RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 SSX2IPQ9Y2D8 614 aa16.35■□□□□ 0.21
CCDC88A-201ENST00000263630 ME1P48163 572 aa16.35■□□□□ 0.21
CCDC88A-201ENST00000263630 DDX46Q7L014 1031 aaKnown RBP16.35■□□□□ 0.21
CCDC88A-201ENST00000263630 KLHL34Q8N239 644 aa16.34■□□□□ 0.21
CCDC88A-201ENST00000263630 UBTFL1P0CB47 393 aaPredicted RBP16.34■□□□□ 0.21
CCDC88A-201ENST00000263630 EIF5P55010 431 aaKnown RBP16.34■□□□□ 0.21
CCDC88A-201ENST00000263630 NACAP1Q9BZK3 213 aa16.34■□□□□ 0.21
CCDC88A-201ENST00000263630 CCDC69A6NI79 296 aa16.34■□□□□ 0.21
CCDC88A-201ENST00000263630 KIF6Q6ZMV9 814 aa16.34■□□□□ 0.21
CCDC88A-201ENST00000263630 ATP2B1P20020 1258 aa16.34■□□□□ 0.21
CCDC88A-201ENST00000263630 MPHOSPH9Q99550 1183 aa16.33■□□□□ 0.21
CCDC88A-201ENST00000263630 NFKBIBQ15653 356 aa16.33■□□□□ 0.21
CCDC88A-201ENST00000263630 FMN1Q68DA7 1419 aa16.33■□□□□ 0.21
CCDC88A-201ENST00000263630 PPP4R3AQ6IN85 833 aa16.33■□□□□ 0.21
CCDC88A-201ENST00000263630 GOPCQ9HD26 462 aa16.33■□□□□ 0.2
CCDC88A-201ENST00000263630 KRT85P78386 507 aa16.33■□□□□ 0.2
CCDC88A-201ENST00000263630 CEP131Q9UPN4 1083 aa16.33■□□□□ 0.2
CCDC88A-201ENST00000263630 ZSCAN12O43309 604 aa16.32■□□□□ 0.2
CCDC88A-201ENST00000263630 TNIP1Q15025 636 aa16.32■□□□□ 0.2
CCDC88A-201ENST00000263630 HMGB1P1B2RPK0 211 aaPredicted RBP16.32■□□□□ 0.2
CCDC88A-201ENST00000263630 FGFR1OPO95684 399 aaKnown RBP16.32■□□□□ 0.2
CCDC88A-201ENST00000263630 FAM114A1Q8IWE2 563 aa16.32■□□□□ 0.2
CCDC88A-201ENST00000263630 RAB3IL1Q8TBN0 382 aa16.32■□□□□ 0.2
CCDC88A-201ENST00000263630 CASQ1P31415 396 aa16.32■□□□□ 0.2
CCDC88A-201ENST00000263630 BBXQ8WY36 941 aaPredicted RBP16.32■□□□□ 0.2
CCDC88A-201ENST00000263630 KIF5CO60282 957 aa16.32■□□□□ 0.2
CCDC88A-201ENST00000263630 WDR33Q9C0J8 1336 aaKnown RBP16.32■□□□□ 0.2
CCDC88A-201ENST00000263630 NAA15Q9BXJ9 866 aaKnown RBP16.31■□□□□ 0.2
CCDC88A-201ENST00000263630 FSD2A1L4K1 749 aa16.31■□□□□ 0.2
CCDC88A-201ENST00000263630 ATP2B2Q01814 1243 aa16.31■□□□□ 0.2
CCDC88A-201ENST00000263630 LARP1Q6PKG0 1096 aaKnown RBP16.31■□□□□ 0.2
CCDC88A-201ENST00000263630 NAP1L3Q99457 506 aaPredicted RBP16.31■□□□□ 0.2
CCDC88A-201ENST00000263630 LRRC45Q96CN5 670 aa16.31■□□□□ 0.2
CCDC88A-201ENST00000263630 GNAI1P63096 354 aa16.31■□□□□ 0.2
CCDC88A-201ENST00000263630 CCDC83Q8IWF9 413 aa16.31■□□□□ 0.2
CCDC88A-201ENST00000263630 FIBPO43427 364 aa16.3■□□□□ 0.2
CCDC88A-201ENST00000263630 PUS7Q96PZ0 661 aaKnown RBP16.3■□□□□ 0.2
CCDC88A-201ENST00000263630 PRPF40AO75400 957 aaKnown RBP16.3■□□□□ 0.2
CCDC88A-201ENST00000263630 WASHC2CQ9Y4E1 1318 aa16.3■□□□□ 0.2
CCDC88A-201ENST00000263630 GTPBP4Q9BZE4 634 aaKnown RBP16.3■□□□□ 0.2
CCDC88A-201ENST00000263630 NOL3O60936 208 aaKnown RBP16.3■□□□□ 0.2
CCDC88A-201ENST00000263630 RNF187Q5TA31 235 aaPredicted RBP16.3■□□□□ 0.2
CCDC88A-201ENST00000263630 POTEB2H3BUK9 544 aa16.3■□□□□ 0.2
CCDC88A-201ENST00000263630 GPATCH11Q8N954 259 aa16.3■□□□□ 0.2
CCDC88A-201ENST00000263630 NECTIN2Q92692 538 aa16.3■□□□□ 0.2
CCDC88A-201ENST00000263630 TSPYL4Q9UJ04 414 aa16.3■□□□□ 0.2
CCDC88A-201ENST00000263630 CCDC158Q5M9N0 1113 aa16.29■□□□□ 0.2
CCDC88A-201ENST00000263630 ZSCAN25Q6NSZ9 544 aa16.29■□□□□ 0.2
CCDC88A-201ENST00000263630 WASF1Q92558 559 aa16.29■□□□□ 0.2
CCDC88A-201ENST00000263630 PLIN1O60240 522 aa16.29■□□□□ 0.2
CCDC88A-201ENST00000263630 CEBPZQ03701 1054 aaKnown RBP16.29■□□□□ 0.2
CCDC88A-201ENST00000263630 ZNF76P36508 570 aa16.29■□□□□ 0.2
CCDC88A-201ENST00000263630 DIAPH1O60610 1272 aaKnown RBP16.29■□□□□ 0.2
CCDC88A-201ENST00000263630 PSME1Q06323 249 aa16.28■□□□□ 0.2
CCDC88A-201ENST00000263630 CTNNA2P26232 953 aa16.28■□□□□ 0.2
CCDC88A-201ENST00000263630 RIPK4P57078 832 aa16.28■□□□□ 0.2
CCDC88A-201ENST00000263630 FKBP15Q5T1M5 1219 aa16.28■□□□□ 0.2
CCDC88A-201ENST00000263630 EFCAB2Q5VUJ9 269 aa16.28■□□□□ 0.2
CCDC88A-201ENST00000263630 CCDC178Q5BJE1 867 aa16.28■□□□□ 0.2
CCDC88A-201ENST00000263630 TTC39AQ5SRH9 613 aa16.28■□□□□ 0.2
CCDC88A-201ENST00000263630 WDR66Q8TBY9 1149 aa16.28■□□□□ 0.2
CCDC88A-201ENST00000263630 LNPKQ9C0E8 428 aa16.28■□□□□ 0.2
CCDC88A-201ENST00000263630 TMEM87AQ8NBN3 555 aa16.28■□□□□ 0.2
CCDC88A-201ENST00000263630 DRC1Q96MC2 740 aa16.28■□□□□ 0.2
CCDC88A-201ENST00000263630 UPF3BQ9BZI7 483 aaKnown RBP16.28■□□□□ 0.2
CCDC88A-201ENST00000263630 CYP46A1Q9Y6A2 500 aa16.28■□□□□ 0.2
CCDC88A-201ENST00000263630 TSG101Q99816 390 aa16.28■□□□□ 0.2
CCDC88A-201ENST00000263630 RB1CC1Q8TDY2 1594 aa16.27■□□□□ 0.2
CCDC88A-201ENST00000263630 SLU7O95391 586 aaKnown RBP16.27■□□□□ 0.2
CCDC88A-201ENST00000263630 CCDC6Q16204 474 aa16.27■□□□□ 0.2
CCDC88A-201ENST00000263630 CCDC144AA2RUR9 1427 aa16.27■□□□□ 0.19
CCDC88A-201ENST00000263630 PAFAH1B1P43034 410 aa16.27■□□□□ 0.19
CCDC88A-201ENST00000263630 KIF18AQ8NI77 898 aa16.27■□□□□ 0.19
CCDC88A-201ENST00000263630 IKBKGQ9Y6K9 419 aa16.27■□□□□ 0.19
CCDC88A-201ENST00000263630 KIF3CO14782 793 aa16.27■□□□□ 0.19
CCDC88A-201ENST00000263630 SPECC1Q5M775 1068 aa16.27■□□□□ 0.19
CCDC88A-201ENST00000263630 MIA2Q96PC5 1412 aa16.26■□□□□ 0.19
CCDC88A-201ENST00000263630 CGNQ9P2M7 1197 aaKnown RBP16.26■□□□□ 0.19
CCDC88A-201ENST00000263630 NEK4P51957 841 aa16.26■□□□□ 0.19
CCDC88A-201ENST00000263630 EXOC6Q8TAG9 804 aa16.26■□□□□ 0.19
CCDC88A-201ENST00000263630 PIBF1Q8WXW3 757 aa16.26■□□□□ 0.19
CCDC88A-201ENST00000263630 RAPGEF4Q8WZA2 1011 aa16.26■□□□□ 0.19
CCDC88A-201ENST00000263630 FILIP1Q7Z7B0 1213 aa16.25■□□□□ 0.19
CCDC88A-201ENST00000263630 USO1O60763 962 aaKnown RBP16.25■□□□□ 0.19
CCDC88A-201ENST00000263630 KDM4AO75164 1064 aa16.25■□□□□ 0.19
CCDC88A-201ENST00000263630 SPDYE4A6NLX3 237 aa16.25■□□□□ 0.19
CCDC88A-201ENST00000263630 GNAI3P08754 354 aa16.25■□□□□ 0.19
CCDC88A-201ENST00000263630 FOXD1Q16676 465 aa16.25■□□□□ 0.19
CCDC88A-201ENST00000263630 PPP1R14CQ8TAE6 165 aa16.25■□□□□ 0.19
CCDC88A-201ENST00000263630 CTNNBL1Q8WYA6 563 aaPredicted RBP16.25■□□□□ 0.19
CCDC88A-201ENST00000263630 NUTM2FA1L443 756 aa16.24■□□□□ 0.19
CCDC88A-201ENST00000263630 FERMT2Q96AC1 680 aa16.24■□□□□ 0.19
CCDC88A-201ENST00000263630 RUNDC1Q96C34 613 aa16.24■□□□□ 0.19
CCDC88A-201ENST00000263630 PANK3Q9H999 370 aa16.24■□□□□ 0.19
CCDC88A-201ENST00000263630 CACNA2D4Q7Z3S7 1137 aa16.24■□□□□ 0.19
CCDC88A-201ENST00000263630 FBF1Q8TES7 1133 aa16.24■□□□□ 0.19
CCDC88A-201ENST00000263630 RRBP1Q9P2E9 1410 aaKnown RBP16.24■□□□□ 0.19
CCDC88A-201ENST00000263630 CCDC18Q5T9S5 1454 aa16.24■□□□□ 0.19
CCDC88A-201ENST00000263630 SSBP05455 408 aaKnown RBP eCLIP16.24■□□□□ 0.19
CCDC88A-201ENST00000263630 PTPN14Q15678 1187 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms