RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 BLMP54132 1417 aaPredicted RBP13.26□□□□□ -0.29
HMGB3-201ENST00000325307 HMOX1P09601 288 aa13.26□□□□□ -0.29
HMGB3-201ENST00000325307 LRRC59Q96AG4 307 aaKnown RBP13.26□□□□□ -0.29
HMGB3-201ENST00000325307 SHPRHQ149N8 1683 aa13.26□□□□□ -0.29
HMGB3-201ENST00000325307 USP54Q70EL1 1684 aa13.25□□□□□ -0.29
HMGB3-201ENST00000325307 ZBED9Q6R2W3 1325 aa13.25□□□□□ -0.29
HMGB3-201ENST00000325307 APAF1O14727 1248 aa13.25□□□□□ -0.29
HMGB3-201ENST00000325307 RUNDC1Q96C34 613 aa13.25□□□□□ -0.29
HMGB3-201ENST00000325307 NEFMP07197 916 aa13.25□□□□□ -0.29
HMGB3-201ENST00000325307 ARHGEF25Q86VW2 580 aa13.25□□□□□ -0.29
HMGB3-201ENST00000325307 NFAT5O94916 1531 aa13.25□□□□□ -0.29
HMGB3-201ENST00000325307 IP6K1Q92551 441 aa13.24□□□□□ -0.29
HMGB3-201ENST00000325307 SLIT3O75094 1523 aa13.24□□□□□ -0.29
HMGB3-201ENST00000325307 MAPK8IP3Q9UPT6 1336 aa13.24□□□□□ -0.29
HMGB3-201ENST00000325307 NHSL1Q5SYE7 1610 aa13.24□□□□□ -0.29
HMGB3-201ENST00000325307 PEAK1Q9H792 1746 aa13.24□□□□□ -0.29
HMGB3-201ENST00000325307 KIF24Q5T7B8 1368 aa13.24□□□□□ -0.29
HMGB3-201ENST00000325307 NEUROD2Q15784 382 aa13.24□□□□□ -0.29
HMGB3-201ENST00000325307 PNNQ9H307 717 aaKnown RBP13.24□□□□□ -0.29
HMGB3-201ENST00000325307 MED1Q15648 1581 aaPredicted RBP13.23□□□□□ -0.29
HMGB3-201ENST00000325307 RTL1A6NKG5 1358 aa13.23□□□□□ -0.29
HMGB3-201ENST00000325307 FCHSD2O94868 740 aa13.22□□□□□ -0.29
HMGB3-201ENST00000325307 PRKAR2BP31323 418 aa13.22□□□□□ -0.29
HMGB3-201ENST00000325307 SULT6B1Q6IMI4 303 aa13.22□□□□□ -0.29
HMGB3-201ENST00000325307 ANP32EQ9BTT0 268 aa13.22□□□□□ -0.29
HMGB3-201ENST00000325307 RRP7AQ9Y3A4 280 aaKnown RBP13.22□□□□□ -0.29
HMGB3-201ENST00000325307 CHRNA2Q15822 529 aa13.22□□□□□ -0.29
HMGB3-201ENST00000325307 TCP11L2Q8N4U5 519 aa13.21□□□□□ -0.29
HMGB3-201ENST00000325307 PRDM11Q9NQV5 511 aa13.21□□□□□ -0.29
HMGB3-201ENST00000325307 LTN1O94822 1766 aa13.21□□□□□ -0.29
HMGB3-201ENST00000325307 IQSEC2Q5JU85 1478 aa13.21□□□□□ -0.3
HMGB3-201ENST00000325307 KIAA0232Q92628 1395 aa13.21□□□□□ -0.3
HMGB3-201ENST00000325307 AEBP1Q8IUX7 1158 aa13.2□□□□□ -0.3
HMGB3-201ENST00000325307 RSPH6AQ9H0K4 717 aa13.2□□□□□ -0.3
HMGB3-201ENST00000325307 AHDC1Q5TGY3 1603 aaPredicted RBP13.2□□□□□ -0.3
HMGB3-201ENST00000325307 EYA1Q99502 592 aa13.2□□□□□ -0.3
HMGB3-201ENST00000325307 ANKRD24Q8TF21 1146 aa13.19□□□□□ -0.3
HMGB3-201ENST00000325307 AXIN2Q9Y2T1 843 aa13.19□□□□□ -0.3
HMGB3-201ENST00000325307 CSB-PGBD3P0DP91 1061 aa13.19□□□□□ -0.3
HMGB3-201ENST00000325307 PLEKHF1Q96S99 279 aa13.19□□□□□ -0.3
HMGB3-201ENST00000325307 PHRF1Q9P1Y6 1649 aaKnown RBP13.18□□□□□ -0.3
HMGB3-201ENST00000325307 PHLPP1O60346 1717 aa13.18□□□□□ -0.3
HMGB3-201ENST00000325307 USHBP1Q8N6Y0 703 aa13.18□□□□□ -0.3
HMGB3-201ENST00000325307 IGSF1Q8N6C5 1336 aa13.16□□□□□ -0.3
HMGB3-201ENST00000325307 PHACTR3Q96KR7 559 aa13.16□□□□□ -0.3
HMGB3-201ENST00000325307 CPDO75976 1380 aa13.16□□□□□ -0.3
HMGB3-201ENST00000325307 NUTM2BA6NNL0 878 aaPredicted RBP13.16□□□□□ -0.3
HMGB3-201ENST00000325307 NUTM2EB1AL46 878 aaPredicted RBP13.16□□□□□ -0.3
HMGB3-201ENST00000325307 NUTM2AQ8IVF1 878 aaPredicted RBP13.16□□□□□ -0.3
HMGB3-201ENST00000325307 NLRP2Q9NX02 1062 aa13.16□□□□□ -0.3
HMGB3-201ENST00000325307 TMPOP42166 694 aaKnown RBP13.16□□□□□ -0.3
HMGB3-201ENST00000325307 NBPF6Q5VWK0 638 aa13.16□□□□□ -0.3
HMGB3-201ENST00000325307 NGEFQ8N5V2 710 aa13.16□□□□□ -0.3
HMGB3-201ENST00000325307 NBPF4Q96M43 638 aa13.16□□□□□ -0.3
HMGB3-201ENST00000325307 RIPK4P57078 832 aa13.15□□□□□ -0.3
HMGB3-201ENST00000325307 UBE2Q2Q8WVN8 375 aa13.15□□□□□ -0.3
HMGB3-201ENST00000325307 ERBB3P21860 1342 aa13.14□□□□□ -0.31
HMGB3-201ENST00000325307 ADAMTS2O95450 1211 aa13.14□□□□□ -0.31
HMGB3-201ENST00000325307 COL16A1Q07092 1604 aaPredicted RBP13.14□□□□□ -0.31
HMGB3-201ENST00000325307 CRYBG1Q9Y4K1 1723 aa13.14□□□□□ -0.31
HMGB3-201ENST00000325307 PDE3BQ13370 1112 aa13.14□□□□□ -0.31
HMGB3-201ENST00000325307 CDCA7LQ96GN5 454 aa13.14□□□□□ -0.31
HMGB3-201ENST00000325307 EVA1CP58658 441 aa13.13□□□□□ -0.31
HMGB3-201ENST00000325307 GOLGA2Q08379 1002 aa13.13□□□□□ -0.31
HMGB3-201ENST00000325307 NFE2L2Q16236 605 aa13.13□□□□□ -0.31
HMGB3-201ENST00000325307 WWC1Q8IX03 1113 aa13.13□□□□□ -0.31
HMGB3-201ENST00000325307 STRN4Q9NRL3 753 aa13.13□□□□□ -0.31
HMGB3-201ENST00000325307 FAM83GA6ND36 823 aa13.13□□□□□ -0.31
HMGB3-201ENST00000325307 FKBP8Q14318 412 aa13.12□□□□□ -0.31
HMGB3-201ENST00000325307 KDRP35968 1356 aa13.12□□□□□ -0.31
HMGB3-201ENST00000325307 RGPD1P0DJD0 1748 aa13.11□□□□□ -0.31
HMGB3-201ENST00000325307 TOM1L2Q6ZVM7 507 aa13.11□□□□□ -0.31
HMGB3-201ENST00000325307 ABCA3Q99758 1704 aa13.11□□□□□ -0.31
HMGB3-201ENST00000325307 BTG4Q9NY30 223 aa13.1□□□□□ -0.31
HMGB3-201ENST00000325307 RGPD5Q99666 1765 aa13.1□□□□□ -0.31
HMGB3-201ENST00000325307 HSPA1LP34931 641 aa13.1□□□□□ -0.31
HMGB3-201ENST00000325307 TSHZ2Q9NRE2 1034 aa13.1□□□□□ -0.31
HMGB3-201ENST00000325307 ZNF521Q96K83 1311 aa13.1□□□□□ -0.31
HMGB3-201ENST00000325307 CCDC27Q2M243 656 aa13.1□□□□□ -0.31
HMGB3-201ENST00000325307 JCADQ9P266 1359 aa13.1□□□□□ -0.31
HMGB3-201ENST00000325307 LMOD3Q0VAK6 560 aa13.09□□□□□ -0.31
HMGB3-201ENST00000325307 RAPGEF4Q8WZA2 1011 aa13.09□□□□□ -0.31
HMGB3-201ENST00000325307 TRIM35Q9UPQ4 493 aa13.09□□□□□ -0.31
HMGB3-201ENST00000325307 MTHFSDQ2M296 383 aaKnown RBP13.09□□□□□ -0.31
HMGB3-201ENST00000325307 GAS2L2Q8NHY3 880 aa13.09□□□□□ -0.31
HMGB3-201ENST00000325307 ABCC6O95255 1503 aa13.09□□□□□ -0.31
HMGB3-201ENST00000325307 CAMTA1Q9Y6Y1 1673 aa13.09□□□□□ -0.31
HMGB3-201ENST00000325307 COL18A1P39060 1754 aa13.08□□□□□ -0.32
HMGB3-201ENST00000325307 COL22A1Q8NFW1 1626 aaPredicted RBP13.08□□□□□ -0.32
HMGB3-201ENST00000325307 WDR17Q8IZU2 1322 aa13.08□□□□□ -0.32
HMGB3-201ENST00000325307 WDR63Q8IWG1 891 aa13.08□□□□□ -0.32
HMGB3-201ENST00000325307 E9PSI1 815 aa13.07□□□□□ -0.32
HMGB3-201ENST00000325307 NCBP3Q53F19 620 aaKnown RBP13.07□□□□□ -0.32
HMGB3-201ENST00000325307 RTF1Q92541 710 aaKnown RBP13.07□□□□□ -0.32
HMGB3-201ENST00000325307 THUMPD2Q9BTF0 503 aaKnown RBP13.07□□□□□ -0.32
HMGB3-201ENST00000325307 USP35Q9P2H5 1018 aa13.07□□□□□ -0.32
HMGB3-201ENST00000325307 PHF23Q9BUL5 403 aaPredicted RBP13.07□□□□□ -0.32
HMGB3-201ENST00000325307 RGPD2P0DJD1 1756 aa13.07□□□□□ -0.32
HMGB3-201ENST00000325307 COL5A2P05997 1499 aaPredicted RBP13.07□□□□□ -0.32
HMGB3-201ENST00000325307 LARP1Q6PKG0 1096 aaKnown RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms