RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 DHX8Q14562 1220 aaKnown RBP13.74□□□□□ -0.21
VPS39-201ENST00000318006 CCDC192P0DO97 292 aa13.74□□□□□ -0.21
VPS39-201ENST00000318006 SLFN5Q08AF3 891 aa13.74□□□□□ -0.21
VPS39-201ENST00000318006 CCDC61Q9Y6R9 512 aa13.74□□□□□ -0.21
VPS39-201ENST00000318006 WWC1Q8IX03 1113 aa13.73□□□□□ -0.21
VPS39-201ENST00000318006 CCDC191Q8NCU4 936 aa13.73□□□□□ -0.21
VPS39-201ENST00000318006 OLFM4Q6UX06 510 aa13.73□□□□□ -0.21
VPS39-201ENST00000318006 SURF6O75683 361 aaKnown RBP13.73□□□□□ -0.21
VPS39-201ENST00000318006 SLC4A2P04920 1241 aa13.73□□□□□ -0.21
VPS39-201ENST00000318006 DCTN1Q14203 1278 aa13.73□□□□□ -0.21
VPS39-201ENST00000318006 CCDC27Q2M243 656 aa13.73□□□□□ -0.21
VPS39-201ENST00000318006 RRP12Q5JTH9 1297 aaKnown RBP13.73□□□□□ -0.21
VPS39-201ENST00000318006 CCDC47Q96A33 483 aaKnown RBP13.73□□□□□ -0.21
VPS39-201ENST00000318006 FIBPO43427 364 aa13.73□□□□□ -0.21
VPS39-201ENST00000318006 C1orf115Q9H7X2 142 aa13.73□□□□□ -0.21
VPS39-201ENST00000318006 RAPGEF6Q8TEU7 1601 aa13.72□□□□□ -0.21
VPS39-201ENST00000318006 PDCP20941 246 aa13.72□□□□□ -0.21
VPS39-201ENST00000318006 MVPQ14764 893 aaKnown RBP13.72□□□□□ -0.21
VPS39-201ENST00000318006 CLASRPQ8N2M8 674 aaKnown RBP13.72□□□□□ -0.21
VPS39-201ENST00000318006 PDILTQ8N807 584 aa13.72□□□□□ -0.21
VPS39-201ENST00000318006 GPATCH8Q9UKJ3 1502 aaKnown RBP13.72□□□□□ -0.21
VPS39-201ENST00000318006 NUP153P49790 1475 aaKnown RBP13.72□□□□□ -0.21
VPS39-201ENST00000318006 KINO60870 393 aaKnown RBP13.72□□□□□ -0.21
VPS39-201ENST00000318006 MPNDQ8N594 471 aa13.71□□□□□ -0.21
VPS39-201ENST00000318006 ADGRF5Q8IZF2 1346 aa13.71□□□□□ -0.21
VPS39-201ENST00000318006 MARCH6O60337 910 aa13.71□□□□□ -0.21
VPS39-201ENST00000318006 SMC2O95347 1197 aa13.71□□□□□ -0.21
VPS39-201ENST00000318006 NUDT16Q96DE0 195 aaKnown RBP13.71□□□□□ -0.21
VPS39-201ENST00000318006 GNAI2P04899 355 aa13.71□□□□□ -0.21
VPS39-201ENST00000318006 RRS1Q15050 365 aaKnown RBP13.71□□□□□ -0.21
VPS39-201ENST00000318006 HDGFL1Q5TGJ6 251 aa13.71□□□□□ -0.21
VPS39-201ENST00000318006 EIF4G3O43432 1585 aaKnown RBP13.71□□□□□ -0.22
VPS39-201ENST00000318006 ZNF428Q96B54 188 aa13.71□□□□□ -0.22
VPS39-201ENST00000318006 PRDM10Q9NQV6 1147 aa13.71□□□□□ -0.22
VPS39-201ENST00000318006 UGGT2Q9NYU1 1516 aa13.7□□□□□ -0.22
VPS39-201ENST00000318006 TMPOP42166 694 aaKnown RBP13.7□□□□□ -0.22
VPS39-201ENST00000318006 WDR33Q9C0J8 1336 aaKnown RBP13.7□□□□□ -0.22
VPS39-201ENST00000318006 POGZQ7Z3K3 1410 aa13.7□□□□□ -0.22
VPS39-201ENST00000318006 TSPYL1Q9H0U9 437 aa13.7□□□□□ -0.22
VPS39-201ENST00000318006 PSMA5P28066 241 aa13.7□□□□□ -0.22
VPS39-201ENST00000318006 TRDNQ13061 729 aa13.7□□□□□ -0.22
VPS39-201ENST00000318006 NEUROD6Q96NK8 337 aa13.7□□□□□ -0.22
VPS39-201ENST00000318006 ABCA5Q8WWZ7 1642 aa13.7□□□□□ -0.22
VPS39-201ENST00000318006 ANKLE2Q86XL3 938 aa13.7□□□□□ -0.22
VPS39-201ENST00000318006 CCT4P50991 539 aaKnown RBP13.69□□□□□ -0.22
VPS39-201ENST00000318006 USP8P40818 1118 aa13.69□□□□□ -0.22
VPS39-201ENST00000318006 CBX1P83916 185 aa13.69□□□□□ -0.22
VPS39-201ENST00000318006 NFE2L2Q16236 605 aa13.69□□□□□ -0.22
VPS39-201ENST00000318006 CNTROBQ8N137 903 aa13.69□□□□□ -0.22
VPS39-201ENST00000318006 CAGE1Q8TC20 777 aa13.69□□□□□ -0.22
VPS39-201ENST00000318006 WDR62O43379 1518 aa13.68□□□□□ -0.22
VPS39-201ENST00000318006 ERICH4A6NGS2 130 aa13.68□□□□□ -0.22
VPS39-201ENST00000318006 NCBP3Q53F19 620 aaKnown RBP13.68□□□□□ -0.22
VPS39-201ENST00000318006 DEF6Q9H4E7 631 aa13.68□□□□□ -0.22
VPS39-201ENST00000318006 AXDND1Q5T1B0 1012 aaPredicted RBP13.68□□□□□ -0.22
VPS39-201ENST00000318006 WAPLQ7Z5K2 1190 aa13.68□□□□□ -0.22
VPS39-201ENST00000318006 KIAA0556O60303 1618 aa13.68□□□□□ -0.22
VPS39-201ENST00000318006 ATP10BO94823 1461 aa13.68□□□□□ -0.22
VPS39-201ENST00000318006 EIF3JO75822 258 aaKnown RBP13.68□□□□□ -0.22
VPS39-201ENST00000318006 ZNF530Q6P9A1 599 aaPredicted RBP13.68□□□□□ -0.22
VPS39-201ENST00000318006 TATP17735 454 aaPredicted RBP13.67□□□□□ -0.22
VPS39-201ENST00000318006 IDI1Q13907 227 aa13.67□□□□□ -0.22
VPS39-201ENST00000318006 PBRM1Q86U86 1689 aa13.67□□□□□ -0.22
VPS39-201ENST00000318006 FOSBP53539 338 aa13.67□□□□□ -0.22
VPS39-201ENST00000318006 CFAP43Q8NDM7 1665 aa13.67□□□□□ -0.22
VPS39-201ENST00000318006 ERLIN1O75477 346 aa13.67□□□□□ -0.22
VPS39-201ENST00000318006 VPS37DQ86XT2 251 aa13.67□□□□□ -0.22
VPS39-201ENST00000318006 FANCAO15360 1455 aa13.67□□□□□ -0.22
VPS39-201ENST00000318006 SCAF11Q99590 1463 aaKnown RBP13.67□□□□□ -0.22
VPS39-201ENST00000318006 FAM135AQ9P2D6 1515 aa13.66□□□□□ -0.22
VPS39-201ENST00000318006 NAP1L1P55209 391 aaKnown RBP13.66□□□□□ -0.22
VPS39-201ENST00000318006 SAFBQ15424 915 aaKnown RBP eCLIP13.66□□□□□ -0.22
VPS39-201ENST00000318006 TNMDQ9H2S6 317 aa13.66□□□□□ -0.22
VPS39-201ENST00000318006 KIAA0754O94854 1291 aa13.66□□□□□ -0.22
VPS39-201ENST00000318006 NOL10Q9BSC4 688 aaKnown RBP13.66□□□□□ -0.22
VPS39-201ENST00000318006 FSD1Q9BTV5 496 aa13.66□□□□□ -0.22
VPS39-201ENST00000318006 DHX29Q7Z478 1369 aaKnown RBP13.66□□□□□ -0.22
VPS39-201ENST00000318006 FMNL2Q96PY5 1086 aa13.65□□□□□ -0.22
VPS39-201ENST00000318006 AEBP1Q8IUX7 1158 aa13.65□□□□□ -0.22
VPS39-201ENST00000318006 SRCIN1Q9C0H9 1055 aa13.65□□□□□ -0.22
VPS39-201ENST00000318006 CALCOCO1Q9P1Z2 691 aa13.65□□□□□ -0.22
VPS39-201ENST00000318006 CLCN1P35523 988 aa13.65□□□□□ -0.22
VPS39-201ENST00000318006 XPCQ01831 940 aaPredicted RBP13.65□□□□□ -0.22
VPS39-201ENST00000318006 HSP90AB3PQ58FF7 597 aa13.65□□□□□ -0.22
VPS39-201ENST00000318006 AMOTL1Q8IY63 956 aa13.65□□□□□ -0.22
VPS39-201ENST00000318006 ERC1Q8IUD2 1116 aa13.65□□□□□ -0.22
VPS39-201ENST00000318006 MAPKBP1O60336 1514 aa13.64□□□□□ -0.23
VPS39-201ENST00000318006 SYCE3A1L190 88 aa13.64□□□□□ -0.23
VPS39-201ENST00000318006 MAPK8IP2Q13387 824 aaPredicted RBP13.64□□□□□ -0.23
VPS39-201ENST00000318006 WASHC4Q2M389 1173 aa13.64□□□□□ -0.23
VPS39-201ENST00000318006 TTLL5Q6EMB2 1281 aa13.64□□□□□ -0.23
VPS39-201ENST00000318006 SMARCE1Q969G3 411 aa13.64□□□□□ -0.23
VPS39-201ENST00000318006 MCM5P33992 734 aa13.64□□□□□ -0.23
VPS39-201ENST00000318006 KRT85P78386 507 aa13.64□□□□□ -0.23
VPS39-201ENST00000318006 NOS1P29475 1434 aa13.63□□□□□ -0.23
VPS39-201ENST00000318006 FBXO31Q5XUX0 539 aaPredicted RBP13.63□□□□□ -0.23
VPS39-201ENST00000318006 RALYLQ86SE5 291 aaKnown RBP13.63□□□□□ -0.23
VPS39-201ENST00000318006 CHD1LQ86WJ1 897 aa13.63□□□□□ -0.23
VPS39-201ENST00000318006 ZNF396Q96N95 335 aaPredicted RBP13.63□□□□□ -0.23
VPS39-201ENST00000318006 C14orf93Q9H972 538 aaKnown RBP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms