RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 ABCC3O15438 1527 aa18.08■□□□□ 0.49
SSBP3-201ENST00000326956 ZFYVE9O95405 1425 aa18.08■□□□□ 0.49
SSBP3-201ENST00000326956 CDK19Q9BWU1 502 aa18.08■□□□□ 0.49
SSBP3-201ENST00000326956 CAMSAP1Q5T5Y3 1602 aa18.08■□□□□ 0.48
SSBP3-201ENST00000326956 MED14O60244 1454 aa18.08■□□□□ 0.48
SSBP3-201ENST00000326956 ERBB4Q15303 1308 aa18.08■□□□□ 0.48
SSBP3-201ENST00000326956 TSPYL6Q8N831 410 aa18.08■□□□□ 0.48
SSBP3-201ENST00000326956 RRP9O43818 475 aaKnown RBP18.07■□□□□ 0.48
SSBP3-201ENST00000326956 RABEP1Q15276 862 aa18.07■□□□□ 0.48
SSBP3-201ENST00000326956 TWISTNBQ3B726 338 aaPredicted RBP18.07■□□□□ 0.48
SSBP3-201ENST00000326956 SLC52A1Q9NWF4 448 aa18.07■□□□□ 0.48
SSBP3-201ENST00000326956 PNPLA6Q8IY17 1366 aa18.07■□□□□ 0.48
SSBP3-201ENST00000326956 IFT57Q9NWB7 429 aa18.06■□□□□ 0.48
SSBP3-201ENST00000326956 NEXMIFQ5QGS0 1516 aa18.06■□□□□ 0.48
SSBP3-201ENST00000326956 POGZQ7Z3K3 1410 aa18.06■□□□□ 0.48
SSBP3-201ENST00000326956 HECW2Q9P2P5 1572 aa18.06■□□□□ 0.48
SSBP3-201ENST00000326956 BAG4O95429 457 aaKnown RBP18.06■□□□□ 0.48
SSBP3-201ENST00000326956 KLHL40Q2TBA0 621 aa18.06■□□□□ 0.48
SSBP3-201ENST00000326956 NUCB2P80303 420 aa18.05■□□□□ 0.48
SSBP3-201ENST00000326956 PHACTR3Q96KR7 559 aa18.05■□□□□ 0.48
SSBP3-201ENST00000326956 MLH3Q9UHC1 1453 aa18.05■□□□□ 0.48
SSBP3-201ENST00000326956 FBLN1P23142 703 aa18.05■□□□□ 0.48
SSBP3-201ENST00000326956 LMOD3Q0VAK6 560 aa18.05■□□□□ 0.48
SSBP3-201ENST00000326956 CASC1Q6TDU7 716 aa18.05■□□□□ 0.48
SSBP3-201ENST00000326956 SIRT2Q8IXJ6 389 aa18.05■□□□□ 0.48
SSBP3-201ENST00000326956 POLKQ9UBT6 870 aa18.05■□□□□ 0.48
SSBP3-201ENST00000326956 MSNP26038 577 aaKnown RBP18.04■□□□□ 0.48
SSBP3-201ENST00000326956 MCTP1Q6DN14 999 aa18.04■□□□□ 0.48
SSBP3-201ENST00000326956 MBIPQ9NS73 344 aa18.04■□□□□ 0.48
SSBP3-201ENST00000326956 PTCH1Q13635 1447 aa18.04■□□□□ 0.48
SSBP3-201ENST00000326956 FAM135BQ49AJ0 1406 aa18.03■□□□□ 0.48
SSBP3-201ENST00000326956 STAG3Q9UJ98 1225 aa18.03■□□□□ 0.48
SSBP3-201ENST00000326956 LRRC7Q96NW7 1537 aa18.03■□□□□ 0.48
SSBP3-201ENST00000326956 ABCC4O15439 1325 aa18.03■□□□□ 0.48
SSBP3-201ENST00000326956 PIK3R4Q99570 1358 aa18.03■□□□□ 0.48
SSBP3-201ENST00000326956 FRMPD1Q5SYB0 1578 aa18.02■□□□□ 0.48
SSBP3-201ENST00000326956 INTS3Q68E01 1043 aaKnown RBP18.02■□□□□ 0.48
SSBP3-201ENST00000326956 PLEKHM2Q8IWE5 1019 aa18.02■□□□□ 0.47
SSBP3-201ENST00000326956 TPM2P07951 284 aa18.01■□□□□ 0.47
SSBP3-201ENST00000326956 ZSCAN30Q86W11 494 aa18.01■□□□□ 0.47
SSBP3-201ENST00000326956 YTHDC2Q9H6S0 1430 aaKnown RBP18.01■□□□□ 0.47
SSBP3-201ENST00000326956 ST18O60284 1047 aa18.01■□□□□ 0.47
SSBP3-201ENST00000326956 CLEC17AQ6ZS10 378 aa18.01■□□□□ 0.47
SSBP3-201ENST00000326956 ANKRD26Q9UPS8 1709 aa18■□□□□ 0.47
SSBP3-201ENST00000326956 GSPT1P15170 499 aaKnown RBP18■□□□□ 0.47
SSBP3-201ENST00000326956 CAVIN1Q6NZI2 390 aaKnown RBP18■□□□□ 0.47
SSBP3-201ENST00000326956 CD163L1Q9NR16 1453 aa18■□□□□ 0.47
SSBP3-201ENST00000326956 RAPGEF3O95398 923 aa18■□□□□ 0.47
SSBP3-201ENST00000326956 TTC22Q5TAA0 569 aa18■□□□□ 0.47
SSBP3-201ENST00000326956 PPP1R9BQ96SB3 815 aa18■□□□□ 0.47
SSBP3-201ENST00000326956 C8orf58Q8NAV2 365 aa17.99■□□□□ 0.47
SSBP3-201ENST00000326956 EMILIN1Q9Y6C2 1016 aa17.99■□□□□ 0.47
SSBP3-201ENST00000326956 PTPRMP28827 1452 aa17.99■□□□□ 0.47
SSBP3-201ENST00000326956 IBTKQ9P2D0 1353 aaPredicted RBP17.99■□□□□ 0.47
SSBP3-201ENST00000326956 APBB1O00213 710 aa17.99■□□□□ 0.47
SSBP3-201ENST00000326956 DCTPP1Q9H773 170 aa17.99■□□□□ 0.47
SSBP3-201ENST00000326956 VSIG10Q8N0Z9 540 aa17.98■□□□□ 0.47
SSBP3-201ENST00000326956 CWC22Q9HCG8 908 aaKnown RBP17.98■□□□□ 0.47
SSBP3-201ENST00000326956 HAP1P54257 671 aaPredicted RBP17.97■□□□□ 0.47
SSBP3-201ENST00000326956 USP26Q9BXU7 913 aa17.97■□□□□ 0.47
SSBP3-201ENST00000326956 PIK3C2BO00750 1634 aa17.97■□□□□ 0.47
SSBP3-201ENST00000326956 ZNF853P0CG23 659 aa17.97■□□□□ 0.47
SSBP3-201ENST00000326956 KIAA1211Q6ZU35 1233 aa17.97■□□□□ 0.47
SSBP3-201ENST00000326956 REREQ9P2R6 1566 aa17.96■□□□□ 0.47
SSBP3-201ENST00000326956 SIGLEC1Q9BZZ2 1709 aa17.96■□□□□ 0.47
SSBP3-201ENST00000326956 C16orf71Q8IYS4 520 aaPredicted RBP17.96■□□□□ 0.47
SSBP3-201ENST00000326956 REC8O95072 547 aa17.95■□□□□ 0.46
SSBP3-201ENST00000326956 ZNF445P59923 1031 aa17.95■□□□□ 0.46
SSBP3-201ENST00000326956 IL13P35225 146 aa17.95■□□□□ 0.46
SSBP3-201ENST00000326956 ZSCAN23Q3MJ62 389 aa17.95■□□□□ 0.46
SSBP3-201ENST00000326956 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.95■□□□□ 0.46
SSBP3-201ENST00000326956 RPAP2Q8IXW5 612 aaPredicted RBP17.95■□□□□ 0.46
SSBP3-201ENST00000326956 CDC42BPGQ6DT37 1551 aa17.94■□□□□ 0.46
SSBP3-201ENST00000326956 ARHGAP31Q2M1Z3 1444 aa17.94■□□□□ 0.46
SSBP3-201ENST00000326956 KIF24Q5T7B8 1368 aa17.94■□□□□ 0.46
SSBP3-201ENST00000326956 FAM83GA6ND36 823 aa17.94■□□□□ 0.46
SSBP3-201ENST00000326956 PRPF40AO75400 957 aaKnown RBP17.94■□□□□ 0.46
SSBP3-201ENST00000326956 ANKRD44Q8N8A2 993 aa17.94■□□□□ 0.46
SSBP3-201ENST00000326956 DCTN1Q14203 1278 aa17.93■□□□□ 0.46
SSBP3-201ENST00000326956 LMBRD1Q9NUN5 540 aa17.93■□□□□ 0.46
SSBP3-201ENST00000326956 AK9Q5TCS8 1911 aa17.93■□□□□ 0.46
SSBP3-201ENST00000326956 KIF20BQ96Q89 1820 aa17.93■□□□□ 0.46
SSBP3-201ENST00000326956 SDSP20132 328 aa17.92■□□□□ 0.46
SSBP3-201ENST00000326956 COG3Q96JB2 828 aa17.92■□□□□ 0.46
SSBP3-201ENST00000326956 WAPLQ7Z5K2 1190 aa17.92■□□□□ 0.46
SSBP3-201ENST00000326956 NME9Q86XW9 330 aa17.92■□□□□ 0.46
SSBP3-201ENST00000326956 SMARCA5O60264 1052 aaPredicted RBP17.91■□□□□ 0.46
SSBP3-201ENST00000326956 OTUD7AQ8TE49 926 aaPredicted RBP17.91■□□□□ 0.46
SSBP3-201ENST00000326956 PKP1Q13835 747 aa17.91■□□□□ 0.46
SSBP3-201ENST00000326956 RIMS2Q9UQ26 1411 aa17.91■□□□□ 0.46
SSBP3-201ENST00000326956 ARHGEF40Q8TER5 1519 aa17.9■□□□□ 0.46
SSBP3-201ENST00000326956 OFD1O75665 1012 aa17.9■□□□□ 0.46
SSBP3-201ENST00000326956 CLTCQ00610 1675 aaKnown RBP17.9■□□□□ 0.46
SSBP3-201ENST00000326956 HMMRO75330 724 aa17.9■□□□□ 0.46
SSBP3-201ENST00000326956 ZGPATQ8N5A5 531 aaKnown RBP17.9■□□□□ 0.46
SSBP3-201ENST00000326956 CYP2E1P05181 493 aaPredicted RBP17.89■□□□□ 0.46
SSBP3-201ENST00000326956 RRS1Q15050 365 aaKnown RBP17.89■□□□□ 0.46
SSBP3-201ENST00000326956 ERC2O15083 957 aa17.89■□□□□ 0.45
SSBP3-201ENST00000326956 HS1BP3Q53T59 392 aa17.89■□□□□ 0.45
SSBP3-201ENST00000326956 CEP85Q6P2H3 762 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 148.5 ms