RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 ABCC2Q92887 1545 aa20.2■□□□□ 0.82
PHRF1-201ENST00000264555 AMOTL2Q9Y2J4 779 aa20.2■□□□□ 0.82
PHRF1-201ENST00000264555 BECN2A8MW95 431 aa20.2■□□□□ 0.82
PHRF1-201ENST00000264555 IL16Q14005 1332 aa20.2■□□□□ 0.82
PHRF1-201ENST00000264555 ABCC10Q5T3U5 1492 aa20.2■□□□□ 0.82
PHRF1-201ENST00000264555 TRIM29Q14134 588 aa20.19■□□□□ 0.82
PHRF1-201ENST00000264555 DCTN1Q14203 1278 aa20.19■□□□□ 0.82
PHRF1-201ENST00000264555 MRE11P49959 708 aa20.19■□□□□ 0.82
PHRF1-201ENST00000264555 BTBD11A6QL63 1104 aa20.19■□□□□ 0.82
PHRF1-201ENST00000264555 PUS7Q96PZ0 661 aaKnown RBP20.19■□□□□ 0.82
PHRF1-201ENST00000264555 K7ELQ4 463 aaPredicted RBP20.18■□□□□ 0.82
PHRF1-201ENST00000264555 BICD2Q8TD16 824 aa20.17■□□□□ 0.82
PHRF1-201ENST00000264555 CWC22Q9HCG8 908 aaKnown RBP20.17■□□□□ 0.82
PHRF1-201ENST00000264555 TRIM27P14373 513 aa20.17■□□□□ 0.82
PHRF1-201ENST00000264555 CABP4P57796 275 aa20.17■□□□□ 0.82
PHRF1-201ENST00000264555 WASHC4Q2M389 1173 aa20.16■□□□□ 0.82
PHRF1-201ENST00000264555 MIS18AQ9NYP9 233 aa20.16■□□□□ 0.82
PHRF1-201ENST00000264555 TEX14Q8IWB6 1497 aa20.16■□□□□ 0.82
PHRF1-201ENST00000264555 VPS37DQ86XT2 251 aa20.16■□□□□ 0.82
PHRF1-201ENST00000264555 RSPH6AQ9H0K4 717 aa20.15■□□□□ 0.82
PHRF1-201ENST00000264555 SRGAP3O43295 1099 aa20.15■□□□□ 0.82
PHRF1-201ENST00000264555 POLR3AO14802 1390 aaPredicted RBP20.15■□□□□ 0.82
PHRF1-201ENST00000264555 RALYLQ86SE5 291 aaKnown RBP20.15■□□□□ 0.82
PHRF1-201ENST00000264555 TTC21BQ7Z4L5 1316 aa20.15■□□□□ 0.82
PHRF1-201ENST00000264555 SKAP1Q86WV1 359 aa20.14■□□□□ 0.82
PHRF1-201ENST00000264555 PER1O15534 1290 aaPredicted RBP20.14■□□□□ 0.81
PHRF1-201ENST00000264555 FYB1O15117 783 aa20.14■□□□□ 0.81
PHRF1-201ENST00000264555 MAGI3Q5TCQ9 1506 aa20.14■□□□□ 0.81
PHRF1-201ENST00000264555 TAF7Q15545 349 aaPredicted RBP20.13■□□□□ 0.81
PHRF1-201ENST00000264555 MBD3O95983 291 aa20.13■□□□□ 0.81
PHRF1-201ENST00000264555 KIF6Q6ZMV9 814 aa20.13■□□□□ 0.81
PHRF1-201ENST00000264555 AMOTL1Q8IY63 956 aa20.13■□□□□ 0.81
PHRF1-201ENST00000264555 DNAJC2Q99543 621 aaKnown RBP20.13■□□□□ 0.81
PHRF1-201ENST00000264555 CCDC27Q2M243 656 aa20.13■□□□□ 0.81
PHRF1-201ENST00000264555 NFXL1Q6ZNB6 911 aa20.12■□□□□ 0.81
PHRF1-201ENST00000264555 NOL10Q9BSC4 688 aaKnown RBP20.12■□□□□ 0.81
PHRF1-201ENST00000264555 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.12■□□□□ 0.81
PHRF1-201ENST00000264555 TOM1L2Q6ZVM7 507 aa20.12■□□□□ 0.81
PHRF1-201ENST00000264555 CIZ1Q9ULV3 898 aaPredicted RBP20.12■□□□□ 0.81
PHRF1-201ENST00000264555 PHF8Q9UPP1 1060 aa20.12■□□□□ 0.81
PHRF1-201ENST00000264555 PIK3C2GO75747 1445 aa20.12■□□□□ 0.81
PHRF1-201ENST00000264555 TARBP1Q13395 1621 aaKnown RBP20.11■□□□□ 0.81
PHRF1-201ENST00000264555 COL17A1Q9UMD9 1497 aaPredicted RBP20.11■□□□□ 0.81
PHRF1-201ENST00000264555 ERICH2A1L162 156 aa20.11■□□□□ 0.81
PHRF1-201ENST00000264555 CEBPAP49715 358 aaPredicted RBP20.11■□□□□ 0.81
PHRF1-201ENST00000264555 XPCQ01831 940 aaPredicted RBP20.11■□□□□ 0.81
PHRF1-201ENST00000264555 STRN4Q9NRL3 753 aa20.11■□□□□ 0.81
PHRF1-201ENST00000264555 TNRQ92752 1358 aa20.11■□□□□ 0.81
PHRF1-201ENST00000264555 PDCP20941 246 aa20.1■□□□□ 0.81
PHRF1-201ENST00000264555 MSH5O43196 834 aa20.1■□□□□ 0.81
PHRF1-201ENST00000264555 MYL6BP14649 208 aa20.1■□□□□ 0.81
PHRF1-201ENST00000264555 AMOTQ4VCS5 1084 aa20.09■□□□□ 0.81
PHRF1-201ENST00000264555 NASPP49321 788 aaPredicted RBP20.09■□□□□ 0.81
PHRF1-201ENST00000264555 RBM42Q9BTD8 480 aaKnown RBP20.09■□□□□ 0.81
PHRF1-201ENST00000264555 PTPRCP08575 1304 aa20.09■□□□□ 0.81
PHRF1-201ENST00000264555 ACEP12821 1306 aa20.09■□□□□ 0.81
PHRF1-201ENST00000264555 CEP170Q5SW79 1584 aa20.09■□□□□ 0.81
PHRF1-201ENST00000264555 SASS6Q6UVJ0 657 aa20.09■□□□□ 0.81
PHRF1-201ENST00000264555 PRPF40AO75400 957 aaKnown RBP20.08■□□□□ 0.81
PHRF1-201ENST00000264555 CCDC73Q6ZRK6 1079 aa20.08■□□□□ 0.81
PHRF1-201ENST00000264555 CYP46A1Q9Y6A2 500 aa20.08■□□□□ 0.81
PHRF1-201ENST00000264555 GCC2Q8IWJ2 1684 aa20.08■□□□□ 0.8
PHRF1-201ENST00000264555 CAVIN1Q6NZI2 390 aaKnown RBP20.08■□□□□ 0.8
PHRF1-201ENST00000264555 SIL1Q9H173 461 aa20.08■□□□□ 0.8
PHRF1-201ENST00000264555 EXOC6BQ9Y2D4 811 aa20.08■□□□□ 0.8
PHRF1-201ENST00000264555 ZC3H6P61129 1189 aaKnown RBP20.08■□□□□ 0.8
PHRF1-201ENST00000264555 CREBRFQ8IUR6 639 aa20.08■□□□□ 0.8
PHRF1-201ENST00000264555 IL1RAPL2Q9NP60 686 aa20.08■□□□□ 0.8
PHRF1-201ENST00000264555 MAST1Q9Y2H9 1570 aa20.07■□□□□ 0.8
PHRF1-201ENST00000264555 MBIPQ9NS73 344 aa20.07■□□□□ 0.8
PHRF1-201ENST00000264555 IGHDP01880 384 aa20.07■□□□□ 0.8
PHRF1-201ENST00000264555 PRDM11Q9NQV5 511 aa20.07■□□□□ 0.8
PHRF1-201ENST00000264555 TBC1D2BQ9UPU7 963 aa20.07■□□□□ 0.8
PHRF1-201ENST00000264555 UHRF1BP1LA0JNW5 1464 aa20.07■□□□□ 0.8
PHRF1-201ENST00000264555 CARD14Q9BXL6 1004 aa20.07■□□□□ 0.8
PHRF1-201ENST00000264555 AACSQ86V21 672 aa20.07■□□□□ 0.8
PHRF1-201ENST00000264555 MARCH6O60337 910 aa20.06■□□□□ 0.8
PHRF1-201ENST00000264555 LETM1O95202 739 aaPredicted RBP20.06■□□□□ 0.8
PHRF1-201ENST00000264555 RAB11FIP3O75154 756 aa20.06■□□□□ 0.8
PHRF1-201ENST00000264555 TPD52L1Q16890 204 aaPredicted RBP20.06■□□□□ 0.8
PHRF1-201ENST00000264555 CCDC158Q5M9N0 1113 aa20.06■□□□□ 0.8
PHRF1-201ENST00000264555 DDX54Q8TDD1 881 aaKnown RBP20.06■□□□□ 0.8
PHRF1-201ENST00000264555 MAP4K4O95819 1239 aaPredicted RBP20.05■□□□□ 0.8
PHRF1-201ENST00000264555 HOOK1Q9UJC3 728 aaKnown RBP20.05■□□□□ 0.8
PHRF1-201ENST00000264555 SAFBQ15424 915 aaKnown RBP eCLIP20.05■□□□□ 0.8
PHRF1-201ENST00000264555 ARHGAP45Q92619 1136 aa20.05■□□□□ 0.8
PHRF1-201ENST00000264555 ANKRD1Q15327 319 aa20.05■□□□□ 0.8
PHRF1-201ENST00000264555 KIF1BPQ96EK5 621 aa20.05■□□□□ 0.8
PHRF1-201ENST00000264555 RIMS2Q9UQ26 1411 aa20.05■□□□□ 0.8
PHRF1-201ENST00000264555 MX1P20591 662 aa20.04■□□□□ 0.8
PHRF1-201ENST00000264555 MCM4P33991 863 aa20.04■□□□□ 0.8
PHRF1-201ENST00000264555 FOSBP53539 338 aa20.03■□□□□ 0.8
PHRF1-201ENST00000264555 USHBP1Q8N6Y0 703 aa20.03■□□□□ 0.8
PHRF1-201ENST00000264555 WDR33Q9C0J8 1336 aaKnown RBP20.03■□□□□ 0.8
PHRF1-201ENST00000264555 NPC1L1Q9UHC9 1359 aa20.03■□□□□ 0.8
PHRF1-201ENST00000264555 PPIP5K1Q6PFW1 1433 aa20.02■□□□□ 0.8
PHRF1-201ENST00000264555 CLSTN1O94985 981 aa20.02■□□□□ 0.8
PHRF1-201ENST00000264555 TTC39AQ5SRH9 613 aa20.02■□□□□ 0.8
PHRF1-201ENST00000264555 HDAC1Q13547 482 aaPredicted RBP20.02■□□□□ 0.8
PHRF1-201ENST00000264555 F6X3S4 739 aa20.02■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms