RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 A0A1W2PP64 1363 aa13.4□□□□□ -0.26
UPF3B-201ENST00000276201 USP19O94966 1318 aa13.4□□□□□ -0.26
UPF3B-201ENST00000276201 GSE1Q14687 1217 aa13.4□□□□□ -0.26
UPF3B-201ENST00000276201 NPM2Q86SE8 214 aaKnown RBP13.4□□□□□ -0.26
UPF3B-201ENST00000276201 FNBP4Q8N3X1 1017 aaPredicted RBP13.4□□□□□ -0.26
UPF3B-201ENST00000276201 MYOM1P52179 1685 aa13.39□□□□□ -0.27
UPF3B-201ENST00000276201 CDCA8Q53HL2 280 aa13.39□□□□□ -0.27
UPF3B-201ENST00000276201 HDGFL2Q7Z4V5 671 aaPredicted RBP13.39□□□□□ -0.27
UPF3B-201ENST00000276201 LAS1LQ9Y4W2 734 aaKnown RBP13.39□□□□□ -0.27
UPF3B-201ENST00000276201 SLIT2O94813 1529 aa13.38□□□□□ -0.27
UPF3B-201ENST00000276201 CRBNQ96SW2 442 aa13.38□□□□□ -0.27
UPF3B-201ENST00000276201 ANO8Q9HCE9 1232 aaPredicted RBP13.38□□□□□ -0.27
UPF3B-201ENST00000276201 TERF2IPQ9NYB0 399 aa13.38□□□□□ -0.27
UPF3B-201ENST00000276201 BCL9LQ86UU0 1499 aa13.38□□□□□ -0.27
UPF3B-201ENST00000276201 PLCH1Q4KWH8 1693 aa13.38□□□□□ -0.27
UPF3B-201ENST00000276201 TTC21AQ8NDW8 1320 aa13.38□□□□□ -0.27
UPF3B-201ENST00000276201 USP21Q9UK80 565 aa13.38□□□□□ -0.27
UPF3B-201ENST00000276201 EDC4Q6P2E9 1401 aaKnown RBP13.38□□□□□ -0.27
UPF3B-201ENST00000276201 SLIT3O75094 1523 aa13.37□□□□□ -0.27
UPF3B-201ENST00000276201 FAM83GA6ND36 823 aa13.37□□□□□ -0.27
UPF3B-201ENST00000276201 ANKRD36BQ8N2N9 1353 aa13.37□□□□□ -0.27
UPF3B-201ENST00000276201 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.36□□□□□ -0.27
UPF3B-201ENST00000276201 NLRP6P59044 892 aa13.36□□□□□ -0.27
UPF3B-201ENST00000276201 NFKBIBQ15653 356 aa13.36□□□□□ -0.27
UPF3B-201ENST00000276201 FAM161AQ3B820 660 aa13.36□□□□□ -0.27
UPF3B-201ENST00000276201 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.36□□□□□ -0.27
UPF3B-201ENST00000276201 SALL2Q9Y467 1007 aaPredicted RBP13.36□□□□□ -0.27
UPF3B-201ENST00000276201 COL14A1Q05707 1796 aaKnown RBP13.36□□□□□ -0.27
UPF3B-201ENST00000276201 ATRNO75882 1429 aa13.36□□□□□ -0.27
UPF3B-201ENST00000276201 NWD2Q9ULI1 1742 aa13.36□□□□□ -0.27
UPF3B-201ENST00000276201 KIAA0232Q92628 1395 aa13.36□□□□□ -0.27
UPF3B-201ENST00000276201 ZNF521Q96K83 1311 aa13.35□□□□□ -0.27
UPF3B-201ENST00000276201 CDCA7LQ96GN5 454 aa13.35□□□□□ -0.27
UPF3B-201ENST00000276201 QTRT2Q9H974 415 aaKnown RBP13.35□□□□□ -0.27
UPF3B-201ENST00000276201 USP54Q70EL1 1684 aa13.35□□□□□ -0.27
UPF3B-201ENST00000276201 NPC1L1Q9UHC9 1359 aa13.35□□□□□ -0.27
UPF3B-201ENST00000276201 NME9Q86XW9 330 aa13.35□□□□□ -0.27
UPF3B-201ENST00000276201 GCP02774 474 aa13.34□□□□□ -0.27
UPF3B-201ENST00000276201 ZC3H6P61129 1189 aaKnown RBP13.34□□□□□ -0.27
UPF3B-201ENST00000276201 PRDM11Q9NQV5 511 aa13.34□□□□□ -0.27
UPF3B-201ENST00000276201 ZRANB1Q9UGI0 708 aa13.34□□□□□ -0.27
UPF3B-201ENST00000276201 NRAPQ86VF7 1730 aa13.34□□□□□ -0.27
UPF3B-201ENST00000276201 USP31Q70CQ4 1352 aa13.34□□□□□ -0.27
UPF3B-201ENST00000276201 UNC5CLQ8IV45 518 aa13.34□□□□□ -0.27
UPF3B-201ENST00000276201 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.34□□□□□ -0.27
UPF3B-201ENST00000276201 CPDO75976 1380 aa13.33□□□□□ -0.28
UPF3B-201ENST00000276201 TRPC5Q9UL62 973 aaPredicted RBP13.33□□□□□ -0.28
UPF3B-201ENST00000276201 RXRBP28702 533 aa13.32□□□□□ -0.28
UPF3B-201ENST00000276201 CHRNA2Q15822 529 aa13.32□□□□□ -0.28
UPF3B-201ENST00000276201 C8orf34Q49A92 452 aa13.32□□□□□ -0.28
UPF3B-201ENST00000276201 NFAT5O94916 1531 aa13.32□□□□□ -0.28
UPF3B-201ENST00000276201 RBM6P78332 1123 aaKnown RBP13.31□□□□□ -0.28
UPF3B-201ENST00000276201 NGEFQ8N5V2 710 aa13.31□□□□□ -0.28
UPF3B-201ENST00000276201 BTG4Q9NY30 223 aa13.31□□□□□ -0.28
UPF3B-201ENST00000276201 LMO7Q8WWI1 1683 aa13.31□□□□□ -0.28
UPF3B-201ENST00000276201 OVOS2A0A0J9YW53 1432 aa13.31□□□□□ -0.28
UPF3B-201ENST00000276201 OVOS2Q6IE36 1432 aa13.31□□□□□ -0.28
UPF3B-201ENST00000276201 DUSP27Q5VZP5 1158 aa13.31□□□□□ -0.28
UPF3B-201ENST00000276201 TRMT2AQ8IZ69 625 aaKnown RBP13.31□□□□□ -0.28
UPF3B-201ENST00000276201 CDK12Q9NYV4 1490 aaPredicted RBP13.3□□□□□ -0.28
UPF3B-201ENST00000276201 CARD14Q9BXL6 1004 aa13.3□□□□□ -0.28
UPF3B-201ENST00000276201 GLI3P10071 1580 aa13.3□□□□□ -0.28
UPF3B-201ENST00000276201 CNGB1Q14028 1251 aaPredicted RBP13.3□□□□□ -0.28
UPF3B-201ENST00000276201 CAMTA1Q9Y6Y1 1673 aa13.29□□□□□ -0.28
UPF3B-201ENST00000276201 VPS72Q15906 364 aa13.29□□□□□ -0.28
UPF3B-201ENST00000276201 RGS12O14924 1447 aa13.29□□□□□ -0.28
UPF3B-201ENST00000276201 SOX12O15370 315 aa13.29□□□□□ -0.28
UPF3B-201ENST00000276201 DAXXQ9UER7 740 aaPredicted RBP13.29□□□□□ -0.28
UPF3B-201ENST00000276201 NSD3Q9BZ95 1437 aa13.29□□□□□ -0.28
UPF3B-201ENST00000276201 PLIN1O60240 522 aa13.28□□□□□ -0.28
UPF3B-201ENST00000276201 KCNH5Q8NCM2 988 aa13.28□□□□□ -0.28
UPF3B-201ENST00000276201 GJD4Q96KN9 370 aaPredicted RBP13.28□□□□□ -0.28
UPF3B-201ENST00000276201 PANK3Q9H999 370 aa13.28□□□□□ -0.28
UPF3B-201ENST00000276201 COL18A1P39060 1754 aa13.28□□□□□ -0.28
UPF3B-201ENST00000276201 ARHGEF25Q86VW2 580 aa13.28□□□□□ -0.28
UPF3B-201ENST00000276201 KIF20BQ96Q89 1820 aa13.27□□□□□ -0.28
UPF3B-201ENST00000276201 AATKQ6ZMQ8 1374 aa13.27□□□□□ -0.28
UPF3B-201ENST00000276201 ZBTB7CA1YPR0 619 aa13.27□□□□□ -0.29
UPF3B-201ENST00000276201 FAM43AQ8N2R8 423 aa13.27□□□□□ -0.29
UPF3B-201ENST00000276201 FRAT1Q92837 279 aaPredicted RBP13.27□□□□□ -0.29
UPF3B-201ENST00000276201 FYB1O15117 783 aa13.27□□□□□ -0.29
UPF3B-201ENST00000276201 SOCS7O14512 581 aa13.26□□□□□ -0.29
UPF3B-201ENST00000276201 GOLGA2Q08379 1002 aa13.25□□□□□ -0.29
UPF3B-201ENST00000276201 SLFN5Q08AF3 891 aa13.25□□□□□ -0.29
UPF3B-201ENST00000276201 CCDC9Q9Y3X0 531 aaKnown RBP13.25□□□□□ -0.29
UPF3B-201ENST00000276201 COL5A2P05997 1499 aaPredicted RBP13.25□□□□□ -0.29
UPF3B-201ENST00000276201 C20orf194Q5TEA3 1177 aa13.25□□□□□ -0.29
UPF3B-201ENST00000276201 COG3Q96JB2 828 aa13.25□□□□□ -0.29
UPF3B-201ENST00000276201 GGNBP2Q9H3C7 697 aa13.25□□□□□ -0.29
UPF3B-201ENST00000276201 STRN4Q9NRL3 753 aa13.25□□□□□ -0.29
UPF3B-201ENST00000276201 SPATA31A5Q5VU36 1347 aa13.25□□□□□ -0.29
UPF3B-201ENST00000276201 SPATA31A7Q8IWB4 1347 aa13.25□□□□□ -0.29
UPF3B-201ENST00000276201 AAMPQ13685 434 aa13.24□□□□□ -0.29
UPF3B-201ENST00000276201 BRPF3Q9ULD4 1205 aa13.24□□□□□ -0.29
UPF3B-201ENST00000276201 ADAMTS8Q9UP79 889 aa13.24□□□□□ -0.29
UPF3B-201ENST00000276201 LTN1O94822 1766 aa13.24□□□□□ -0.29
UPF3B-201ENST00000276201 ABCC6O95255 1503 aa13.24□□□□□ -0.29
UPF3B-201ENST00000276201 SENP3-EIF4A1A0A087X0R7 540 aa13.24□□□□□ -0.29
UPF3B-201ENST00000276201 PPP2R1AP30153 589 aa13.24□□□□□ -0.29
UPF3B-201ENST00000276201 AXIN2Q9Y2T1 843 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms