RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 IPO8O15397 1037 aaKnown RBP20.67■□□□□ 0.9
UBE3D-201ENST00000237186 DDX19BQ9UMR2 479 aa20.67■□□□□ 0.9
UBE3D-201ENST00000237186 HMOX1P09601 288 aa20.66■□□□□ 0.9
UBE3D-201ENST00000237186 ZNF853P0CG23 659 aa20.66■□□□□ 0.9
UBE3D-201ENST00000237186 IFT57Q9NWB7 429 aa20.66■□□□□ 0.9
UBE3D-201ENST00000237186 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.65■□□□□ 0.9
UBE3D-201ENST00000237186 NOB1Q9ULX3 412 aaKnown RBP20.65■□□□□ 0.9
UBE3D-201ENST00000237186 ACEP12821 1306 aa20.64■□□□□ 0.9
UBE3D-201ENST00000237186 ADAMTSL3P82987 1691 aa20.64■□□□□ 0.9
UBE3D-201ENST00000237186 GNAI1P63096 354 aa20.64■□□□□ 0.89
UBE3D-201ENST00000237186 LMOD3Q0VAK6 560 aa20.64■□□□□ 0.89
UBE3D-201ENST00000237186 RRS1Q15050 365 aaKnown RBP20.64■□□□□ 0.89
UBE3D-201ENST00000237186 OVOS2A0A0J9YW53 1432 aa20.63■□□□□ 0.89
UBE3D-201ENST00000237186 OVOS2Q6IE36 1432 aa20.63■□□□□ 0.89
UBE3D-201ENST00000237186 HDAC1Q13547 482 aaPredicted RBP20.63■□□□□ 0.89
UBE3D-201ENST00000237186 USP6P35125 1406 aa20.63■□□□□ 0.89
UBE3D-201ENST00000237186 PTCH1Q13635 1447 aa20.63■□□□□ 0.89
UBE3D-201ENST00000237186 SSH2Q76I76 1423 aa20.63■□□□□ 0.89
UBE3D-201ENST00000237186 SLC26A8Q96RN1 970 aa20.62■□□□□ 0.89
UBE3D-201ENST00000237186 TOPAZ1Q8N9V7 1692 aa20.62■□□□□ 0.89
UBE3D-201ENST00000237186 CEP170BQ9Y4F5 1589 aaPredicted RBP20.62■□□□□ 0.89
UBE3D-201ENST00000237186 USP31Q70CQ4 1352 aa20.61■□□□□ 0.89
UBE3D-201ENST00000237186 ITSN1Q15811 1721 aa20.61■□□□□ 0.89
UBE3D-201ENST00000237186 PDZRN3Q9UPQ7 1066 aa20.61■□□□□ 0.89
UBE3D-201ENST00000237186 AMOTL2Q9Y2J4 779 aa20.61■□□□□ 0.89
UBE3D-201ENST00000237186 NRKQ7Z2Y5 1582 aa20.6■□□□□ 0.89
UBE3D-201ENST00000237186 VAMP4O75379 141 aa20.6■□□□□ 0.89
UBE3D-201ENST00000237186 ARHGAP45Q92619 1136 aa20.6■□□□□ 0.89
UBE3D-201ENST00000237186 CFAP44Q96MT7 982 aa20.59■□□□□ 0.89
UBE3D-201ENST00000237186 ZBTB40Q9NUA8 1239 aa20.59■□□□□ 0.89
UBE3D-201ENST00000237186 TMEM57Q8N5G2 664 aa20.58■□□□□ 0.89
UBE3D-201ENST00000237186 TTC21AQ8NDW8 1320 aa20.58■□□□□ 0.88
UBE3D-201ENST00000237186 ITPRIPQ8IWB1 547 aa20.58■□□□□ 0.88
UBE3D-201ENST00000237186 DIP2AQ14689 1571 aa20.57■□□□□ 0.88
UBE3D-201ENST00000237186 EIF4A2Q14240 407 aaKnown RBP20.57■□□□□ 0.88
UBE3D-201ENST00000237186 MRPL50Q8N5N7 158 aaKnown RBP20.56■□□□□ 0.88
UBE3D-201ENST00000237186 USP19O94966 1318 aa20.56■□□□□ 0.88
UBE3D-201ENST00000237186 THUMPD2Q9BTF0 503 aaKnown RBP20.56■□□□□ 0.88
UBE3D-201ENST00000237186 MBIPQ9NS73 344 aa20.56■□□□□ 0.88
UBE3D-201ENST00000237186 PIK3R4Q99570 1358 aa20.56■□□□□ 0.88
UBE3D-201ENST00000237186 SMC5Q8IY18 1101 aa20.55■□□□□ 0.88
UBE3D-201ENST00000237186 LAS1LQ9Y4W2 734 aaKnown RBP20.55■□□□□ 0.88
UBE3D-201ENST00000237186 NBR1Q14596 966 aa20.54■□□□□ 0.88
UBE3D-201ENST00000237186 CHMP4BQ9H444 224 aaKnown RBP20.54■□□□□ 0.88
UBE3D-201ENST00000237186 USP35Q9P2H5 1018 aa20.52■□□□□ 0.88
UBE3D-201ENST00000237186 ZNF142P52746 1687 aaPredicted RBP20.52■□□□□ 0.88
UBE3D-201ENST00000237186 NUTM2FA1L443 756 aa20.52■□□□□ 0.87
UBE3D-201ENST00000237186 TSPYL6Q8N831 410 aa20.52■□□□□ 0.87
UBE3D-201ENST00000237186 NALCNQ8IZF0 1738 aa20.51■□□□□ 0.87
UBE3D-201ENST00000237186 SULT6B1Q6IMI4 303 aa20.51■□□□□ 0.87
UBE3D-201ENST00000237186 TWISTNBQ3B726 338 aaPredicted RBP20.5■□□□□ 0.87
UBE3D-201ENST00000237186 AEBP1Q8IUX7 1158 aa20.5■□□□□ 0.87
UBE3D-201ENST00000237186 ANKARQ7Z5J8 1434 aa20.49■□□□□ 0.87
UBE3D-201ENST00000237186 ZBTB7BO15156 539 aaPredicted RBP20.49■□□□□ 0.87
UBE3D-201ENST00000237186 SEC24BO95487 1268 aa20.49■□□□□ 0.87
UBE3D-201ENST00000237186 HSP90AB2PQ58FF8 381 aa20.49■□□□□ 0.87
UBE3D-201ENST00000237186 ANKLE2Q86XL3 938 aa20.49■□□□□ 0.87
UBE3D-201ENST00000237186 SETD1BQ9UPS6 1966 aaKnown RBP20.48■□□□□ 0.87
UBE3D-201ENST00000237186 C8orf58Q8NAV2 365 aa20.48■□□□□ 0.87
UBE3D-201ENST00000237186 FAM83GA6ND36 823 aa20.47■□□□□ 0.87
UBE3D-201ENST00000237186 DAXXQ9UER7 740 aaPredicted RBP20.47■□□□□ 0.87
UBE3D-201ENST00000237186 ABCC4O15439 1325 aa20.47■□□□□ 0.87
UBE3D-201ENST00000237186 VIRMAQ69YN4 1812 aaKnown RBP20.47■□□□□ 0.87
UBE3D-201ENST00000237186 HAP1P54257 671 aaPredicted RBP20.47■□□□□ 0.87
UBE3D-201ENST00000237186 RTL5Q5HYW3 569 aaPredicted RBP20.47■□□□□ 0.87
UBE3D-201ENST00000237186 ARHGEF10O15013 1369 aa20.47■□□□□ 0.87
UBE3D-201ENST00000237186 XRN1Q8IZH2 1706 aaKnown RBP20.47■□□□□ 0.87
UBE3D-201ENST00000237186 SBNO1A3KN83 1393 aa20.46■□□□□ 0.87
UBE3D-201ENST00000237186 CHL1O00533 1208 aa20.46■□□□□ 0.87
UBE3D-201ENST00000237186 MAP3K19Q56UN5 1328 aa20.46■□□□□ 0.87
UBE3D-201ENST00000237186 NGDNQ8NEJ9 315 aaKnown RBP20.46■□□□□ 0.87
UBE3D-201ENST00000237186 RGPD1P0DJD0 1748 aa20.46■□□□□ 0.87
UBE3D-201ENST00000237186 PEAK1Q9H792 1746 aa20.45■□□□□ 0.86
UBE3D-201ENST00000237186 KIF24Q5T7B8 1368 aa20.45■□□□□ 0.86
UBE3D-201ENST00000237186 DCTN1Q14203 1278 aa20.45■□□□□ 0.86
UBE3D-201ENST00000237186 API5Q9BZZ5 524 aaKnown RBP20.45■□□□□ 0.86
UBE3D-201ENST00000237186 FLT4P35916 1363 aa20.44■□□□□ 0.86
UBE3D-201ENST00000237186 NUCB1Q02818 461 aa20.44■□□□□ 0.86
UBE3D-201ENST00000237186 KDRP35968 1356 aa20.44■□□□□ 0.86
UBE3D-201ENST00000237186 KIAA0232Q92628 1395 aa20.44■□□□□ 0.86
UBE3D-201ENST00000237186 ELL2O00472 640 aaPredicted RBP20.43■□□□□ 0.86
UBE3D-201ENST00000237186 DLG5Q8TDM6 1919 aa20.42■□□□□ 0.86
UBE3D-201ENST00000237186 KCNA6P17658 529 aa20.42■□□□□ 0.86
UBE3D-201ENST00000237186 SLC4A3P48751 1232 aa20.42■□□□□ 0.86
UBE3D-201ENST00000237186 UPF2Q9HAU5 1272 aaKnown RBP20.42■□□□□ 0.86
UBE3D-201ENST00000237186 TBC1D32Q96NH3 1257 aa20.41■□□□□ 0.86
UBE3D-201ENST00000237186 GCC1Q96CN9 775 aa20.4■□□□□ 0.86
UBE3D-201ENST00000237186 IGSF1Q8N6C5 1336 aa20.4■□□□□ 0.86
UBE3D-201ENST00000237186 CRB1P82279 1406 aa20.39■□□□□ 0.86
UBE3D-201ENST00000237186 DEKP35659 375 aaKnown RBP20.39■□□□□ 0.86
UBE3D-201ENST00000237186 CHD1LQ86WJ1 897 aa20.37■□□□□ 0.85
UBE3D-201ENST00000237186 BECN1Q14457 450 aa20.37■□□□□ 0.85
UBE3D-201ENST00000237186 INTS3Q68E01 1043 aaKnown RBP20.37■□□□□ 0.85
UBE3D-201ENST00000237186 MCM10Q7L590 875 aa20.37■□□□□ 0.85
UBE3D-201ENST00000237186 HTATSF1O43719 755 aaKnown RBP20.36■□□□□ 0.85
UBE3D-201ENST00000237186 AMPHP49418 695 aa20.36■□□□□ 0.85
UBE3D-201ENST00000237186 NLRP6P59044 892 aa20.36■□□□□ 0.85
UBE3D-201ENST00000237186 EYA1Q99502 592 aa20.36■□□□□ 0.85
UBE3D-201ENST00000237186 MTHFSDQ2M296 383 aaKnown RBP20.35■□□□□ 0.85
UBE3D-201ENST00000237186 PIK3C2AO00443 1686 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms