RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 BTG4Q9NY30 223 aa24.51■■□□□ 1.51
HMGA1-201ENST00000311487 PEAK1Q9H792 1746 aa24.51■■□□□ 1.51
HMGA1-201ENST00000311487 AATKQ6ZMQ8 1374 aa24.51■■□□□ 1.51
HMGA1-201ENST00000311487 STRN4Q9NRL3 753 aa24.51■■□□□ 1.51
HMGA1-201ENST00000311487 CPDO75976 1380 aa24.48■■□□□ 1.51
HMGA1-201ENST00000311487 IP6K1Q92551 441 aa24.48■■□□□ 1.51
HMGA1-201ENST00000311487 RGPD5Q99666 1765 aa24.47■■□□□ 1.51
HMGA1-201ENST00000311487 CAMTA1Q9Y6Y1 1673 aa24.45■■□□□ 1.5
HMGA1-201ENST00000311487 FLT4P35916 1363 aa24.44■■□□□ 1.5
HMGA1-201ENST00000311487 EVA1CP58658 441 aa24.44■■□□□ 1.5
HMGA1-201ENST00000311487 ANKRD24Q8TF21 1146 aa24.44■■□□□ 1.5
HMGA1-201ENST00000311487 CSB-PGBD3P0DP91 1061 aa24.43■■□□□ 1.5
HMGA1-201ENST00000311487 USP35Q9P2H5 1018 aa24.43■■□□□ 1.5
HMGA1-201ENST00000311487 EIF4A2Q14240 407 aaKnown RBP24.42■■□□□ 1.5
HMGA1-201ENST00000311487 COL18A1P39060 1754 aa24.42■■□□□ 1.5
HMGA1-201ENST00000311487 LARP1Q6PKG0 1096 aaKnown RBP24.41■■□□□ 1.5
HMGA1-201ENST00000311487 PELP1Q8IZL8 1130 aaKnown RBP24.41■■□□□ 1.5
HMGA1-201ENST00000311487 USHBP1Q8N6Y0 703 aa24.41■■□□□ 1.5
HMGA1-201ENST00000311487 MRS2Q9HD23 443 aa24.41■■□□□ 1.5
HMGA1-201ENST00000311487 AFF2P51816 1311 aa24.41■■□□□ 1.5
HMGA1-201ENST00000311487 USP21Q9UK80 565 aa24.4■■□□□ 1.5
HMGA1-201ENST00000311487 U2SURPO15042 1029 aaKnown RBP24.39■■□□□ 1.5
HMGA1-201ENST00000311487 CFAP53Q96M91 514 aa24.39■■□□□ 1.5
HMGA1-201ENST00000311487 SMG6Q86US8 1419 aaKnown RBP24.39■■□□□ 1.5
HMGA1-201ENST00000311487 INSRP06213 1382 aa24.38■■□□□ 1.49
HMGA1-201ENST00000311487 DIAPH1O60610 1272 aaKnown RBP24.38■■□□□ 1.49
HMGA1-201ENST00000311487 NLRP2Q9NX02 1062 aa24.38■■□□□ 1.49
HMGA1-201ENST00000311487 CCDC9Q9Y3X0 531 aaKnown RBP24.38■■□□□ 1.49
HMGA1-201ENST00000311487 CDK12Q9NYV4 1490 aaPredicted RBP24.38■■□□□ 1.49
HMGA1-201ENST00000311487 COL14A1Q05707 1796 aaKnown RBP24.38■■□□□ 1.49
HMGA1-201ENST00000311487 PLCH1Q4KWH8 1693 aa24.38■■□□□ 1.49
HMGA1-201ENST00000311487 LMO7Q8WWI1 1683 aa24.38■■□□□ 1.49
HMGA1-201ENST00000311487 ERBB3P21860 1342 aa24.37■■□□□ 1.49
HMGA1-201ENST00000311487 RTL1A6NKG5 1358 aa24.37■■□□□ 1.49
HMGA1-201ENST00000311487 IL13P35225 146 aa24.37■■□□□ 1.49
HMGA1-201ENST00000311487 TOM1L2Q6ZVM7 507 aa24.37■■□□□ 1.49
HMGA1-201ENST00000311487 COL5A2P05997 1499 aaPredicted RBP24.37■■□□□ 1.49
HMGA1-201ENST00000311487 NBPF6Q5VWK0 638 aa24.36■■□□□ 1.49
HMGA1-201ENST00000311487 FNBP4Q8N3X1 1017 aaPredicted RBP24.36■■□□□ 1.49
HMGA1-201ENST00000311487 NBPF4Q96M43 638 aa24.36■■□□□ 1.49
HMGA1-201ENST00000311487 BCL9LQ86UU0 1499 aa24.35■■□□□ 1.49
HMGA1-201ENST00000311487 SENP3-EIF4A1A0A087X0R7 540 aa24.35■■□□□ 1.49
HMGA1-201ENST00000311487 HMOX1P09601 288 aa24.35■■□□□ 1.49
HMGA1-201ENST00000311487 UNC5CLQ8IV45 518 aa24.35■■□□□ 1.49
HMGA1-201ENST00000311487 SLIT2O94813 1529 aa24.34■■□□□ 1.49
HMGA1-201ENST00000311487 EYA1Q99502 592 aa24.34■■□□□ 1.49
HMGA1-201ENST00000311487 BLMP54132 1417 aaPredicted RBP24.34■■□□□ 1.49
HMGA1-201ENST00000311487 COL3A1P02461 1466 aaPredicted RBP24.34■■□□□ 1.49
HMGA1-201ENST00000311487 RGPD2P0DJD1 1756 aa24.34■■□□□ 1.49
HMGA1-201ENST00000311487 AEBP1Q8IUX7 1158 aa24.33■■□□□ 1.49
HMGA1-201ENST00000311487 KIF24Q5T7B8 1368 aa24.33■■□□□ 1.48
HMGA1-201ENST00000311487 WDR17Q8IZU2 1322 aa24.31■■□□□ 1.48
HMGA1-201ENST00000311487 U2AF1L5P0DN76 240 aaPredicted RBP24.31■■□□□ 1.48
HMGA1-201ENST00000311487 U2AF1Q01081 240 aaKnown RBP eCLIP24.31■■□□□ 1.48
HMGA1-201ENST00000311487 FAM9BQ8IZU0 186 aa24.31■■□□□ 1.48
HMGA1-201ENST00000311487 PHF23Q9BUL5 403 aaPredicted RBP24.3■■□□□ 1.48
HMGA1-201ENST00000311487 SULT6B1Q6IMI4 303 aa24.29■■□□□ 1.48
HMGA1-201ENST00000311487 QTRT2Q9H974 415 aaKnown RBP24.29■■□□□ 1.48
HMGA1-201ENST00000311487 RGS17Q9UGC6 210 aaPredicted RBP24.29■■□□□ 1.48
HMGA1-201ENST00000311487 ADAMTS8Q9UP79 889 aa24.27■■□□□ 1.48
HMGA1-201ENST00000311487 NUDCQ9Y266 331 aa24.27■■□□□ 1.48
HMGA1-201ENST00000311487 NRAPQ86VF7 1730 aa24.27■■□□□ 1.48
HMGA1-201ENST00000311487 WDR43Q15061 677 aaKnown RBP eCLIP24.26■■□□□ 1.47
HMGA1-201ENST00000311487 PNISRQ8TF01 805 aaKnown RBP24.26■■□□□ 1.47
HMGA1-201ENST00000311487 CCER2I3L3R5 266 aa24.25■■□□□ 1.47
HMGA1-201ENST00000311487 CCDC146Q8IYE0 955 aa24.25■■□□□ 1.47
HMGA1-201ENST00000311487 CRB1P82279 1406 aa24.24■■□□□ 1.47
HMGA1-201ENST00000311487 NWD2Q9ULI1 1742 aa24.24■■□□□ 1.47
HMGA1-201ENST00000311487 ABCC6O95255 1503 aa24.24■■□□□ 1.47
HMGA1-201ENST00000311487 VPS72Q15906 364 aa24.23■■□□□ 1.47
HMGA1-201ENST00000311487 SPATA31A1Q5TZJ5 1347 aa24.23■■□□□ 1.47
HMGA1-201ENST00000311487 SPATA31A5Q5VU36 1347 aa24.23■■□□□ 1.47
HMGA1-201ENST00000311487 SPATA31A7Q8IWB4 1347 aa24.23■■□□□ 1.47
HMGA1-201ENST00000311487 CENPBP07199 599 aaPredicted RBP24.23■■□□□ 1.47
HMGA1-201ENST00000311487 FAM98CQ17RN3 349 aaKnown RBP24.23■■□□□ 1.47
HMGA1-201ENST00000311487 CARD10Q9BWT7 1032 aa24.23■■□□□ 1.47
HMGA1-201ENST00000311487 IGSF1Q8N6C5 1336 aa24.23■■□□□ 1.47
HMGA1-201ENST00000311487 TRPC5Q9UL62 973 aaPredicted RBP24.22■■□□□ 1.47
HMGA1-201ENST00000311487 A0A0G2JS52 829 aa24.21■■□□□ 1.47
HMGA1-201ENST00000311487 MYT1Q01538 1121 aa24.21■■□□□ 1.47
HMGA1-201ENST00000311487 ZNF772Q68DY9 489 aaPredicted RBP24.21■■□□□ 1.47
HMGA1-201ENST00000311487 POTEAQ6S8J7 498 aa24.21■■□□□ 1.47
HMGA1-201ENST00000311487 GJD4Q96KN9 370 aaPredicted RBP24.21■■□□□ 1.47
HMGA1-201ENST00000311487 TCP11L2Q8N4U5 519 aa24.2■■□□□ 1.46
HMGA1-201ENST00000311487 PRKAR2BP31323 418 aa24.2■■□□□ 1.46
HMGA1-201ENST00000311487 YTHDC1Q96MU7 727 aaKnown RBP24.19■■□□□ 1.46
HMGA1-201ENST00000311487 PHACTR3Q96KR7 559 aa24.18■■□□□ 1.46
HMGA1-201ENST00000311487 RSPH6AQ9H0K4 717 aa24.18■■□□□ 1.46
HMGA1-201ENST00000311487 RGPD1P0DJD0 1748 aa24.17■■□□□ 1.46
HMGA1-201ENST00000311487 ATRNO75882 1429 aa24.17■■□□□ 1.46
HMGA1-201ENST00000311487 RAPGEF4Q8WZA2 1011 aa24.16■■□□□ 1.46
HMGA1-201ENST00000311487 MEGF6O75095 1541 aa24.15■■□□□ 1.46
HMGA1-201ENST00000311487 FAM208AQ9UK61 1670 aaKnown RBP24.14■■□□□ 1.46
HMGA1-201ENST00000311487 IL2RBP14784 551 aa24.14■■□□□ 1.46
HMGA1-201ENST00000311487 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.14■■□□□ 1.45
HMGA1-201ENST00000311487 GLI3P10071 1580 aa24.13■■□□□ 1.45
HMGA1-201ENST00000311487 FCHSD2O94868 740 aa24.13■■□□□ 1.45
HMGA1-201ENST00000311487 TATP17735 454 aaPredicted RBP24.12■■□□□ 1.45
HMGA1-201ENST00000311487 RRP7AQ9Y3A4 280 aaKnown RBP24.12■■□□□ 1.45
HMGA1-201ENST00000311487 SALL2Q9Y467 1007 aaPredicted RBP24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms