST00000336838 CCDC183Q5T5S1 534 aa12.19□□□□□ -0.46
CCDC88A-202ENST00000336838 PIK3C2GO75747 1445 aa12.18□□□□□ -0.46
CCDC88A-202ENST00000336838 GTF2E1P29083 439 aaPredicted RBP12.18□□□□□ -0.46
CCDC88A-202ENST00000336838 PCMTD1Q96MG8 357 aaPredicted RBP12.18□□□□□ -0.46
CCDC88A-202ENST00000336838 ZMYM4Q5VZL5 1548 aa12.18□□□□□ -0.46
CCDC88A-202ENST00000336838 ANKRD36BQ8N2N9 1353 aa12.18□□□□□ -0.46
CCDC88A-202ENST00000336838 WASF1Q92558 559 aa12.18□□□□□ -0.46
CCDC88A-202ENST00000336838 ZNHIT6Q9NWK9 470 aaKnown RBP12.18□□□□□ -0.46
CCDC88A-202ENST00000336838 NFE2L2Q16236 605 aa12.18□□□□□ -0.46
CCDC88A-202ENST00000336838 RAPGEF4Q8WZA2 1011 aa12.18□□□□□ -0.46
CCDC88A-202ENST00000336838 VPS37DQ86XT2 251 aa12.18□□□□□ -0.46
CCDC88A-202ENST00000336838 PDCL3Q9H2J4 239 aa12.17□□□□□ -0.46
CCDC88A-202ENST00000336838 TUBB4AP04350 444 aa12.17□□□□□ -0.46
CCDC88A-202ENST00000336838 GBP3Q9H0R5 595 aa12.17□□□□□ -0.46
CCDC88A-202ENST00000336838 TRIM22Q8IYM9 498 aa12.17□□□□□ -0.46
CCDC88A-202ENST00000336838 POGZQ7Z3K3 1410 aa12.17□□□□□ -0.46
CCDC88A-202ENST00000336838 RIC3Q7Z5B4 369 aa12.17□□□□□ -0.46
CCDC88A-202ENST00000336838 LTV1Q96GA3 475 aaPredicted RBP12.17□□□□□ -0.46
CCDC88A-202ENST00000336838 CFAP74Q9C0B2 1584 aa12.17□□□□□ -0.46
CCDC88A-202ENST00000336838 HMGB1P09429 215 aaKnown RBP12.17□□□□□ -0.46
CCDC88A-202ENST00000336838 EIF2S2P20042 333 aaKnown RBP12.17□□□□□ -0.46
CCDC88A-202ENST00000336838 CCDC27Q2M243 656 aa12.17□□□□□ -0.46
CCDC88A-202ENST00000336838 GPATCH8Q9UKJ3 1502 aaKnown RBP12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 SURF6O75683 361 aaKnown RBP12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 MAP3K11Q16584 847 aa12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 CCDC191Q8NCU4 936 aa12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 ERLIN2O94905 339 aa12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 EPS15P42566 896 aa12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 CABP2Q9NPB3 220 aa12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 MAGEC2Q9UBF1 373 aaPredicted RBP12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 TCEAL9Q9UHQ7 104 aa12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 UQCRHLA0A096LP55 91 aa12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 GOLGA6L10A6NI86 522 aa12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 DYNC1I1O14576 645 aa12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 UQCRHP07919 91 aa12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 NUTM2DQ5VT03 806 aaPredicted RBP12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 CAGE1Q8TC20 777 aa12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 ARHGAP45Q92619 1136 aa12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 FAM107BQ9H098 131 aa12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 PRAG1Q86YV5 1406 aa12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 RARSP54136 660 aaKnown RBP12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 HDAC1Q13547 482 aaPredicted RBP12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 STK38Q15208 465 aa12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 UVSSAQ2YD98 709 aa12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 CFAP70Q5T0N1 1121 aa12.16□□□□□ -0.46
CCDC88A-202ENST00000336838 PRIMPOLQ96LW4 560 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms