RNA–Protein interactions for RNA: ENST00000263741.11

SDF4-201, Transcript of stromal cell derived factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDF4, Length 2,079 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-201ENST00000263741 AXIN2Q9Y2T1 843 aa25.04■■□□□ 1.6
SDF4-201ENST00000263741 AATKQ6ZMQ8 1374 aa25.04■■□□□ 1.6
SDF4-201ENST00000263741 COL5A2P05997 1499 aaPredicted RBP25.03■■□□□ 1.6
SDF4-201ENST00000263741 RGPD2P0DJD1 1756 aa25.02■■□□□ 1.6
SDF4-201ENST00000263741 STRN4Q9NRL3 753 aa25.02■■□□□ 1.6
SDF4-201ENST00000263741 POTEAQ6S8J7 498 aa25.01■■□□□ 1.59
SDF4-201ENST00000263741 EMILIN1Q9Y6C2 1016 aa25.01■■□□□ 1.59
SDF4-201ENST00000263741 UNC5CLQ8IV45 518 aa25.01■■□□□ 1.59
SDF4-201ENST00000263741 ABCC6O95255 1503 aa25.01■■□□□ 1.59
SDF4-201ENST00000263741 ZNF772Q68DY9 489 aaPredicted RBP25■■□□□ 1.59
SDF4-201ENST00000263741 NPC1L1Q9UHC9 1359 aa24.99■■□□□ 1.59
SDF4-201ENST00000263741 ATRNO75882 1429 aa24.99■■□□□ 1.59
SDF4-201ENST00000263741 GLI3P10071 1580 aa24.99■■□□□ 1.59
SDF4-201ENST00000263741 PPM1GO15355 546 aaPredicted RBP24.98■■□□□ 1.59
SDF4-201ENST00000263741 AMPHP49418 695 aa24.98■■□□□ 1.59
SDF4-201ENST00000263741 QTRT2Q9H974 415 aaKnown RBP24.97■■□□□ 1.59
SDF4-201ENST00000263741 HOXC9P31274 260 aa24.96■■□□□ 1.59
SDF4-201ENST00000263741 CCDC9Q9Y3X0 531 aaKnown RBP24.96■■□□□ 1.59
SDF4-201ENST00000263741 POLKQ9UBT6 870 aa24.95■■□□□ 1.59
SDF4-201ENST00000263741 LARP1Q6PKG0 1096 aaKnown RBP24.95■■□□□ 1.58
SDF4-201ENST00000263741 LTV1Q96GA3 475 aaPredicted RBP24.95■■□□□ 1.58
SDF4-201ENST00000263741 EVA1CP58658 441 aa24.94■■□□□ 1.58
SDF4-201ENST00000263741 TRPC5Q9UL62 973 aaPredicted RBP24.94■■□□□ 1.58
SDF4-201ENST00000263741 RTL1A6NKG5 1358 aa24.94■■□□□ 1.58
SDF4-201ENST00000263741 IP6K1Q92551 441 aa24.93■■□□□ 1.58
SDF4-201ENST00000263741 BLMP54132 1417 aaPredicted RBP24.93■■□□□ 1.58
SDF4-201ENST00000263741 FAM208AQ9UK61 1670 aaKnown RBP24.93■■□□□ 1.58
SDF4-201ENST00000263741 FLT4P35916 1363 aa24.93■■□□□ 1.58
SDF4-201ENST00000263741 WNK3Q9BYP7 1800 aa24.92■■□□□ 1.58
SDF4-201ENST00000263741 HSP90AB2PQ58FF8 381 aa24.92■■□□□ 1.58
SDF4-201ENST00000263741 USP35Q9P2H5 1018 aa24.92■■□□□ 1.58
SDF4-201ENST00000263741 SMG6Q86US8 1419 aaKnown RBP24.92■■□□□ 1.58
SDF4-201ENST00000263741 ERBB3P21860 1342 aa24.91■■□□□ 1.58
SDF4-201ENST00000263741 VPS72Q15906 364 aa24.91■■□□□ 1.58
SDF4-201ENST00000263741 CSB-PGBD3P0DP91 1061 aa24.9■■□□□ 1.58
SDF4-201ENST00000263741 ANKRD24Q8TF21 1146 aa24.9■■□□□ 1.58
SDF4-201ENST00000263741 WDR17Q8IZU2 1322 aa24.89■■□□□ 1.58
SDF4-201ENST00000263741 CDK12Q9NYV4 1490 aaPredicted RBP24.89■■□□□ 1.57
SDF4-201ENST00000263741 GJD4Q96KN9 370 aaPredicted RBP24.89■■□□□ 1.57
SDF4-201ENST00000263741 CRB1P82279 1406 aa24.88■■□□□ 1.57
SDF4-201ENST00000263741 SPATA31A5Q5VU36 1347 aa24.88■■□□□ 1.57
SDF4-201ENST00000263741 SPATA31A7Q8IWB4 1347 aa24.88■■□□□ 1.57
SDF4-201ENST00000263741 PARD3Q8TEW0 1356 aa24.88■■□□□ 1.57
SDF4-201ENST00000263741 TOM1L2Q6ZVM7 507 aa24.87■■□□□ 1.57
SDF4-201ENST00000263741 BRWD3Q6RI45 1802 aa24.87■■□□□ 1.57
SDF4-201ENST00000263741 INSRP06213 1382 aa24.86■■□□□ 1.57
SDF4-201ENST00000263741 KIF24Q5T7B8 1368 aa24.86■■□□□ 1.57
SDF4-201ENST00000263741 SPATA31A1Q5TZJ5 1347 aa24.86■■□□□ 1.57
SDF4-201ENST00000263741 MTHFSP49914 203 aa24.85■■□□□ 1.57
SDF4-201ENST00000263741 RXRBP28702 533 aa24.85■■□□□ 1.57
SDF4-201ENST00000263741 RBM6P78332 1123 aaKnown RBP24.85■■□□□ 1.57
SDF4-201ENST00000263741 RGS12O14924 1447 aa24.84■■□□□ 1.57
SDF4-201ENST00000263741 NLRP2Q9NX02 1062 aa24.84■■□□□ 1.57
SDF4-201ENST00000263741 PPP2R1AP30153 589 aa24.83■■□□□ 1.57
SDF4-201ENST00000263741 FAM98CQ17RN3 349 aaKnown RBP24.83■■□□□ 1.57
SDF4-201ENST00000263741 THSD7AQ9UPZ6 1657 aa24.83■■□□□ 1.56
SDF4-201ENST00000263741 USHBP1Q8N6Y0 703 aa24.81■■□□□ 1.56
SDF4-201ENST00000263741 ILDR2Q71H61 639 aa24.8■■□□□ 1.56
SDF4-201ENST00000263741 COL3A1P02461 1466 aaPredicted RBP24.8■■□□□ 1.56
SDF4-201ENST00000263741 A0A0G2JS52 829 aa24.79■■□□□ 1.56
SDF4-201ENST00000263741 MYT1Q01538 1121 aa24.79■■□□□ 1.56
SDF4-201ENST00000263741 EIF4A2Q14240 407 aaKnown RBP24.79■■□□□ 1.56
SDF4-201ENST00000263741 RGPD1P0DJD0 1748 aa24.79■■□□□ 1.56
SDF4-201ENST00000263741 LRRC37A3O60309 1634 aa24.79■■□□□ 1.56
SDF4-201ENST00000263741 TCP11L2Q8N4U5 519 aa24.78■■□□□ 1.56
SDF4-201ENST00000263741 PARP4Q9UKK3 1724 aaKnown RBP24.78■■□□□ 1.56
SDF4-201ENST00000263741 NBPF6Q5VWK0 638 aa24.77■■□□□ 1.56
SDF4-201ENST00000263741 NBPF4Q96M43 638 aa24.77■■□□□ 1.56
SDF4-201ENST00000263741 CARD10Q9BWT7 1032 aa24.77■■□□□ 1.56
SDF4-201ENST00000263741 PRKRIP1Q9H875 184 aaPredicted RBP24.76■■□□□ 1.55
SDF4-201ENST00000263741 RALBP1Q15311 655 aa24.74■■□□□ 1.55
SDF4-201ENST00000263741 EP400Q96L91 3159 aa24.74■■□□□ 1.55
SDF4-201ENST00000263741 SEPT12Q8IYM1 358 aa24.73■■□□□ 1.55
SDF4-201ENST00000263741 DISP2A7MBM2 1401 aa24.73■■□□□ 1.55
SDF4-201ENST00000263741 EYA1Q99502 592 aa24.73■■□□□ 1.55
SDF4-201ENST00000263741 MEGF6O75095 1541 aa24.73■■□□□ 1.55
SDF4-201ENST00000263741 BARGINQ6ZT62 677 aa24.71■■□□□ 1.55
SDF4-201ENST00000263741 SHANK3Q9BYB0 1731 aa24.71■■□□□ 1.55
SDF4-201ENST00000263741 MYBBP1AQ9BQG0 1328 aaKnown RBP24.7■■□□□ 1.55
SDF4-201ENST00000263741 IL13P35225 146 aa24.7■■□□□ 1.54
SDF4-201ENST00000263741 THRAP3Q9Y2W1 955 aaKnown RBP24.7■■□□□ 1.54
SDF4-201ENST00000263741 ONECUT3O60422 494 aaPredicted RBP24.69■■□□□ 1.54
SDF4-201ENST00000263741 NCAPD2Q15021 1401 aa24.69■■□□□ 1.54
SDF4-201ENST00000263741 DIAPH1O60610 1272 aaKnown RBP24.68■■□□□ 1.54
SDF4-201ENST00000263741 IGSF1Q8N6C5 1336 aa24.67■■□□□ 1.54
SDF4-201ENST00000263741 AEBP1Q8IUX7 1158 aa24.67■■□□□ 1.54
SDF4-201ENST00000263741 CFAP53Q96M91 514 aa24.66■■□□□ 1.54
SDF4-201ENST00000263741 IL2RBP14784 551 aa24.66■■□□□ 1.54
SDF4-201ENST00000263741 ANP32CO43423 234 aa24.65■■□□□ 1.54
SDF4-201ENST00000263741 FAM182BQ5T319 152 aa24.65■■□□□ 1.54
SDF4-201ENST00000263741 PKD1L3Q7Z443 1732 aa24.65■■□□□ 1.54
SDF4-201ENST00000263741 U2SURPO15042 1029 aaKnown RBP24.64■■□□□ 1.53
SDF4-201ENST00000263741 TNS2Q63HR2 1409 aa24.64■■□□□ 1.53
SDF4-201ENST00000263741 HMOX1P09601 288 aa24.63■■□□□ 1.53
SDF4-201ENST00000263741 OVOS2A0A0G2JMS6 1433 aa24.62■■□□□ 1.53
SDF4-201ENST00000263741 SULT6B1Q6IMI4 303 aa24.62■■□□□ 1.53
SDF4-201ENST00000263741 DDB1Q16531 1140 aa24.61■■□□□ 1.53
SDF4-201ENST00000263741 RAPGEF4Q8WZA2 1011 aa24.61■■□□□ 1.53
SDF4-201ENST00000263741 KAT6BQ8WYB5 2073 aa24.6■■□□□ 1.53
SDF4-201ENST00000263741 KRT27Q7Z3Y8 459 aa24.6■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms