RNA–Protein interactions for RNA: ENST00000266085.6

TIMP3-201, Transcript of TIMP metallopeptidase inhibitor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TIMP3, Length 4,603 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP3-201ENST00000266085 ACEP12821 1306 aa18.62■□□□□ 0.57
TIMP3-201ENST00000266085 CCDC27Q2M243 656 aa18.62■□□□□ 0.57
TIMP3-201ENST00000266085 NFXL1Q6ZNB6 911 aa18.62■□□□□ 0.57
TIMP3-201ENST00000266085 TRIM34Q9BYJ4 488 aa18.62■□□□□ 0.57
TIMP3-201ENST00000266085 SSH1Q8WYL5 1049 aa18.62■□□□□ 0.57
TIMP3-201ENST00000266085 TEX14Q8IWB6 1497 aa18.62■□□□□ 0.57
TIMP3-201ENST00000266085 ERICH2A1L162 156 aa18.62■□□□□ 0.57
TIMP3-201ENST00000266085 PTCD1O75127 700 aaKnown RBP18.62■□□□□ 0.57
TIMP3-201ENST00000266085 TMEM57Q8N5G2 664 aa18.62■□□□□ 0.57
TIMP3-201ENST00000266085 KLHL34Q8N239 644 aa18.61■□□□□ 0.57
TIMP3-201ENST00000266085 SRGAP3O43295 1099 aa18.61■□□□□ 0.57
TIMP3-201ENST00000266085 CNNM1Q9NRU3 951 aa18.61■□□□□ 0.57
TIMP3-201ENST00000266085 FBLN1P23142 703 aa18.61■□□□□ 0.57
TIMP3-201ENST00000266085 LRRCC1Q9C099 1032 aa18.61■□□□□ 0.57
TIMP3-201ENST00000266085 UHRF1BP1LA0JNW5 1464 aa18.6■□□□□ 0.57
TIMP3-201ENST00000266085 DHX16O60231 1041 aaKnown RBP18.6■□□□□ 0.57
TIMP3-201ENST00000266085 BICD2Q8TD16 824 aa18.6■□□□□ 0.57
TIMP3-201ENST00000266085 KRT28Q7Z3Y7 464 aa18.59■□□□□ 0.57
TIMP3-201ENST00000266085 ITSN2Q9NZM3 1697 aa18.59■□□□□ 0.57
TIMP3-201ENST00000266085 FYB1O15117 783 aa18.59■□□□□ 0.57
TIMP3-201ENST00000266085 RARSP54136 660 aaKnown RBP18.59■□□□□ 0.57
TIMP3-201ENST00000266085 TAF7Q15545 349 aaPredicted RBP18.59■□□□□ 0.57
TIMP3-201ENST00000266085 IFT57Q9NWB7 429 aa18.59■□□□□ 0.57
TIMP3-201ENST00000266085 TBC1D2BQ9UPU7 963 aa18.59■□□□□ 0.57
TIMP3-201ENST00000266085 ABCC11Q96J66 1382 aa18.59■□□□□ 0.57
TIMP3-201ENST00000266085 PSMA5P28066 241 aa18.59■□□□□ 0.57
TIMP3-201ENST00000266085 ABCC10Q5T3U5 1492 aa18.58■□□□□ 0.57
TIMP3-201ENST00000266085 MAPKBP1O60336 1514 aa18.58■□□□□ 0.57
TIMP3-201ENST00000266085 NEK4P51957 841 aa18.58■□□□□ 0.57
TIMP3-201ENST00000266085 PHF23Q9BUL5 403 aaPredicted RBP18.58■□□□□ 0.57
TIMP3-201ENST00000266085 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.58■□□□□ 0.56
TIMP3-201ENST00000266085 TPD52L1Q16890 204 aaPredicted RBP18.58■□□□□ 0.56
TIMP3-201ENST00000266085 AMOTQ4VCS5 1084 aa18.58■□□□□ 0.56
TIMP3-201ENST00000266085 TCOF1Q13428 1488 aaKnown RBP18.58■□□□□ 0.56
TIMP3-201ENST00000266085 DISP1Q96F81 1524 aa18.57■□□□□ 0.56
TIMP3-201ENST00000266085 HIP1O00291 1037 aa18.57■□□□□ 0.56
TIMP3-201ENST00000266085 MPRIPQ6WCQ1 1025 aa18.57■□□□□ 0.56
TIMP3-201ENST00000266085 RPAP2Q8IXW5 612 aaPredicted RBP18.57■□□□□ 0.56
TIMP3-201ENST00000266085 PES1O00541 588 aaKnown RBP18.56■□□□□ 0.56
TIMP3-201ENST00000266085 NSD2O96028 1365 aa18.56■□□□□ 0.56
TIMP3-201ENST00000266085 ADAMTS2O95450 1211 aa18.56■□□□□ 0.56
TIMP3-201ENST00000266085 CADPS2Q86UW7 1296 aa18.56■□□□□ 0.56
TIMP3-201ENST00000266085 CHD1LQ86WJ1 897 aa18.56■□□□□ 0.56
TIMP3-201ENST00000266085 BACH2Q9BYV9 841 aa18.56■□□□□ 0.56
TIMP3-201ENST00000266085 IL1RAPL2Q9NP60 686 aa18.56■□□□□ 0.56
TIMP3-201ENST00000266085 ABCC2Q92887 1545 aa18.56■□□□□ 0.56
TIMP3-201ENST00000266085 CCDC57Q2TAC2 916 aa18.56■□□□□ 0.56
TIMP3-201ENST00000266085 RABEP1Q15276 862 aa18.55■□□□□ 0.56
TIMP3-201ENST00000266085 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.55■□□□□ 0.56
TIMP3-201ENST00000266085 MCM2P49736 904 aa18.55■□□□□ 0.56
TIMP3-201ENST00000266085 FOSBP53539 338 aa18.55■□□□□ 0.56
TIMP3-201ENST00000266085 SAFBQ15424 915 aaKnown RBP eCLIP18.55■□□□□ 0.56
TIMP3-201ENST00000266085 CCDC158Q5M9N0 1113 aa18.55■□□□□ 0.56
TIMP3-201ENST00000266085 C20orf194Q5TEA3 1177 aa18.55■□□□□ 0.56
TIMP3-201ENST00000266085 PRAG1Q86YV5 1406 aa18.55■□□□□ 0.56
TIMP3-201ENST00000266085 NFKBIBQ15653 356 aa18.54■□□□□ 0.56
TIMP3-201ENST00000266085 TPM3P06753 285 aa18.53■□□□□ 0.56
TIMP3-201ENST00000266085 EXOC6BQ9Y2D4 811 aa18.53■□□□□ 0.56
TIMP3-201ENST00000266085 MPHOSPH8Q99549 860 aa18.53■□□□□ 0.56
TIMP3-201ENST00000266085 TTC21BQ7Z4L5 1316 aa18.53■□□□□ 0.56
TIMP3-201ENST00000266085 RALGAPBQ86X10 1494 aa18.53■□□□□ 0.56
TIMP3-201ENST00000266085 STARD3NLO95772 234 aa18.52■□□□□ 0.56
TIMP3-201ENST00000266085 ALDH1L2Q3SY69 923 aa18.52■□□□□ 0.56
TIMP3-201ENST00000266085 CCDC85AQ96PX6 553 aaPredicted RBP18.52■□□□□ 0.56
TIMP3-201ENST00000266085 CEP126Q9P2H0 1117 aa18.52■□□□□ 0.56
TIMP3-201ENST00000266085 RIMS2Q9UQ26 1411 aa18.52■□□□□ 0.56
TIMP3-201ENST00000266085 HSP90AB2PQ58FF8 381 aa18.52■□□□□ 0.55
TIMP3-201ENST00000266085 CCDC73Q6ZRK6 1079 aa18.51■□□□□ 0.55
TIMP3-201ENST00000266085 AACSQ86V21 672 aa18.51■□□□□ 0.55
TIMP3-201ENST00000266085 TMOD3Q9NYL9 352 aa18.51■□□□□ 0.55
TIMP3-201ENST00000266085 TTC39AQ5SRH9 613 aa18.51■□□□□ 0.55
TIMP3-201ENST00000266085 F6X3S4 739 aa18.51■□□□□ 0.55
TIMP3-201ENST00000266085 TESK2Q96S53 571 aa18.51■□□□□ 0.55
TIMP3-201ENST00000266085 ANKRD36BQ8N2N9 1353 aa18.5■□□□□ 0.55
TIMP3-201ENST00000266085 MAP4K4O95819 1239 aaPredicted RBP18.5■□□□□ 0.55
TIMP3-201ENST00000266085 TSR1Q2NL82 804 aaKnown RBP18.5■□□□□ 0.55
TIMP3-201ENST00000266085 CHRNA2Q15822 529 aa18.5■□□□□ 0.55
TIMP3-201ENST00000266085 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.5■□□□□ 0.55
TIMP3-201ENST00000266085 FAM83GA6ND36 823 aa18.5■□□□□ 0.55
TIMP3-201ENST00000266085 HOOK1Q9UJC3 728 aaKnown RBP18.5■□□□□ 0.55
TIMP3-201ENST00000266085 NKTRP30414 1462 aaKnown RBP18.49■□□□□ 0.55
TIMP3-201ENST00000266085 TPM1P09493 284 aa18.49■□□□□ 0.55
TIMP3-201ENST00000266085 PDCP20941 246 aa18.49■□□□□ 0.55
TIMP3-201ENST00000266085 SART3Q15020 963 aaKnown RBP18.49■□□□□ 0.55
TIMP3-201ENST00000266085 LARP1Q6PKG0 1096 aaKnown RBP18.48■□□□□ 0.55
TIMP3-201ENST00000266085 CTDP1Q9Y5B0 961 aaPredicted RBP18.48■□□□□ 0.55
TIMP3-201ENST00000266085 GNL3LQ9NVN8 582 aaKnown RBP18.48■□□□□ 0.55
TIMP3-201ENST00000266085 DMRT2Q9Y5R5 561 aa18.48■□□□□ 0.55
TIMP3-201ENST00000266085 CCDC47Q96A33 483 aaKnown RBP18.48■□□□□ 0.55
TIMP3-201ENST00000266085 MTMR7Q9Y216 660 aa18.48■□□□□ 0.55
TIMP3-201ENST00000266085 SAMD1Q6SPF0 538 aaPredicted RBP18.47■□□□□ 0.55
TIMP3-201ENST00000266085 LRPPRCP42704 1394 aaKnown RBP18.47■□□□□ 0.55
TIMP3-201ENST00000266085 BICDL1Q6ZP65 573 aa18.47■□□□□ 0.55
TIMP3-201ENST00000266085 SHANK2Q9UPX8 1470 aa18.47■□□□□ 0.55
TIMP3-201ENST00000266085 FKBP4Q02790 459 aaKnown RBP eCLIP18.46■□□□□ 0.55
TIMP3-201ENST00000266085 SASS6Q6UVJ0 657 aa18.46■□□□□ 0.55
TIMP3-201ENST00000266085 RRP12Q5JTH9 1297 aaKnown RBP18.46■□□□□ 0.55
TIMP3-201ENST00000266085 ANKRD24Q8TF21 1146 aa18.46■□□□□ 0.55
TIMP3-201ENST00000266085 NGLY1Q96IV0 654 aa18.46■□□□□ 0.55
TIMP3-201ENST00000266085 ZMYM3Q14202 1370 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms