RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 MRPL50Q8N5N7 158 aaKnown RBP11.41□□□□□ -0.58
MSH4-201ENST00000263187 OTUD7AQ8TE49 926 aaPredicted RBP11.41□□□□□ -0.58
MSH4-201ENST00000263187 SLC52A1Q9NWF4 448 aa11.41□□□□□ -0.58
MSH4-201ENST00000263187 YTHDC2Q9H6S0 1430 aaKnown RBP11.41□□□□□ -0.58
MSH4-201ENST00000263187 NFE2L2Q16236 605 aa11.41□□□□□ -0.58
MSH4-201ENST00000263187 L1TD1Q5T7N2 865 aaKnown RBP11.41□□□□□ -0.58
MSH4-201ENST00000263187 PPP6R1Q9UPN7 881 aa11.41□□□□□ -0.58
MSH4-201ENST00000263187 PREX1Q8TCU6 1659 aa11.41□□□□□ -0.58
MSH4-201ENST00000263187 FAM43AQ8N2R8 423 aa11.4□□□□□ -0.58
MSH4-201ENST00000263187 MCM10Q7L590 875 aa11.4□□□□□ -0.58
MSH4-201ENST00000263187 ARHGAP31Q2M1Z3 1444 aa11.4□□□□□ -0.58
MSH4-201ENST00000263187 PPIP5K1Q6PFW1 1433 aa11.39□□□□□ -0.59
MSH4-201ENST00000263187 NEXMIFQ5QGS0 1516 aa11.39□□□□□ -0.59
MSH4-201ENST00000263187 CD163L1Q9NR16 1453 aa11.39□□□□□ -0.59
MSH4-201ENST00000263187 FOXD4L5Q5VV16 416 aaPredicted RBP11.39□□□□□ -0.59
MSH4-201ENST00000263187 FOXD4L4Q8WXT5 416 aaPredicted RBP11.39□□□□□ -0.59
MSH4-201ENST00000263187 PNNQ9H307 717 aaKnown RBP11.39□□□□□ -0.59
MSH4-201ENST00000263187 VIRMAQ69YN4 1812 aaKnown RBP11.39□□□□□ -0.59
MSH4-201ENST00000263187 SPATA31D1Q6ZQQ2 1576 aa11.38□□□□□ -0.59
MSH4-201ENST00000263187 PIK3C2BO00750 1634 aa11.38□□□□□ -0.59
MSH4-201ENST00000263187 ARHGEF28Q8N1W1 1705 aaKnown RBP11.38□□□□□ -0.59
MSH4-201ENST00000263187 NCLP19338 710 aaKnown RBP11.38□□□□□ -0.59
MSH4-201ENST00000263187 SSFA2P28290 1259 aa11.38□□□□□ -0.59
MSH4-201ENST00000263187 ZNF692Q9BU19 519 aaPredicted RBP11.38□□□□□ -0.59
MSH4-201ENST00000263187 IL16Q14005 1332 aa11.38□□□□□ -0.59
MSH4-201ENST00000263187 ALDH1L2Q3SY69 923 aa11.38□□□□□ -0.59
MSH4-201ENST00000263187 NECTIN2Q92692 538 aa11.38□□□□□ -0.59
MSH4-201ENST00000263187 CHAMP1Q96JM3 812 aa11.38□□□□□ -0.59
MSH4-201ENST00000263187 NAP1L5Q96NT1 182 aaPredicted RBP11.38□□□□□ -0.59
MSH4-201ENST00000263187 KIF2CQ99661 725 aa11.38□□□□□ -0.59
MSH4-201ENST00000263187 COL3A1P02461 1466 aaPredicted RBP11.37□□□□□ -0.59
MSH4-201ENST00000263187 SULT6B1Q6IMI4 303 aa11.37□□□□□ -0.59
MSH4-201ENST00000263187 SLC4A10Q6U841 1118 aa11.37□□□□□ -0.59
MSH4-201ENST00000263187 GAS2L2Q8NHY3 880 aa11.37□□□□□ -0.59
MSH4-201ENST00000263187 GNAI1P63096 354 aa11.37□□□□□ -0.59
MSH4-201ENST00000263187 TSHZ3Q63HK5 1081 aa11.37□□□□□ -0.59
MSH4-201ENST00000263187 GAS2L3Q86XJ1 694 aa11.37□□□□□ -0.59
MSH4-201ENST00000263187 NEURL4Q96JN8 1562 aa11.36□□□□□ -0.59
MSH4-201ENST00000263187 PTPRMP28827 1452 aa11.36□□□□□ -0.59
MSH4-201ENST00000263187 IL13P35225 146 aa11.36□□□□□ -0.59
MSH4-201ENST00000263187 COG3Q96JB2 828 aa11.36□□□□□ -0.59
MSH4-201ENST00000263187 PUS7Q96PZ0 661 aaKnown RBP11.36□□□□□ -0.59
MSH4-201ENST00000263187 PLEKHG5O94827 1062 aa11.36□□□□□ -0.59
MSH4-201ENST00000263187 GSPT1P15170 499 aaKnown RBP11.36□□□□□ -0.59
MSH4-201ENST00000263187 TPRNQ4KMQ1 711 aa11.36□□□□□ -0.59
MSH4-201ENST00000263187 BMP2KLQ5H9B9 411 aa11.36□□□□□ -0.59
MSH4-201ENST00000263187 ZNF142P52746 1687 aaPredicted RBP11.36□□□□□ -0.59
MSH4-201ENST00000263187 LRRC7Q96NW7 1537 aa11.35□□□□□ -0.59
MSH4-201ENST00000263187 RBM25P49756 843 aaKnown RBP11.35□□□□□ -0.59
MSH4-201ENST00000263187 NUDT16Q96DE0 195 aaKnown RBP11.35□□□□□ -0.59
MSH4-201ENST00000263187 ADGRB2O60241 1585 aa11.35□□□□□ -0.59
MSH4-201ENST00000263187 NOL8Q76FK4 1167 aaKnown RBP11.35□□□□□ -0.59
MSH4-201ENST00000263187 GRPEL1Q9HAV7 217 aa11.35□□□□□ -0.59
MSH4-201ENST00000263187 F6X3S4 739 aa11.34□□□□□ -0.59
MSH4-201ENST00000263187 KDM4FA0A1W2PPD8 638 aa11.34□□□□□ -0.59
MSH4-201ENST00000263187 FOXO3O43524 673 aa11.34□□□□□ -0.59
MSH4-201ENST00000263187 PKP1Q13835 747 aa11.34□□□□□ -0.59
MSH4-201ENST00000263187 GCC1Q96CN9 775 aa11.34□□□□□ -0.59
MSH4-201ENST00000263187 MYO5BQ9ULV0 1848 aa11.34□□□□□ -0.59
MSH4-201ENST00000263187 FSD2A1L4K1 749 aa11.34□□□□□ -0.59
MSH4-201ENST00000263187 IFT57Q9NWB7 429 aa11.34□□□□□ -0.59
MSH4-201ENST00000263187 DDX11L8A8MPP1 907 aa11.33□□□□□ -0.6
MSH4-201ENST00000263187 PNPLA6Q8IY17 1366 aa11.33□□□□□ -0.6
MSH4-201ENST00000263187 K7ELQ4 463 aaPredicted RBP11.33□□□□□ -0.6
MSH4-201ENST00000263187 WASLO00401 505 aaPredicted RBP11.33□□□□□ -0.6
MSH4-201ENST00000263187 FOXD4L6Q3SYB3 417 aaPredicted RBP11.33□□□□□ -0.6
MSH4-201ENST00000263187 HSP90AB2PQ58FF8 381 aa11.33□□□□□ -0.6
MSH4-201ENST00000263187 FOXD4L3Q6VB84 417 aaPredicted RBP11.33□□□□□ -0.6
MSH4-201ENST00000263187 PLEKHM2Q8IWE5 1019 aa11.33□□□□□ -0.6
MSH4-201ENST00000263187 CFAP44Q96MT7 982 aa11.33□□□□□ -0.6
MSH4-201ENST00000263187 MEIS3Q99687 375 aa11.33□□□□□ -0.6
MSH4-201ENST00000263187 FAM135BQ49AJ0 1406 aa11.32□□□□□ -0.6
MSH4-201ENST00000263187 CDC45O75419 566 aa11.32□□□□□ -0.6
MSH4-201ENST00000263187 ZMYM3Q14202 1370 aa11.32□□□□□ -0.6
MSH4-201ENST00000263187 MCTP1Q6DN14 999 aa11.32□□□□□ -0.6
MSH4-201ENST00000263187 GBP4Q96PP9 640 aa11.32□□□□□ -0.6
MSH4-201ENST00000263187 SLC4A2P04920 1241 aa11.31□□□□□ -0.6
MSH4-201ENST00000263187 USP32Q8NFA0 1604 aa11.31□□□□□ -0.6
MSH4-201ENST00000263187 MRE11P49959 708 aa11.31□□□□□ -0.6
MSH4-201ENST00000263187 NUTM2GQ5VZR2 741 aa11.31□□□□□ -0.6
MSH4-201ENST00000263187 DDX49Q9Y6V7 483 aaKnown RBP11.31□□□□□ -0.6
MSH4-201ENST00000263187 METP08581 1390 aa11.31□□□□□ -0.6
MSH4-201ENST00000263187 CALD1Q05682 793 aaKnown RBP11.31□□□□□ -0.6
MSH4-201ENST00000263187 API5Q9BZZ5 524 aaKnown RBP11.31□□□□□ -0.6
MSH4-201ENST00000263187 ABCC4O15439 1325 aa11.3□□□□□ -0.6
MSH4-201ENST00000263187 ERBB4Q15303 1308 aa11.3□□□□□ -0.6
MSH4-201ENST00000263187 ZNF853P0CG23 659 aa11.3□□□□□ -0.6
MSH4-201ENST00000263187 EIF4A2Q14240 407 aaKnown RBP11.3□□□□□ -0.6
MSH4-201ENST00000263187 RAB3GAP1Q15042 981 aa11.3□□□□□ -0.6
MSH4-201ENST00000263187 NCBP3Q53F19 620 aaKnown RBP11.3□□□□□ -0.6
MSH4-201ENST00000263187 G2E3Q7L622 706 aa11.3□□□□□ -0.6
MSH4-201ENST00000263187 ZGPATQ8N5A5 531 aaKnown RBP11.3□□□□□ -0.6
MSH4-201ENST00000263187 SNX21Q969T3 373 aa11.3□□□□□ -0.6
MSH4-201ENST00000263187 DDIT3P35638 169 aa11.3□□□□□ -0.6
MSH4-201ENST00000263187 SDSP20132 328 aa11.29□□□□□ -0.6
MSH4-201ENST00000263187 TRIM44Q96DX7 344 aaPredicted RBP11.29□□□□□ -0.6
MSH4-201ENST00000263187 ESF1Q9H501 851 aaKnown RBP11.29□□□□□ -0.6
MSH4-201ENST00000263187 UBR1Q8IWV7 1749 aa11.29□□□□□ -0.6
MSH4-201ENST00000263187 ZBTB7CA1YPR0 619 aa11.29□□□□□ -0.6
MSH4-201ENST00000263187 DTNBO60941 627 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms