RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 NCLP19338 710 aaKnown RBP16.28■□□□□ 0.2
NUP54-201ENST00000264883 HDAC1Q13547 482 aaPredicted RBP16.28■□□□□ 0.2
NUP54-201ENST00000264883 KLHL40Q2TBA0 621 aa16.28■□□□□ 0.2
NUP54-201ENST00000264883 SASS6Q6UVJ0 657 aa16.28■□□□□ 0.2
NUP54-201ENST00000264883 DDX49Q9Y6V7 483 aaKnown RBP16.28■□□□□ 0.2
NUP54-201ENST00000264883 ARHGEF28Q8N1W1 1705 aaKnown RBP16.28■□□□□ 0.2
NUP54-201ENST00000264883 ALKQ9UM73 1620 aa16.27■□□□□ 0.19
NUP54-201ENST00000264883 RBM25P49756 843 aaKnown RBP16.27■□□□□ 0.19
NUP54-201ENST00000264883 DZIP1LQ8IYY4 767 aaKnown RBP16.27■□□□□ 0.19
NUP54-201ENST00000264883 TNNQ9UQP3 1299 aa16.27■□□□□ 0.19
NUP54-201ENST00000264883 ZSCAN20P17040 1043 aaPredicted RBP16.26■□□□□ 0.19
NUP54-201ENST00000264883 FTSJ3Q8IY81 847 aaKnown RBP16.26■□□□□ 0.19
NUP54-201ENST00000264883 SETD1AO15047 1707 aaKnown RBP16.26■□□□□ 0.19
NUP54-201ENST00000264883 RIMS1Q86UR5 1692 aaKnown RBP16.26■□□□□ 0.19
NUP54-201ENST00000264883 TNNT2P45379 298 aaPredicted RBP16.26■□□□□ 0.19
NUP54-201ENST00000264883 ZKSCAN5Q9Y2L8 839 aa16.26■□□□□ 0.19
NUP54-201ENST00000264883 ANKRD36BQ8N2N9 1353 aa16.25■□□□□ 0.19
NUP54-201ENST00000264883 ABCC11Q96J66 1382 aa16.25■□□□□ 0.19
NUP54-201ENST00000264883 ZNF445P59923 1031 aa16.25■□□□□ 0.19
NUP54-201ENST00000264883 PDLIM2Q96JY6 352 aa16.25■□□□□ 0.19
NUP54-201ENST00000264883 DDX19BQ9UMR2 479 aa16.25■□□□□ 0.19
NUP54-201ENST00000264883 MTHFSP49914 203 aa16.24■□□□□ 0.19
NUP54-201ENST00000264883 NEUROD2Q15784 382 aa16.24■□□□□ 0.19
NUP54-201ENST00000264883 TRAK1Q9UPV9 953 aa16.24■□□□□ 0.19
NUP54-201ENST00000264883 IL16Q14005 1332 aa16.24■□□□□ 0.19
NUP54-201ENST00000264883 MCM5P33992 734 aa16.24■□□□□ 0.19
NUP54-201ENST00000264883 CEBPAP49715 358 aaPredicted RBP16.24■□□□□ 0.19
NUP54-201ENST00000264883 FOXD4L1Q9NU39 408 aa16.24■□□□□ 0.19
NUP54-201ENST00000264883 RRP7AQ9Y3A4 280 aaKnown RBP16.24■□□□□ 0.19
NUP54-201ENST00000264883 NRXN3Q9Y4C0 1643 aa16.24■□□□□ 0.19
NUP54-201ENST00000264883 SSFA2P28290 1259 aa16.23■□□□□ 0.19
NUP54-201ENST00000264883 BBXQ8WY36 941 aaPredicted RBP16.23■□□□□ 0.19
NUP54-201ENST00000264883 PTPRMP28827 1452 aa16.23■□□□□ 0.19
NUP54-201ENST00000264883 TMEM2Q9UHN6 1383 aa16.22■□□□□ 0.19
NUP54-201ENST00000264883 EVC2Q86UK5 1308 aa16.22■□□□□ 0.19
NUP54-201ENST00000264883 CLEC17AQ6ZS10 378 aa16.21■□□□□ 0.19
NUP54-201ENST00000264883 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.21■□□□□ 0.19
NUP54-201ENST00000264883 SLC12A5Q9H2X9 1139 aa16.21■□□□□ 0.19
NUP54-201ENST00000264883 BAG4O95429 457 aaKnown RBP16.21■□□□□ 0.19
NUP54-201ENST00000264883 GTPBP4Q9BZE4 634 aaKnown RBP16.21■□□□□ 0.19
NUP54-201ENST00000264883 RBSNQ9H1K0 784 aa16.21■□□□□ 0.19
NUP54-201ENST00000264883 YTHDC2Q9H6S0 1430 aaKnown RBP16.21■□□□□ 0.18
NUP54-201ENST00000264883 ZSCAN23Q3MJ62 389 aa16.2■□□□□ 0.18
NUP54-201ENST00000264883 PPP4R3BQ5MIZ7 849 aa16.2■□□□□ 0.18
NUP54-201ENST00000264883 BCL2L13Q9BXK5 485 aa16.2■□□□□ 0.18
NUP54-201ENST00000264883 KIF16BQ96L93 1317 aa16.19■□□□□ 0.18
NUP54-201ENST00000264883 MED14O60244 1454 aa16.19■□□□□ 0.18
NUP54-201ENST00000264883 K7ELQ4 463 aaPredicted RBP16.19■□□□□ 0.18
NUP54-201ENST00000264883 KIF20AO95235 890 aa16.19■□□□□ 0.18
NUP54-201ENST00000264883 U2AF1L5P0DN76 240 aaPredicted RBP16.19■□□□□ 0.18
NUP54-201ENST00000264883 U2AF1Q01081 240 aaKnown RBP eCLIP16.19■□□□□ 0.18
NUP54-201ENST00000264883 CAVIN1Q6NZI2 390 aaKnown RBP16.19■□□□□ 0.18
NUP54-201ENST00000264883 SMC4Q9NTJ3 1288 aa16.19■□□□□ 0.18
NUP54-201ENST00000264883 CCDC39Q9UFE4 941 aa16.19■□□□□ 0.18
NUP54-201ENST00000264883 IPO8O15397 1037 aaKnown RBP16.18■□□□□ 0.18
NUP54-201ENST00000264883 GTF2E1P29083 439 aaPredicted RBP16.18■□□□□ 0.18
NUP54-201ENST00000264883 ATF7IPQ6VMQ6 1270 aa16.18■□□□□ 0.18
NUP54-201ENST00000264883 TULP4Q9NRJ4 1543 aa16.18■□□□□ 0.18
NUP54-201ENST00000264883 CHMP4BQ9H444 224 aaKnown RBP16.18■□□□□ 0.18
NUP54-201ENST00000264883 ANKRD26Q9UPS8 1709 aa16.17■□□□□ 0.18
NUP54-201ENST00000264883 ARHGAP23Q9P227 1491 aa16.17■□□□□ 0.18
NUP54-201ENST00000264883 SLIT1O75093 1534 aa16.17■□□□□ 0.18
NUP54-201ENST00000264883 DLC1Q96QB1 1528 aa16.17■□□□□ 0.18
NUP54-201ENST00000264883 CD2BP2O95400 341 aaKnown RBP16.16■□□□□ 0.18
NUP54-201ENST00000264883 HDGFP51858 240 aaKnown RBP16.16■□□□□ 0.18
NUP54-201ENST00000264883 LETM1O95202 739 aaPredicted RBP16.16■□□□□ 0.18
NUP54-201ENST00000264883 TRIM27P14373 513 aa16.16■□□□□ 0.18
NUP54-201ENST00000264883 ZNF428Q96B54 188 aa16.16■□□□□ 0.18
NUP54-201ENST00000264883 KIF2CQ99661 725 aa16.16■□□□□ 0.18
NUP54-201ENST00000264883 SENP3Q9H4L4 574 aaPredicted RBP16.16■□□□□ 0.18
NUP54-201ENST00000264883 COL3A1P02461 1466 aaPredicted RBP16.15■□□□□ 0.18
NUP54-201ENST00000264883 PRIM1P49642 420 aaKnown RBP16.15■□□□□ 0.18
NUP54-201ENST00000264883 CBX1P83916 185 aa16.15■□□□□ 0.18
NUP54-201ENST00000264883 MCTP1Q6DN14 999 aa16.15■□□□□ 0.18
NUP54-201ENST00000264883 MYRIPQ8NFW9 859 aa16.15■□□□□ 0.18
NUP54-201ENST00000264883 GAS2L2Q8NHY3 880 aa16.15■□□□□ 0.18
NUP54-201ENST00000264883 ALDH1L2Q3SY69 923 aa16.14■□□□□ 0.17
NUP54-201ENST00000264883 ITPRIPQ8IWB1 547 aa16.14■□□□□ 0.17
NUP54-201ENST00000264883 PLEKHF1Q96S99 279 aa16.14■□□□□ 0.17
NUP54-201ENST00000264883 TMPOP42166 694 aaKnown RBP16.14■□□□□ 0.17
NUP54-201ENST00000264883 EXOSC9Q06265 439 aaKnown RBP16.14■□□□□ 0.17
NUP54-201ENST00000264883 STK26Q9P289 416 aa16.14■□□□□ 0.17
NUP54-201ENST00000264883 LTKP29376 864 aa16.13■□□□□ 0.17
NUP54-201ENST00000264883 NUCB1Q02818 461 aa16.13■□□□□ 0.17
NUP54-201ENST00000264883 ZBTB40Q9NUA8 1239 aa16.13■□□□□ 0.17
NUP54-201ENST00000264883 ADAMTS13Q76LX8 1427 aa16.12■□□□□ 0.17
NUP54-201ENST00000264883 METP08581 1390 aa16.12■□□□□ 0.17
NUP54-201ENST00000264883 PLEKHG1Q9ULL1 1385 aa16.12■□□□□ 0.17
NUP54-201ENST00000264883 BRPF1P55201 1214 aaPredicted RBP16.12■□□□□ 0.17
NUP54-201ENST00000264883 SSH1Q8WYL5 1049 aa16.12■□□□□ 0.17
NUP54-201ENST00000264883 LMBRD1Q9NUN5 540 aa16.12■□□□□ 0.17
NUP54-201ENST00000264883 KIAA2012Q0VF49 1180 aa16.12■□□□□ 0.17
NUP54-201ENST00000264883 BCL11BQ9C0K0 894 aaPredicted RBP16.12■□□□□ 0.17
NUP54-201ENST00000264883 CDC42BPGQ6DT37 1551 aa16.11■□□□□ 0.17
NUP54-201ENST00000264883 KNDC1Q76NI1 1749 aa16.11■□□□□ 0.17
NUP54-201ENST00000264883 DNTTIP2Q5QJE6 756 aaKnown RBP16.11■□□□□ 0.17
NUP54-201ENST00000264883 ZNF710Q8N1W2 664 aa16.11■□□□□ 0.17
NUP54-201ENST00000264883 TECPR2O15040 1411 aa16.11■□□□□ 0.17
NUP54-201ENST00000264883 AK9Q5TCS8 1911 aa16.11■□□□□ 0.17
NUP54-201ENST00000264883 CEP170BQ9Y4F5 1589 aaPredicted RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms