RNA–Protein interactions for RNA: ENST00000277198.6

C9orf3-201, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2 BASIC

Gene C9orf3, Length 1,966 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-201ENST00000277198 SBNO1A3KN83 1393 aa16.68■□□□□ 0.26
C9orf3-201ENST00000277198 NGLY1Q96IV0 654 aa16.68■□□□□ 0.26
C9orf3-201ENST00000277198 SPINK5Q9NQ38 1064 aaPredicted RBP16.68■□□□□ 0.26
C9orf3-201ENST00000277198 CCDC61Q9Y6R9 512 aa16.68■□□□□ 0.26
C9orf3-201ENST00000277198 NSD3Q9BZ95 1437 aa16.67■□□□□ 0.26
C9orf3-201ENST00000277198 MORC1Q86VD1 984 aa16.67■□□□□ 0.26
C9orf3-201ENST00000277198 WWC1Q8IX03 1113 aa16.67■□□□□ 0.26
C9orf3-201ENST00000277198 ACEP12821 1306 aa16.67■□□□□ 0.26
C9orf3-201ENST00000277198 NSD2O96028 1365 aa16.67■□□□□ 0.26
C9orf3-201ENST00000277198 PPIP5K1Q6PFW1 1433 aa16.66■□□□□ 0.26
C9orf3-201ENST00000277198 ITSN1Q15811 1721 aa16.66■□□□□ 0.26
C9orf3-201ENST00000277198 ZNF772Q68DY9 489 aaPredicted RBP16.66■□□□□ 0.26
C9orf3-201ENST00000277198 RUNDC1Q96C34 613 aa16.66■□□□□ 0.26
C9orf3-201ENST00000277198 CCDC27Q2M243 656 aa16.65■□□□□ 0.26
C9orf3-201ENST00000277198 WDR63Q8IWG1 891 aa16.64■□□□□ 0.25
C9orf3-201ENST00000277198 CABP1Q9NZU7 370 aa16.64■□□□□ 0.25
C9orf3-201ENST00000277198 ALS2Q96Q42 1657 aa16.64■□□□□ 0.25
C9orf3-201ENST00000277198 PLEKHG3A1L390 1219 aa16.64■□□□□ 0.25
C9orf3-201ENST00000277198 NUTM2GQ5VZR2 741 aa16.64■□□□□ 0.25
C9orf3-201ENST00000277198 C8orf34Q49A92 452 aa16.63■□□□□ 0.25
C9orf3-201ENST00000277198 CFAP53Q96M91 514 aa16.63■□□□□ 0.25
C9orf3-201ENST00000277198 EVC2Q86UK5 1308 aa16.63■□□□□ 0.25
C9orf3-201ENST00000277198 ABCA3Q99758 1704 aa16.62■□□□□ 0.25
C9orf3-201ENST00000277198 ARHGEF10O15013 1369 aa16.62■□□□□ 0.25
C9orf3-201ENST00000277198 BCAR3O75815 825 aa16.62■□□□□ 0.25
C9orf3-201ENST00000277198 USP21Q9UK80 565 aa16.62■□□□□ 0.25
C9orf3-201ENST00000277198 FNBP4Q8N3X1 1017 aaPredicted RBP16.62■□□□□ 0.25
C9orf3-201ENST00000277198 SLC12A5Q9H2X9 1139 aa16.62■□□□□ 0.25
C9orf3-201ENST00000277198 QTRT2Q9H974 415 aaKnown RBP16.62■□□□□ 0.25
C9orf3-201ENST00000277198 ANKRD36BQ8N2N9 1353 aa16.61■□□□□ 0.25
C9orf3-201ENST00000277198 HAP1P54257 671 aaPredicted RBP16.61■□□□□ 0.25
C9orf3-201ENST00000277198 BCL9LQ86UU0 1499 aa16.61■□□□□ 0.25
C9orf3-201ENST00000277198 MARF1Q9Y4F3 1742 aaKnown RBP16.6■□□□□ 0.25
C9orf3-201ENST00000277198 MAPK8IP3Q9UPT6 1336 aa16.59■□□□□ 0.25
C9orf3-201ENST00000277198 RXRBP28702 533 aa16.59■□□□□ 0.25
C9orf3-201ENST00000277198 CLUAP1Q96AJ1 413 aa16.59■□□□□ 0.25
C9orf3-201ENST00000277198 NEFMP07197 916 aa16.58■□□□□ 0.25
C9orf3-201ENST00000277198 SKAP1Q86WV1 359 aa16.58■□□□□ 0.25
C9orf3-201ENST00000277198 FAM83GA6ND36 823 aa16.57■□□□□ 0.24
C9orf3-201ENST00000277198 TCP11L2Q8N4U5 519 aa16.57■□□□□ 0.24
C9orf3-201ENST00000277198 DAXXQ9UER7 740 aaPredicted RBP16.57■□□□□ 0.24
C9orf3-201ENST00000277198 CRYBG1Q9Y4K1 1723 aa16.57■□□□□ 0.24
C9orf3-201ENST00000277198 ATRNO75882 1429 aa16.57■□□□□ 0.24
C9orf3-201ENST00000277198 SLIT2O94813 1529 aa16.56■□□□□ 0.24
C9orf3-201ENST00000277198 RGS12O14924 1447 aa16.56■□□□□ 0.24
C9orf3-201ENST00000277198 USP6P35125 1406 aa16.56■□□□□ 0.24
C9orf3-201ENST00000277198 CT47B1P0C2W7 299 aaPredicted RBP16.56■□□□□ 0.24
C9orf3-201ENST00000277198 CANXP27824 592 aaKnown RBP16.56■□□□□ 0.24
C9orf3-201ENST00000277198 MTHFSP49914 203 aa16.56■□□□□ 0.24
C9orf3-201ENST00000277198 RARSP54136 660 aaKnown RBP16.56■□□□□ 0.24
C9orf3-201ENST00000277198 ABTB2Q8N961 1025 aa16.55■□□□□ 0.24
C9orf3-201ENST00000277198 MYH16Q9H6N6 1097 aa16.55■□□□□ 0.24
C9orf3-201ENST00000277198 TRPC5Q9UL62 973 aaPredicted RBP16.55■□□□□ 0.24
C9orf3-201ENST00000277198 RBM6P78332 1123 aaKnown RBP16.54■□□□□ 0.24
C9orf3-201ENST00000277198 LAS1LQ9Y4W2 734 aaKnown RBP16.54■□□□□ 0.24
C9orf3-201ENST00000277198 SSH2Q76I76 1423 aa16.53■□□□□ 0.24
C9orf3-201ENST00000277198 PLCH1Q4KWH8 1693 aa16.53■□□□□ 0.24
C9orf3-201ENST00000277198 ATAD2Q6PL18 1390 aa16.53■□□□□ 0.24
C9orf3-201ENST00000277198 IGHDP01880 384 aa16.53■□□□□ 0.24
C9orf3-201ENST00000277198 RGS3P49796 1198 aa16.53■□□□□ 0.24
C9orf3-201ENST00000277198 CHRNA2Q15822 529 aa16.53■□□□□ 0.24
C9orf3-201ENST00000277198 UNC5CLQ8IV45 518 aa16.53■□□□□ 0.24
C9orf3-201ENST00000277198 PHRF1Q9P1Y6 1649 aaKnown RBP16.52■□□□□ 0.24
C9orf3-201ENST00000277198 KIAA0232Q92628 1395 aa16.52■□□□□ 0.24
C9orf3-201ENST00000277198 ZC3H6P61129 1189 aaKnown RBP16.52■□□□□ 0.24
C9orf3-201ENST00000277198 CD163L1Q9NR16 1453 aa16.52■□□□□ 0.23
C9orf3-201ENST00000277198 EP400Q96L91 3159 aa16.52■□□□□ 0.23
C9orf3-201ENST00000277198 CPSF1Q10570 1443 aaKnown RBP16.51■□□□□ 0.23
C9orf3-201ENST00000277198 COG6Q9Y2V7 657 aa16.51■□□□□ 0.23
C9orf3-201ENST00000277198 NRKQ7Z2Y5 1582 aa16.5■□□□□ 0.23
C9orf3-201ENST00000277198 PANK1Q8TE04 598 aa16.5■□□□□ 0.23
C9orf3-201ENST00000277198 BTG4Q9NY30 223 aa16.5■□□□□ 0.23
C9orf3-201ENST00000277198 USP19O94966 1318 aa16.5■□□□□ 0.23
C9orf3-201ENST00000277198 GLI3P10071 1580 aa16.5■□□□□ 0.23
C9orf3-201ENST00000277198 PIK3C2AO00443 1686 aa16.5■□□□□ 0.23
C9orf3-201ENST00000277198 TNNT2P45379 298 aaPredicted RBP16.49■□□□□ 0.23
C9orf3-201ENST00000277198 GJD4Q96KN9 370 aaPredicted RBP16.49■□□□□ 0.23
C9orf3-201ENST00000277198 PRDM11Q9NQV5 511 aa16.49■□□□□ 0.23
C9orf3-201ENST00000277198 CDK12Q9NYV4 1490 aaPredicted RBP16.49■□□□□ 0.23
C9orf3-201ENST00000277198 ZRANB1Q9UGI0 708 aa16.49■□□□□ 0.23
C9orf3-201ENST00000277198 TTC21BQ7Z4L5 1316 aa16.49■□□□□ 0.23
C9orf3-201ENST00000277198 AKAP12Q02952 1782 aa16.49■□□□□ 0.23
C9orf3-201ENST00000277198 NLRP6P59044 892 aa16.48■□□□□ 0.23
C9orf3-201ENST00000277198 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.48■□□□□ 0.23
C9orf3-201ENST00000277198 NEUROD2Q15784 382 aa16.47■□□□□ 0.23
C9orf3-201ENST00000277198 NRAPQ86VF7 1730 aa16.47■□□□□ 0.23
C9orf3-201ENST00000277198 U2AF1L5P0DN76 240 aaPredicted RBP16.47■□□□□ 0.23
C9orf3-201ENST00000277198 U2AF1Q01081 240 aaKnown RBP eCLIP16.47■□□□□ 0.23
C9orf3-201ENST00000277198 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.47■□□□□ 0.234e-7■■□□□ 13.5
C9orf3-201ENST00000277198 FRAT1Q92837 279 aaPredicted RBP16.47■□□□□ 0.23
C9orf3-201ENST00000277198 RRP7AQ9Y3A4 280 aaKnown RBP16.47■□□□□ 0.23
C9orf3-201ENST00000277198 A0A1W2PP64 1363 aa16.46■□□□□ 0.23
C9orf3-201ENST00000277198 IL16Q14005 1332 aa16.46■□□□□ 0.23
C9orf3-201ENST00000277198 RWDD1Q9H446 243 aaPredicted RBP16.46■□□□□ 0.23
C9orf3-201ENST00000277198 CCDC9Q9Y3X0 531 aaKnown RBP16.46■□□□□ 0.23
C9orf3-201ENST00000277198 COL14A1Q05707 1796 aaKnown RBP16.46■□□□□ 0.23
C9orf3-201ENST00000277198 NWD2Q9ULI1 1742 aa16.46■□□□□ 0.23
C9orf3-201ENST00000277198 SOX12O15370 315 aa16.46■□□□□ 0.22
C9orf3-201ENST00000277198 GCP02774 474 aa16.46■□□□□ 0.22
C9orf3-201ENST00000277198 NFKBIBQ15653 356 aa16.46■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms