RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 PSMA5P28066 241 aa12.21□□□□□ -0.45
CHD3-201ENST00000330494 HOOK1Q9UJC3 728 aaKnown RBP12.21□□□□□ -0.45
CHD3-201ENST00000330494 NAIPQ13075 1403 aa12.21□□□□□ -0.45
CHD3-201ENST00000330494 NME9Q86XW9 330 aa12.21□□□□□ -0.46
CHD3-201ENST00000330494 ATF7IPQ6VMQ6 1270 aa12.21□□□□□ -0.46
CHD3-201ENST00000330494 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.21□□□□□ -0.46
CHD3-201ENST00000330494 CUL7Q14999 1698 aa12.21□□□□□ -0.46
CHD3-201ENST00000330494 NAP1L1P55209 391 aaKnown RBP12.21□□□□□ -0.46
CHD3-201ENST00000330494 AACSQ86V21 672 aa12.21□□□□□ -0.46
CHD3-201ENST00000330494 ADAMTS2O95450 1211 aa12.2□□□□□ -0.46
CHD3-201ENST00000330494 TMPOP42166 694 aaKnown RBP12.2□□□□□ -0.46
CHD3-201ENST00000330494 TTLL5Q6EMB2 1281 aa12.2□□□□□ -0.46
CHD3-201ENST00000330494 CAVIN1Q6NZI2 390 aaKnown RBP12.2□□□□□ -0.46
CHD3-201ENST00000330494 PDILTQ8N807 584 aa12.2□□□□□ -0.46
CHD3-201ENST00000330494 CCDC141Q6ZP82 1450 aa12.2□□□□□ -0.46
CHD3-201ENST00000330494 SRGAP3O43295 1099 aa12.2□□□□□ -0.46
CHD3-201ENST00000330494 SRCIN1Q9C0H9 1055 aa12.2□□□□□ -0.46
CHD3-201ENST00000330494 KIAA0586Q9BVV6 1533 aa12.2□□□□□ -0.46
CHD3-201ENST00000330494 RBM5P52756 815 aaKnown RBP eCLIP12.2□□□□□ -0.46
CHD3-201ENST00000330494 CCDC57Q2TAC2 916 aa12.2□□□□□ -0.46
CHD3-201ENST00000330494 PIBF1Q8WXW3 757 aa12.2□□□□□ -0.46
CHD3-201ENST00000330494 ANKRD20A12PQ8NF67 263 aa12.19□□□□□ -0.46
CHD3-201ENST00000330494 FMNL2Q96PY5 1086 aa12.19□□□□□ -0.46
CHD3-201ENST00000330494 MPHOSPH8Q99549 860 aa12.19□□□□□ -0.46
CHD3-201ENST00000330494 PRPF40AO75400 957 aaKnown RBP12.19□□□□□ -0.46
CHD3-201ENST00000330494 CCT4P50991 539 aaKnown RBP12.19□□□□□ -0.46
CHD3-201ENST00000330494 CWC27Q6UX04 472 aaKnown RBP12.19□□□□□ -0.46
CHD3-201ENST00000330494 SMARCA5O60264 1052 aaPredicted RBP12.19□□□□□ -0.46
CHD3-201ENST00000330494 TMEM57Q8N5G2 664 aa12.19□□□□□ -0.46
CHD3-201ENST00000330494 SDF4Q9BRK5 362 aa12.19□□□□□ -0.46
CHD3-201ENST00000330494 MVPQ14764 893 aaKnown RBP12.19□□□□□ -0.46
CHD3-201ENST00000330494 NUTM1Q86Y26 1132 aa12.19□□□□□ -0.46
CHD3-201ENST00000330494 BRMS1Q9HCU9 246 aa12.19□□□□□ -0.46
CHD3-201ENST00000330494 GNAT3A8MTJ3 354 aa12.19□□□□□ -0.46
CHD3-201ENST00000330494 FIBPO43427 364 aa12.19□□□□□ -0.46
CHD3-201ENST00000330494 ADGRF5Q8IZF2 1346 aa12.18□□□□□ -0.46
CHD3-201ENST00000330494 FBLN1P23142 703 aa12.18□□□□□ -0.46
CHD3-201ENST00000330494 PATL2C9JE40 543 aaKnown RBP12.18□□□□□ -0.46
CHD3-201ENST00000330494 WDR63Q8IWG1 891 aa12.18□□□□□ -0.46
CHD3-201ENST00000330494 GCC1Q96CN9 775 aa12.18□□□□□ -0.46
CHD3-201ENST00000330494 ADGRL1O94910 1474 aa12.18□□□□□ -0.46
CHD3-201ENST00000330494 BICRAQ9NZM4 1560 aa12.18□□□□□ -0.46
CHD3-201ENST00000330494 FOXO3O43524 673 aa12.18□□□□□ -0.46
CHD3-201ENST00000330494 LAMC3Q9Y6N6 1575 aa12.18□□□□□ -0.46
CHD3-201ENST00000330494 SART3Q15020 963 aaKnown RBP12.18□□□□□ -0.46
CHD3-201ENST00000330494 ERC1Q8IUD2 1116 aa12.18□□□□□ -0.46
CHD3-201ENST00000330494 CCDC61Q9Y6R9 512 aa12.18□□□□□ -0.46
CHD3-201ENST00000330494 PDE3AQ14432 1141 aa12.17□□□□□ -0.46
CHD3-201ENST00000330494 CHD1LQ86WJ1 897 aa12.17□□□□□ -0.46
CHD3-201ENST00000330494 MPNDQ8N594 471 aa12.17□□□□□ -0.46
CHD3-201ENST00000330494 NUP133Q8WUM0 1156 aa12.17□□□□□ -0.46
CHD3-201ENST00000330494 IFT57Q9NWB7 429 aa12.17□□□□□ -0.46
CHD3-201ENST00000330494 EXOC6BQ9Y2D4 811 aa12.17□□□□□ -0.46
CHD3-201ENST00000330494 ABCC5O15440 1437 aa12.17□□□□□ -0.46
CHD3-201ENST00000330494 IPO7O95373 1038 aaKnown RBP12.17□□□□□ -0.46
CHD3-201ENST00000330494 CNKSR2Q8WXI2 1034 aa12.17□□□□□ -0.46
CHD3-201ENST00000330494 BRPF1P55201 1214 aaPredicted RBP12.17□□□□□ -0.46
CHD3-201ENST00000330494 NFE2L2Q16236 605 aa12.17□□□□□ -0.46
CHD3-201ENST00000330494 ABCA10Q8WWZ4 1543 aa12.17□□□□□ -0.46
CHD3-201ENST00000330494 EMILIN1Q9Y6C2 1016 aa12.17□□□□□ -0.46
CHD3-201ENST00000330494 XBP1P17861 261 aa12.16□□□□□ -0.46
CHD3-201ENST00000330494 SF3B2Q13435 895 aaKnown RBP12.16□□□□□ -0.46
CHD3-201ENST00000330494 MPRIPQ6WCQ1 1025 aa12.16□□□□□ -0.46
CHD3-201ENST00000330494 FAM135AQ9P2D6 1515 aa12.16□□□□□ -0.46
CHD3-201ENST00000330494 POGZQ7Z3K3 1410 aa12.16□□□□□ -0.46
CHD3-201ENST00000330494 ATAD2Q6PL18 1390 aa12.16□□□□□ -0.46
CHD3-201ENST00000330494 DUSP27Q5VZP5 1158 aa12.16□□□□□ -0.46
CHD3-201ENST00000330494 EPS15P42566 896 aa12.16□□□□□ -0.46
CHD3-201ENST00000330494 ZNF608Q9ULD9 1512 aaPredicted RBP12.16□□□□□ -0.46
CHD3-201ENST00000330494 ANKRD30BQ9BXX2 1392 aa12.16□□□□□ -0.46
CHD3-201ENST00000330494 OLFM4Q6UX06 510 aa12.15□□□□□ -0.46
CHD3-201ENST00000330494 C20orf194Q5TEA3 1177 aa12.15□□□□□ -0.46
CHD3-201ENST00000330494 F6X3S4 739 aa12.15□□□□□ -0.46
CHD3-201ENST00000330494 TRAK2O60296 914 aa12.15□□□□□ -0.46
CHD3-201ENST00000330494 RPGRIP1LQ68CZ1 1315 aa12.15□□□□□ -0.46
CHD3-201ENST00000330494 GRIN2AQ12879 1464 aa12.15□□□□□ -0.46
CHD3-201ENST00000330494 AMOTL2Q9Y2J4 779 aa12.15□□□□□ -0.46
CHD3-201ENST00000330494 FCHSD2O94868 740 aa12.14□□□□□ -0.47
CHD3-201ENST00000330494 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.14□□□□□ -0.471e-6■■■□□ 15.6
CHD3-201ENST00000330494 GNL3LQ9NVN8 582 aaKnown RBP12.14□□□□□ -0.47
CHD3-201ENST00000330494 IDI1Q13907 227 aa12.14□□□□□ -0.47
CHD3-201ENST00000330494 HIP1O00291 1037 aa12.14□□□□□ -0.47
CHD3-201ENST00000330494 MYD88Q99836 296 aa12.14□□□□□ -0.47
CHD3-201ENST00000330494 SLC3A2P08195 630 aaKnown RBP12.14□□□□□ -0.47
CHD3-201ENST00000330494 NASPP49321 788 aaPredicted RBP12.14□□□□□ -0.47
CHD3-201ENST00000330494 AAMPQ13685 434 aa12.14□□□□□ -0.47
CHD3-201ENST00000330494 SPC24Q8NBT2 197 aa12.14□□□□□ -0.47
CHD3-201ENST00000330494 CYP46A1Q9Y6A2 500 aa12.13□□□□□ -0.47
CHD3-201ENST00000330494 SMC2O95347 1197 aa12.13□□□□□ -0.47
CHD3-201ENST00000330494 SLFN5Q08AF3 891 aa12.13□□□□□ -0.47
CHD3-201ENST00000330494 TMEM132AQ24JP5 1023 aa12.13□□□□□ -0.47
CHD3-201ENST00000330494 THOC2Q8NI27 1593 aaKnown RBP12.13□□□□□ -0.47
CHD3-201ENST00000330494 ZSCAN29Q8IWY8 852 aaPredicted RBP12.13□□□□□ -0.47
CHD3-201ENST00000330494 CCDC69A6NI79 296 aa12.12□□□□□ -0.47
CHD3-201ENST00000330494 IDH1O75874 414 aaKnown RBP12.12□□□□□ -0.47
CHD3-201ENST00000330494 CCDC70Q6NSX1 233 aa12.12□□□□□ -0.47
CHD3-201ENST00000330494 ZFYVE27Q5T4F4 411 aa12.12□□□□□ -0.47
CHD3-201ENST00000330494 CDK5RAP3Q96JB5 506 aa12.12□□□□□ -0.47
CHD3-201ENST00000330494 RAI14Q9P0K7 980 aa12.12□□□□□ -0.47
CHD3-201ENST00000330494 ABCF2Q9UG63 623 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms