RNA–Protein interactions for RNA: ENST00000261438.9

KLF3-201, Transcript of Kruppel like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KLF3, Length 5,122 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLF3-201ENST00000261438 SERPINC1P01008 464 aa20.59■□□□□ 0.89
KLF3-201ENST00000261438 PRIM1P49642 420 aaKnown RBP20.59■□□□□ 0.89
KLF3-201ENST00000261438 CEP57L1Q8IYX8 460 aa20.59■□□□□ 0.89
KLF3-201ENST00000261438 CLASRPQ8N2M8 674 aaKnown RBP20.59■□□□□ 0.89
KLF3-201ENST00000261438 GDPD2Q9HCC8 539 aa20.59■□□□□ 0.89
KLF3-201ENST00000261438 DHX29Q7Z478 1369 aaKnown RBP20.59■□□□□ 0.89
KLF3-201ENST00000261438 RPAP2Q8IXW5 612 aaPredicted RBP20.58■□□□□ 0.89
KLF3-201ENST00000261438 USP8P40818 1118 aa20.58■□□□□ 0.88
KLF3-201ENST00000261438 CAGE1Q8TC20 777 aa20.58■□□□□ 0.88
KLF3-201ENST00000261438 NOL10Q9BSC4 688 aaKnown RBP20.58■□□□□ 0.88
KLF3-201ENST00000261438 UPF3BQ9BZI7 483 aaKnown RBP20.58■□□□□ 0.88
KLF3-201ENST00000261438 AKAP17AQ02040 695 aaKnown RBP20.58■□□□□ 0.88
KLF3-201ENST00000261438 KRT222Q8N1A0 295 aa20.57■□□□□ 0.88
KLF3-201ENST00000261438 POLR3GO15318 223 aaPredicted RBP20.57■□□□□ 0.88
KLF3-201ENST00000261438 ZSCAN31Q96LW9 406 aaPredicted RBP20.57■□□□□ 0.88
KLF3-201ENST00000261438 SMC5Q8IY18 1101 aa20.57■□□□□ 0.88
KLF3-201ENST00000261438 GAPVD1Q14C86 1478 aa20.57■□□□□ 0.88
KLF3-201ENST00000261438 SUPT6HQ7KZ85 1726 aaKnown RBP20.57■□□□□ 0.88
KLF3-201ENST00000261438 LRRFIP1Q32MZ4 808 aaKnown RBP20.56■□□□□ 0.88
KLF3-201ENST00000261438 CDR1P51861 262 aa20.56■□□□□ 0.88
KLF3-201ENST00000261438 CLIP2Q9UDT6 1046 aa20.56■□□□□ 0.88
KLF3-201ENST00000261438 TRIM27P14373 513 aa20.56■□□□□ 0.88
KLF3-201ENST00000261438 FSD1Q9BTV5 496 aa20.56■□□□□ 0.88
KLF3-201ENST00000261438 TERF1P54274 439 aa20.55■□□□□ 0.88
KLF3-201ENST00000261438 STK38Q15208 465 aa20.55■□□□□ 0.88
KLF3-201ENST00000261438 NOL7Q9UMY1 257 aaKnown RBP20.55■□□□□ 0.88
KLF3-201ENST00000261438 ZNF330Q9Y3S2 320 aaPredicted RBP20.55■□□□□ 0.88
KLF3-201ENST00000261438 PTPN23Q9H3S7 1636 aa20.55■□□□□ 0.88
KLF3-201ENST00000261438 ME1P48163 572 aa20.55■□□□□ 0.88
KLF3-201ENST00000261438 ANKRD1Q15327 319 aa20.55■□□□□ 0.88
KLF3-201ENST00000261438 TMEM132EQ6IEE7 984 aa20.55■□□□□ 0.88
KLF3-201ENST00000261438 GPRASP1Q5JY77 1395 aa20.55■□□□□ 0.88
KLF3-201ENST00000261438 MLECQ14165 292 aa20.55■□□□□ 0.88
KLF3-201ENST00000261438 HCLS1P14317 486 aaPredicted RBP20.54■□□□□ 0.88
KLF3-201ENST00000261438 TMPOP42166 694 aaKnown RBP20.54■□□□□ 0.88
KLF3-201ENST00000261438 SRCIN1Q9C0H9 1055 aa20.54■□□□□ 0.88
KLF3-201ENST00000261438 PDRG1Q9NUG6 133 aa20.54■□□□□ 0.88
KLF3-201ENST00000261438 PAXBP1Q9Y5B6 917 aa20.54■□□□□ 0.88
KLF3-201ENST00000261438 PLEKHH1Q9ULM0 1364 aa20.54■□□□□ 0.88
KLF3-201ENST00000261438 NGDNQ8NEJ9 315 aaKnown RBP20.54■□□□□ 0.88
KLF3-201ENST00000261438 DNAJC2Q99543 621 aaKnown RBP20.54■□□□□ 0.88
KLF3-201ENST00000261438 PPP6R1Q9UPN7 881 aa20.54■□□□□ 0.88
KLF3-201ENST00000261438 NUTM2FA1L443 756 aa20.54■□□□□ 0.88
KLF3-201ENST00000261438 STK3Q13188 491 aa20.54■□□□□ 0.88
KLF3-201ENST00000261438 IGSF3O75054 1194 aa20.54■□□□□ 0.88
KLF3-201ENST00000261438 POLA1P09884 1462 aaPredicted RBP20.53■□□□□ 0.88
KLF3-201ENST00000261438 KIAA0754O94854 1291 aa20.53■□□□□ 0.88
KLF3-201ENST00000261438 BMS1Q14692 1282 aaKnown RBP20.53■□□□□ 0.88
KLF3-201ENST00000261438 CCDC102AQ96A19 550 aa20.53■□□□□ 0.88
KLF3-201ENST00000261438 PCF11O94913 1555 aaKnown RBP20.53■□□□□ 0.88
KLF3-201ENST00000261438 PDIA4P13667 645 aaKnown RBP20.53■□□□□ 0.88
KLF3-201ENST00000261438 NEXNQ0ZGT2 675 aa20.53■□□□□ 0.88
KLF3-201ENST00000261438 TRDNQ13061 729 aa20.53■□□□□ 0.88
KLF3-201ENST00000261438 ERCC6Q03468 1493 aa20.53■□□□□ 0.88
KLF3-201ENST00000261438 TEFQ10587 303 aa20.53■□□□□ 0.88
KLF3-201ENST00000261438 TTC12Q9H892 705 aaPredicted RBP20.53■□□□□ 0.88
KLF3-201ENST00000261438 SLC4A2P04920 1241 aa20.52■□□□□ 0.88
KLF3-201ENST00000261438 HIP1O00291 1037 aa20.52■□□□□ 0.88
KLF3-201ENST00000261438 CFAP45Q9UL16 551 aa20.52■□□□□ 0.88
KLF3-201ENST00000261438 HSP90AB3PQ58FF7 597 aa20.52■□□□□ 0.88
KLF3-201ENST00000261438 TRMT1Q9NXH9 659 aaKnown RBP20.52■□□□□ 0.88
KLF3-201ENST00000261438 KIF20AO95235 890 aa20.52■□□□□ 0.87
KLF3-201ENST00000261438 SFPQP23246 707 aaKnown RBP eCLIP20.52■□□□□ 0.87
KLF3-201ENST00000261438 HDAC1Q13547 482 aaPredicted RBP20.52■□□□□ 0.87
KLF3-201ENST00000261438 FERMT3Q86UX7 667 aa20.52■□□□□ 0.87
KLF3-201ENST00000261438 JAKMIP1Q96N16 626 aaKnown RBP20.52■□□□□ 0.87
KLF3-201ENST00000261438 KDM2BQ8NHM5 1336 aa20.52■□□□□ 0.87
KLF3-201ENST00000261438 CBFA2T2O43439 604 aa20.51■□□□□ 0.87
KLF3-201ENST00000261438 MAP4K4O95819 1239 aaPredicted RBP20.51■□□□□ 0.87
KLF3-201ENST00000261438 RBM25P49756 843 aaKnown RBP20.51■□□□□ 0.87
KLF3-201ENST00000261438 CCT4P50991 539 aaKnown RBP20.51■□□□□ 0.87
KLF3-201ENST00000261438 NEMFO60524 1076 aa20.51■□□□□ 0.87
KLF3-201ENST00000261438 SMARCE1Q969G3 411 aa20.51■□□□□ 0.87
KLF3-201ENST00000261438 SAFBQ15424 915 aaKnown RBP eCLIP20.5■□□□□ 0.87
KLF3-201ENST00000261438 C9orf84Q5VXU9 1444 aa20.5■□□□□ 0.87
KLF3-201ENST00000261438 CLSTN1O94985 981 aa20.5■□□□□ 0.87
KLF3-201ENST00000261438 ALDH1L2Q3SY69 923 aa20.5■□□□□ 0.87
KLF3-201ENST00000261438 URI1O94763 535 aaPredicted RBP20.49■□□□□ 0.87
KLF3-201ENST00000261438 CEP135Q66GS9 1140 aa20.49■□□□□ 0.87
KLF3-201ENST00000261438 FILIP1LQ4L180 1135 aa20.49■□□□□ 0.87
KLF3-201ENST00000261438 SMARCA5O60264 1052 aaPredicted RBP20.49■□□□□ 0.87
KLF3-201ENST00000261438 CCDC83Q8IWF9 413 aa20.49■□□□□ 0.87
KLF3-201ENST00000261438 GAS2L2Q8NHY3 880 aa20.49■□□□□ 0.87
KLF3-201ENST00000261438 CKAP2LQ8IYA6 745 aa20.49■□□□□ 0.87
KLF3-201ENST00000261438 DCTN1Q14203 1278 aa20.48■□□□□ 0.87
KLF3-201ENST00000261438 NAP1L1P55209 391 aaKnown RBP20.48■□□□□ 0.87
KLF3-201ENST00000261438 NUCB1Q02818 461 aa20.48■□□□□ 0.87
KLF3-201ENST00000261438 CCDC191Q8NCU4 936 aa20.48■□□□□ 0.87
KLF3-201ENST00000261438 SCAND2PQ9GZW5 306 aaPredicted RBP20.48■□□□□ 0.87
KLF3-201ENST00000261438 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.48■□□□□ 0.876e-7■■□□□ 12.2
KLF3-201ENST00000261438 CCDC30Q5VVM6 783 aa20.48■□□□□ 0.87
KLF3-201ENST00000261438 RBM42Q9BTD8 480 aaKnown RBP20.48■□□□□ 0.87
KLF3-201ENST00000261438 BLOC1S2Q6QNY1 142 aa20.47■□□□□ 0.87
KLF3-201ENST00000261438 NFXL1Q6ZNB6 911 aa20.47■□□□□ 0.87
KLF3-201ENST00000261438 RALYLQ86SE5 291 aaKnown RBP20.47■□□□□ 0.87
KLF3-201ENST00000261438 CASTP20810 708 aaKnown RBP20.47■□□□□ 0.87
KLF3-201ENST00000261438 UBE2HP62256 183 aa20.47■□□□□ 0.87
KLF3-201ENST00000261438 CEP89Q96ST8 783 aa20.47■□□□□ 0.87
KLF3-201ENST00000261438 CCDC47Q96A33 483 aaKnown RBP20.47■□□□□ 0.87
KLF3-201ENST00000261438 FEZ1Q99689 392 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms