RNA–Protein interactions for RNA: ENST00000288398.10

TPM1-202, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-202ENST00000288398 CAMKK2Q96RR4 588 aa19.88■□□□□ 0.77
TPM1-202ENST00000288398 CDCA7Q9BWT1 371 aaPredicted RBP19.88■□□□□ 0.77
TPM1-202ENST00000288398 OVOS2A0A0G2JMS6 1433 aa19.87■□□□□ 0.77
TPM1-202ENST00000288398 OVOS2A0A0J9YW53 1432 aa19.87■□□□□ 0.77
TPM1-202ENST00000288398 OVOS2Q6IE36 1432 aa19.87■□□□□ 0.77
TPM1-202ENST00000288398 PARP4Q9UKK3 1724 aaKnown RBP19.87■□□□□ 0.77
TPM1-202ENST00000288398 AKAP12Q02952 1782 aa19.86■□□□□ 0.77
TPM1-202ENST00000288398 ARHGEF25Q86VW2 580 aa19.86■□□□□ 0.77
TPM1-202ENST00000288398 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.86■□□□□ 0.77
TPM1-202ENST00000288398 TERF2IPQ9NYB0 399 aa19.83■□□□□ 0.77
TPM1-202ENST00000288398 AXIN2Q9Y2T1 843 aa19.83■□□□□ 0.77
TPM1-202ENST00000288398 CARD10Q9BWT7 1032 aa19.82■□□□□ 0.76
TPM1-202ENST00000288398 SLC24A1O60721 1099 aa19.8■□□□□ 0.76
TPM1-202ENST00000288398 LRRC37A3O60309 1634 aa19.8■□□□□ 0.76
TPM1-202ENST00000288398 MON2Q7Z3U7 1717 aa19.79■□□□□ 0.76
TPM1-202ENST00000288398 EXOC5O00471 708 aa19.79■□□□□ 0.76
TPM1-202ENST00000288398 NME9Q86XW9 330 aa19.79■□□□□ 0.76
TPM1-202ENST00000288398 COL18A1P39060 1754 aa19.79■□□□□ 0.76
TPM1-202ENST00000288398 CCDC7Q96M83 1385 aa19.79■□□□□ 0.76
TPM1-202ENST00000288398 NFAT5O94916 1531 aa19.78■□□□□ 0.76
TPM1-202ENST00000288398 ABCC6O95255 1503 aa19.78■□□□□ 0.76
TPM1-202ENST00000288398 SLC12A5Q9H2X9 1139 aa19.78■□□□□ 0.76
TPM1-202ENST00000288398 EDC4Q6P2E9 1401 aaKnown RBP19.77■□□□□ 0.76
TPM1-202ENST00000288398 BCL11BQ9C0K0 894 aaPredicted RBP19.77■□□□□ 0.76
TPM1-202ENST00000288398 USP31Q70CQ4 1352 aa19.77■□□□□ 0.76
TPM1-202ENST00000288398 RREB1Q92766 1687 aa19.77■□□□□ 0.76
TPM1-202ENST00000288398 PUS7Q96PZ0 661 aaKnown RBP19.76■□□□□ 0.75
TPM1-202ENST00000288398 NLRP2Q9NX02 1062 aa19.76■□□□□ 0.75
TPM1-202ENST00000288398 TRIM26Q12899 539 aaPredicted RBP19.75■□□□□ 0.75
TPM1-202ENST00000288398 WNK3Q9BYP7 1800 aa19.74■□□□□ 0.75
TPM1-202ENST00000288398 NUP188Q5SRE5 1749 aa19.74■□□□□ 0.75
TPM1-202ENST00000288398 NINLQ9Y2I6 1382 aa19.74■□□□□ 0.75
TPM1-202ENST00000288398 PLSCR1O15162 318 aa19.74■□□□□ 0.75
TPM1-202ENST00000288398 MARCH10Q8NA82 808 aaPredicted RBP19.74■□□□□ 0.75
TPM1-202ENST00000288398 PPP1R1BQ9UD71 204 aaPredicted RBP19.74■□□□□ 0.75
TPM1-202ENST00000288398 A0A1W2PP64 1363 aa19.73■□□□□ 0.75
TPM1-202ENST00000288398 RGPD5Q99666 1765 aa19.73■□□□□ 0.75
TPM1-202ENST00000288398 PEAK1Q9H792 1746 aa19.73■□□□□ 0.75
TPM1-202ENST00000288398 CD163L1Q9NR16 1453 aa19.73■□□□□ 0.75
TPM1-202ENST00000288398 ST20-MTHFSA0A0A6YYL1 179 aa19.72■□□□□ 0.75
TPM1-202ENST00000288398 ERBB3P21860 1342 aa19.72■□□□□ 0.75
TPM1-202ENST00000288398 ANKRD24Q8TF21 1146 aa19.71■□□□□ 0.75
TPM1-202ENST00000288398 SPON1Q9HCB6 807 aa19.71■□□□□ 0.75
TPM1-202ENST00000288398 BCL9O00512 1426 aa19.7■□□□□ 0.74
TPM1-202ENST00000288398 TNS2Q63HR2 1409 aa19.7■□□□□ 0.74
TPM1-202ENST00000288398 IL2RBP14784 551 aa19.7■□□□□ 0.74
TPM1-202ENST00000288398 COG3Q96JB2 828 aa19.7■□□□□ 0.74
TPM1-202ENST00000288398 RGPD3A6NKT7 1758 aaPredicted RBP19.7■□□□□ 0.74
TPM1-202ENST00000288398 RGPD4Q7Z3J3 1758 aa19.7■□□□□ 0.74
TPM1-202ENST00000288398 USP54Q70EL1 1684 aa19.69■□□□□ 0.74
TPM1-202ENST00000288398 LTN1O94822 1766 aa19.67■□□□□ 0.74
TPM1-202ENST00000288398 SBF2Q86WG5 1849 aa19.67■□□□□ 0.74
TPM1-202ENST00000288398 DCAF8L1A6NGE4 600 aa19.67■□□□□ 0.74
TPM1-202ENST00000288398 TMF1P82094 1093 aa19.67■□□□□ 0.74
TPM1-202ENST00000288398 KCNQ2O43526 872 aa19.66■□□□□ 0.74
TPM1-202ENST00000288398 LTV1Q96GA3 475 aaPredicted RBP19.66■□□□□ 0.74
TPM1-202ENST00000288398 TESK2Q96S53 571 aa19.66■□□□□ 0.74
TPM1-202ENST00000288398 STK32BQ9NY57 414 aa19.66■□□□□ 0.74
TPM1-202ENST00000288398 AMPHP49418 695 aa19.65■□□□□ 0.74
TPM1-202ENST00000288398 PTF1AQ7RTS3 328 aa19.65■□□□□ 0.74
TPM1-202ENST00000288398 CDCA8Q53HL2 280 aa19.64■□□□□ 0.73
TPM1-202ENST00000288398 IP6K1Q92551 441 aa19.64■□□□□ 0.73
TPM1-202ENST00000288398 USP47Q96K76 1375 aa19.63■□□□□ 0.73
TPM1-202ENST00000288398 TXNRD1Q16881 649 aa19.63■□□□□ 0.73
TPM1-202ENST00000288398 ACSBG1Q96GR2 724 aa19.63■□□□□ 0.73
TPM1-202ENST00000288398 ANKRD36BQ8N2N9 1353 aa19.62■□□□□ 0.73
TPM1-202ENST00000288398 ANO8Q9HCE9 1232 aaPredicted RBP19.62■□□□□ 0.73
TPM1-202ENST00000288398 PROM2Q8N271 834 aa19.59■□□□□ 0.73
TPM1-202ENST00000288398 DDX54Q8TDD1 881 aaKnown RBP19.59■□□□□ 0.73
TPM1-202ENST00000288398 FAM208AQ9UK61 1670 aaKnown RBP19.59■□□□□ 0.73
TPM1-202ENST00000288398 MAP3K19Q56UN5 1328 aa19.58■□□□□ 0.73
TPM1-202ENST00000288398 NHSQ6T4R5 1651 aa19.58■□□□□ 0.72
TPM1-202ENST00000288398 HOXC9P31274 260 aa19.57■□□□□ 0.72
TPM1-202ENST00000288398 SLC15A2Q16348 729 aa19.57■□□□□ 0.72
TPM1-202ENST00000288398 SMG6Q86US8 1419 aaKnown RBP19.57■□□□□ 0.72
TPM1-202ENST00000288398 ZBTB7AO95365 584 aa19.56■□□□□ 0.72
TPM1-202ENST00000288398 RTL1A6NKG5 1358 aa19.56■□□□□ 0.72
TPM1-202ENST00000288398 SYTL4Q96C24 671 aaPredicted RBP19.55■□□□□ 0.72
TPM1-202ENST00000288398 GGNBP2Q9H3C7 697 aa19.55■□□□□ 0.72
TPM1-202ENST00000288398 TIMELESSQ9UNS1 1208 aa19.53■□□□□ 0.72
TPM1-202ENST00000288398 ATF5Q9Y2D1 282 aaPredicted RBP19.53■□□□□ 0.72
TPM1-202ENST00000288398 FYB1O15117 783 aa19.52■□□□□ 0.72
TPM1-202ENST00000288398 RRS1Q15050 365 aaKnown RBP19.52■□□□□ 0.72
TPM1-202ENST00000288398 CASZ1Q86V15 1759 aa19.52■□□□□ 0.71
TPM1-202ENST00000288398 FBLN1P23142 703 aa19.51■□□□□ 0.71
TPM1-202ENST00000288398 ZCRB1Q8TBF4 217 aaKnown RBP19.51■□□□□ 0.71
TPM1-202ENST00000288398 RAPGEF4Q8WZA2 1011 aa19.51■□□□□ 0.71
TPM1-202ENST00000288398 PCGF6Q9BYE7 350 aa19.51■□□□□ 0.71
TPM1-202ENST00000288398 KAT6BQ8WYB5 2073 aa19.51■□□□□ 0.71
TPM1-202ENST00000288398 PDGFDQ9GZP0 370 aaPredicted RBP19.5■□□□□ 0.71
TPM1-202ENST00000288398 MTFR1LQ9H019 292 aa19.5■□□□□ 0.71
TPM1-202ENST00000288398 BTAF1O14981 1849 aa19.49■□□□□ 0.71
TPM1-202ENST00000288398 YY1P25490 414 aa19.49■□□□□ 0.71
TPM1-202ENST00000288398 SLC27A3Q5K4L6 730 aa19.49■□□□□ 0.71
TPM1-202ENST00000288398 CGNL1Q0VF96 1302 aa19.48■□□□□ 0.71
TPM1-202ENST00000288398 CLSPNQ9HAW4 1339 aa19.48■□□□□ 0.71
TPM1-202ENST00000288398 TATP17735 454 aaPredicted RBP19.47■□□□□ 0.71
TPM1-202ENST00000288398 PRIM1P49642 420 aaKnown RBP19.47■□□□□ 0.71
TPM1-202ENST00000288398 FLT4P35916 1363 aa19.46■□□□□ 0.71
TPM1-202ENST00000288398 USHBP1Q8N6Y0 703 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms