RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.33□□□□□ -0.44
CLDN1-201ENST00000295522 KDM5DQ9BY66 1539 aa12.33□□□□□ -0.44
CLDN1-201ENST00000295522 GCC1Q96CN9 775 aa12.32□□□□□ -0.44
CLDN1-201ENST00000295522 PYCARDQ9ULZ3 195 aa12.32□□□□□ -0.44
CLDN1-201ENST00000295522 RAPGEF6Q8TEU7 1601 aa12.32□□□□□ -0.44
CLDN1-201ENST00000295522 CCDC66A2RUB6 948 aa12.32□□□□□ -0.44
CLDN1-201ENST00000295522 ERCC6L2Q5T890 1561 aa12.32□□□□□ -0.44
CLDN1-201ENST00000295522 OTUD7AQ8TE49 926 aaPredicted RBP12.32□□□□□ -0.44
CLDN1-201ENST00000295522 ZBTB9Q96C00 473 aa12.32□□□□□ -0.44
CLDN1-201ENST00000295522 UPF3BQ9BZI7 483 aaKnown RBP12.32□□□□□ -0.44
CLDN1-201ENST00000295522 PTPRGP23470 1445 aa12.31□□□□□ -0.44
CLDN1-201ENST00000295522 GSPT1P15170 499 aaKnown RBP12.31□□□□□ -0.44
CLDN1-201ENST00000295522 ABCC2Q92887 1545 aa12.31□□□□□ -0.44
CLDN1-201ENST00000295522 GIMAP6Q6P9H5 292 aa12.31□□□□□ -0.44
CLDN1-201ENST00000295522 AFAP1Q8N556 730 aa12.31□□□□□ -0.44
CLDN1-201ENST00000295522 LARP6Q9BRS8 491 aaKnown RBP12.31□□□□□ -0.44
CLDN1-201ENST00000295522 FKBP5Q13451 457 aaPredicted RBP12.31□□□□□ -0.44
CLDN1-201ENST00000295522 CLEC17AQ6ZS10 378 aa12.31□□□□□ -0.44
CLDN1-201ENST00000295522 THUMPD2Q9BTF0 503 aaKnown RBP12.31□□□□□ -0.44
CLDN1-201ENST00000295522 ATAD2Q6PL18 1390 aa12.3□□□□□ -0.44
CLDN1-201ENST00000295522 TRIM6-TRIM34B2RNG4 842 aa12.3□□□□□ -0.44
CLDN1-201ENST00000295522 IRX5P78411 483 aaPredicted RBP12.3□□□□□ -0.44
CLDN1-201ENST00000295522 USP48Q86UV5 1035 aa12.3□□□□□ -0.44
CLDN1-201ENST00000295522 TMX3Q96JJ7 454 aa12.3□□□□□ -0.44
CLDN1-201ENST00000295522 USP26Q9BXU7 913 aa12.3□□□□□ -0.44
CLDN1-201ENST00000295522 TRIM34Q9BYJ4 488 aa12.3□□□□□ -0.44
CLDN1-201ENST00000295522 KIAA0556O60303 1618 aa12.3□□□□□ -0.44
CLDN1-201ENST00000295522 NSD3Q9BZ95 1437 aa12.3□□□□□ -0.44
CLDN1-201ENST00000295522 GOLGA6L6A8MZA4 724 aa12.3□□□□□ -0.44
CLDN1-201ENST00000295522 RTF1Q92541 710 aaKnown RBP12.3□□□□□ -0.44
CLDN1-201ENST00000295522 OGFRQ9NZT2 677 aa12.3□□□□□ -0.44
CLDN1-201ENST00000295522 TRPM1Q7Z4N2 1603 aa12.3□□□□□ -0.44
CLDN1-201ENST00000295522 REC8O95072 547 aa12.3□□□□□ -0.44
CLDN1-201ENST00000295522 ZFP91Q96JP5 570 aaPredicted RBP12.3□□□□□ -0.44
CLDN1-201ENST00000295522 KIF3BO15066 747 aa12.29□□□□□ -0.44
CLDN1-201ENST00000295522 TMPOP42166 694 aaKnown RBP12.29□□□□□ -0.44
CLDN1-201ENST00000295522 TIGD1Q96MW7 591 aa12.29□□□□□ -0.44
CLDN1-201ENST00000295522 ANO2Q9NQ90 1003 aa12.29□□□□□ -0.44
CLDN1-201ENST00000295522 TSHZ3Q63HK5 1081 aa12.29□□□□□ -0.44
CLDN1-201ENST00000295522 CCDC112Q8NEF3 446 aa12.29□□□□□ -0.44
CLDN1-201ENST00000295522 CYP2E1P05181 493 aaPredicted RBP12.28□□□□□ -0.44
CLDN1-201ENST00000295522 PTGS1P23219 599 aa12.28□□□□□ -0.44
CLDN1-201ENST00000295522 TPD52L1Q16890 204 aaPredicted RBP12.28□□□□□ -0.44
CLDN1-201ENST00000295522 FAM184AQ8NB25 1140 aa12.28□□□□□ -0.44
CLDN1-201ENST00000295522 RILPL2Q969X0 211 aa12.28□□□□□ -0.44
CLDN1-201ENST00000295522 CLASP1Q7Z460 1538 aa12.28□□□□□ -0.44
CLDN1-201ENST00000295522 TNNT1P13805 278 aa12.27□□□□□ -0.44
CLDN1-201ENST00000295522 SDSP20132 328 aa12.27□□□□□ -0.44
CLDN1-201ENST00000295522 CNPY2Q9Y2B0 182 aa12.27□□□□□ -0.44
CLDN1-201ENST00000295522 SRPK2P78362 688 aaKnown RBP12.27□□□□□ -0.45
CLDN1-201ENST00000295522 TAF7LQ5H9L4 462 aa12.27□□□□□ -0.45
CLDN1-201ENST00000295522 PLEKHM2Q8IWE5 1019 aa12.27□□□□□ -0.45
CLDN1-201ENST00000295522 FEZ1Q99689 392 aa12.27□□□□□ -0.45
CLDN1-201ENST00000295522 GGNBP2Q9H3C7 697 aa12.27□□□□□ -0.45
CLDN1-201ENST00000295522 POLR3AO14802 1390 aaPredicted RBP12.27□□□□□ -0.45
CLDN1-201ENST00000295522 SCAPERQ9BY12 1400 aa12.26□□□□□ -0.45
CLDN1-201ENST00000295522 ATP10BO94823 1461 aa12.26□□□□□ -0.45
CLDN1-201ENST00000295522 ADGRL2O95490 1459 aa12.26□□□□□ -0.45
CLDN1-201ENST00000295522 PRDM15P57071 1507 aaPredicted RBP12.26□□□□□ -0.45
CLDN1-201ENST00000295522 TTC22Q5TAA0 569 aa12.26□□□□□ -0.45
CLDN1-201ENST00000295522 GTF2F1P35269 517 aaKnown RBP eCLIP12.26□□□□□ -0.45
CLDN1-201ENST00000295522 NCBP1Q09161 790 aaKnown RBP12.26□□□□□ -0.45
CLDN1-201ENST00000295522 RSPH4AQ5TD94 716 aa12.26□□□□□ -0.45
CLDN1-201ENST00000295522 KDM4AO75164 1064 aa12.25□□□□□ -0.45
CLDN1-201ENST00000295522 LRMPQ12912 555 aa12.25□□□□□ -0.45
CLDN1-201ENST00000295522 CAMK4Q16566 473 aa12.25□□□□□ -0.45
CLDN1-201ENST00000295522 CCDC183Q5T5S1 534 aa12.25□□□□□ -0.45
CLDN1-201ENST00000295522 MCCP23508 829 aa12.25□□□□□ -0.45
CLDN1-201ENST00000295522 TMEM132EQ6IEE7 984 aa12.25□□□□□ -0.45
CLDN1-201ENST00000295522 CCDC186Q7Z3E2 898 aa12.25□□□□□ -0.45
CLDN1-201ENST00000295522 TRIM5Q9C035 493 aa12.25□□□□□ -0.45
CLDN1-201ENST00000295522 ERC2O15083 957 aa12.24□□□□□ -0.45
CLDN1-201ENST00000295522 ZBTB7BO15156 539 aaPredicted RBP12.24□□□□□ -0.45
CLDN1-201ENST00000295522 EFCAB2Q5VUJ9 269 aa12.24□□□□□ -0.45
CLDN1-201ENST00000295522 ST7Q9NRC1 585 aa12.24□□□□□ -0.45
CLDN1-201ENST00000295522 CT47B1P0C2W7 299 aaPredicted RBP12.24□□□□□ -0.45
CLDN1-201ENST00000295522 CYB5RLQ6IPT4 315 aa12.24□□□□□ -0.45
CLDN1-201ENST00000295522 KIAA1524Q8TCG1 905 aa12.24□□□□□ -0.45
CLDN1-201ENST00000295522 PPIP5K1Q6PFW1 1433 aa12.24□□□□□ -0.45
CLDN1-201ENST00000295522 SPAG9O60271 1321 aaKnown RBP12.24□□□□□ -0.45
CLDN1-201ENST00000295522 SIRT2Q8IXJ6 389 aa12.24□□□□□ -0.45
CLDN1-201ENST00000295522 KRT222Q8N1A0 295 aa12.24□□□□□ -0.45
CLDN1-201ENST00000295522 TMX1Q9H3N1 280 aa12.24□□□□□ -0.45
CLDN1-201ENST00000295522 ARHGAP5Q13017 1502 aa12.23□□□□□ -0.45
CLDN1-201ENST00000295522 DNAJC2Q99543 621 aaKnown RBP12.23□□□□□ -0.45
CLDN1-201ENST00000295522 ADGBQ8N7X0 1667 aa12.23□□□□□ -0.45
CLDN1-201ENST00000295522 PLA2R1Q13018 1463 aa12.23□□□□□ -0.45
CLDN1-201ENST00000295522 SCAF11Q99590 1463 aaKnown RBP12.23□□□□□ -0.45
CLDN1-201ENST00000295522 HMOX1P09601 288 aa12.23□□□□□ -0.45
CLDN1-201ENST00000295522 CFAP44Q96MT7 982 aa12.23□□□□□ -0.45
CLDN1-201ENST00000295522 GABPB1Q06547 395 aaPredicted RBP12.23□□□□□ -0.45
CLDN1-201ENST00000295522 UVSSAQ2YD98 709 aa12.23□□□□□ -0.45
CLDN1-201ENST00000295522 KCNF1Q9H3M0 494 aa12.23□□□□□ -0.45
CLDN1-201ENST00000295522 VPS37CA5D8V6 355 aaPredicted RBP12.22□□□□□ -0.45
CLDN1-201ENST00000295522 BRD1O95696 1058 aa12.22□□□□□ -0.45
CLDN1-201ENST00000295522 TSPYL6Q8N831 410 aa12.22□□□□□ -0.45
CLDN1-201ENST00000295522 STK26Q9P289 416 aa12.22□□□□□ -0.45
CLDN1-201ENST00000295522 TRIM35Q9UPQ4 493 aa12.22□□□□□ -0.45
CLDN1-201ENST00000295522 CCDC141Q6ZP82 1450 aa12.22□□□□□ -0.45
CLDN1-201ENST00000295522 GGT6Q6P531 493 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms