RNA–Protein interactions for RNA: ENST00000233027.9

NEK4-201, Transcript of NIMA related kinase 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK4, Length 6,057 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK4-201ENST00000233027 IKQ13123 557 aaPredicted RBP15.89■□□□□ 0.13
NEK4-201ENST00000233027 RBM42Q9BTD8 480 aaKnown RBP15.89■□□□□ 0.13
NEK4-201ENST00000233027 ESCO1Q5FWF5 840 aa15.89■□□□□ 0.13
NEK4-201ENST00000233027 KIF6Q6ZMV9 814 aa15.89■□□□□ 0.13
NEK4-201ENST00000233027 ERICH3Q5RHP9 1530 aa15.89■□□□□ 0.13
NEK4-201ENST00000233027 MYL6BP14649 208 aa15.89■□□□□ 0.13
NEK4-201ENST00000233027 IL1RAPL2Q9NP60 686 aa15.89■□□□□ 0.13
NEK4-201ENST00000233027 CNNM1Q9NRU3 951 aa15.89■□□□□ 0.13
NEK4-201ENST00000233027 EHBP1L1Q8N3D4 1523 aa15.89■□□□□ 0.13
NEK4-201ENST00000233027 AXDND1Q5T1B0 1012 aaPredicted RBP15.88■□□□□ 0.13
NEK4-201ENST00000233027 PDRG1Q9NUG6 133 aa15.88■□□□□ 0.13
NEK4-201ENST00000233027 KRT85P78386 507 aa15.88■□□□□ 0.13
NEK4-201ENST00000233027 CCDC158Q5M9N0 1113 aa15.88■□□□□ 0.13
NEK4-201ENST00000233027 TMEM57Q8N5G2 664 aa15.88■□□□□ 0.13
NEK4-201ENST00000233027 CDK5RAP3Q96JB5 506 aa15.88■□□□□ 0.13
NEK4-201ENST00000233027 CCDC66A2RUB6 948 aa15.88■□□□□ 0.13
NEK4-201ENST00000233027 C20orf194Q5TEA3 1177 aa15.88■□□□□ 0.13
NEK4-201ENST00000233027 JAKMIP1Q96N16 626 aaKnown RBP15.88■□□□□ 0.13
NEK4-201ENST00000233027 RRS1Q15050 365 aaKnown RBP15.88■□□□□ 0.13
NEK4-201ENST00000233027 AACSQ86V21 672 aa15.88■□□□□ 0.13
NEK4-201ENST00000233027 CCDC112Q8NEF3 446 aa15.88■□□□□ 0.13
NEK4-201ENST00000233027 SYCE3A1L190 88 aa15.87■□□□□ 0.13
NEK4-201ENST00000233027 SLFN5Q08AF3 891 aa15.87■□□□□ 0.13
NEK4-201ENST00000233027 SPATA32Q96LK8 384 aa15.87■□□□□ 0.13
NEK4-201ENST00000233027 SRCIN1Q9C0H9 1055 aa15.87■□□□□ 0.13
NEK4-201ENST00000233027 ANKRD1Q15327 319 aa15.86■□□□□ 0.13
NEK4-201ENST00000233027 LEKR1Q6ZMV7 388 aa15.86■□□□□ 0.13
NEK4-201ENST00000233027 MEX3CQ5U5Q3 659 aaKnown RBP15.86■□□□□ 0.13
NEK4-201ENST00000233027 TXLNAP40222 546 aa15.86■□□□□ 0.13
NEK4-201ENST00000233027 PKNOX2Q96KN3 472 aa15.86■□□□□ 0.13
NEK4-201ENST00000233027 HFM1A2PYH4 1435 aa15.85■□□□□ 0.13
NEK4-201ENST00000233027 ESPNB1AK53 854 aa15.85■□□□□ 0.13
NEK4-201ENST00000233027 NUTM1Q86Y26 1132 aa15.85■□□□□ 0.13
NEK4-201ENST00000233027 CAMK4Q16566 473 aa15.85■□□□□ 0.13
NEK4-201ENST00000233027 SRGAP3O43295 1099 aa15.85■□□□□ 0.13
NEK4-201ENST00000233027 SMARCA5O60264 1052 aaPredicted RBP15.85■□□□□ 0.13
NEK4-201ENST00000233027 GPRASP1Q5JY77 1395 aa15.85■□□□□ 0.13
NEK4-201ENST00000233027 PPFIBP1Q86W92 1011 aa15.84■□□□□ 0.13
NEK4-201ENST00000233027 NUP133Q8WUM0 1156 aa15.84■□□□□ 0.13
NEK4-201ENST00000233027 CT47B1P0C2W7 299 aaPredicted RBP15.84■□□□□ 0.13
NEK4-201ENST00000233027 TIAM1Q13009 1591 aa15.84■□□□□ 0.13
NEK4-201ENST00000233027 CCDC69A6NI79 296 aa15.84■□□□□ 0.13
NEK4-201ENST00000233027 NUP62CLQ9H1M0 184 aa15.84■□□□□ 0.13
NEK4-201ENST00000233027 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.84■□□□□ 0.13
NEK4-201ENST00000233027 FKBP4Q02790 459 aaKnown RBP eCLIP15.84■□□□□ 0.13
NEK4-201ENST00000233027 OSCARQ8IYS5 282 aa15.84■□□□□ 0.13
NEK4-201ENST00000233027 BLOC1S2Q6QNY1 142 aa15.83■□□□□ 0.13
NEK4-201ENST00000233027 TSPYL1Q9H0U9 437 aa15.83■□□□□ 0.13
NEK4-201ENST00000233027 KRT18P05783 430 aaKnown RBP15.83■□□□□ 0.12
NEK4-201ENST00000233027 MIS18AQ9NYP9 233 aa15.83■□□□□ 0.12
NEK4-201ENST00000233027 PRG4Q92954 1404 aaPredicted RBP15.83■□□□□ 0.12
NEK4-201ENST00000233027 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.83■□□□□ 0.12
NEK4-201ENST00000233027 CASTP20810 708 aaKnown RBP15.82■□□□□ 0.12
NEK4-201ENST00000233027 JMYQ8N9B5 988 aa15.82■□□□□ 0.12
NEK4-201ENST00000233027 SPINK5Q9NQ38 1064 aaPredicted RBP15.82■□□□□ 0.12
NEK4-201ENST00000233027 DCTN1Q14203 1278 aa15.82■□□□□ 0.12
NEK4-201ENST00000233027 STRN4Q9NRL3 753 aa15.82■□□□□ 0.12
NEK4-201ENST00000233027 DAPK1P53355 1430 aa15.82■□□□□ 0.12
NEK4-201ENST00000233027 FILIP1Q7Z7B0 1213 aa15.82■□□□□ 0.12
NEK4-201ENST00000233027 THUMPD2Q9BTF0 503 aaKnown RBP15.82■□□□□ 0.12
NEK4-201ENST00000233027 NSD3Q9BZ95 1437 aa15.82■□□□□ 0.12
NEK4-201ENST00000233027 CCAR1Q8IX12 1150 aaKnown RBP15.82■□□□□ 0.12
NEK4-201ENST00000233027 SLC3A2P08195 630 aaKnown RBP15.81■□□□□ 0.12
NEK4-201ENST00000233027 DDX11Q96FC9 970 aa15.81■□□□□ 0.12
NEK4-201ENST00000233027 CIZ1Q9ULV3 898 aaPredicted RBP15.81■□□□□ 0.12
NEK4-201ENST00000233027 EXOC6BQ9Y2D4 811 aa15.81■□□□□ 0.12
NEK4-201ENST00000233027 RDXP35241 583 aaKnown RBP15.81■□□□□ 0.12
NEK4-201ENST00000233027 ZNF530Q6P9A1 599 aaPredicted RBP15.81■□□□□ 0.12
NEK4-201ENST00000233027 KLHL34Q8N239 644 aa15.81■□□□□ 0.12
NEK4-201ENST00000233027 SYNJ2O15056 1496 aa15.81■□□□□ 0.12
NEK4-201ENST00000233027 ZNHIT6Q9NWK9 470 aaKnown RBP15.81■□□□□ 0.12
NEK4-201ENST00000233027 FAM193AP78312 1265 aa15.81■□□□□ 0.12
NEK4-201ENST00000233027 CABP4P57796 275 aa15.81■□□□□ 0.12
NEK4-201ENST00000233027 DHX37Q8IY37 1157 aaKnown RBP15.8■□□□□ 0.12
NEK4-201ENST00000233027 MYO6Q9UM54 1294 aa15.8■□□□□ 0.12
NEK4-201ENST00000233027 TMPOP42166 694 aaKnown RBP15.8■□□□□ 0.12
NEK4-201ENST00000233027 ATP2B2Q01814 1243 aa15.8■□□□□ 0.12
NEK4-201ENST00000233027 TANGO6Q9C0B7 1094 aa15.8■□□□□ 0.12
NEK4-201ENST00000233027 DEF6Q9H4E7 631 aa15.8■□□□□ 0.12
NEK4-201ENST00000233027 ZHX3Q9H4I2 956 aa15.8■□□□□ 0.12
NEK4-201ENST00000233027 TATP17735 454 aaPredicted RBP15.8■□□□□ 0.12
NEK4-201ENST00000233027 TRIM22Q8IYM9 498 aa15.8■□□□□ 0.12
NEK4-201ENST00000233027 DACH1Q9UI36 760 aa15.8■□□□□ 0.12
NEK4-201ENST00000233027 SUPT6HQ7KZ85 1726 aaKnown RBP15.8■□□□□ 0.12
NEK4-201ENST00000233027 ERICH4A6NGS2 130 aa15.79■□□□□ 0.12
NEK4-201ENST00000233027 C11orf95C9JLR9 678 aaPredicted RBP15.79■□□□□ 0.12
NEK4-201ENST00000233027 CCDC83Q8IWF9 413 aa15.79■□□□□ 0.12
NEK4-201ENST00000233027 CCDC181Q5TID7 509 aa15.79■□□□□ 0.12
NEK4-201ENST00000233027 CCDC191Q8NCU4 936 aa15.79■□□□□ 0.12
NEK4-201ENST00000233027 CNKSR2Q8WXI2 1034 aa15.79■□□□□ 0.12
NEK4-201ENST00000233027 RTEL1-TNFRSF6BF6WH68 1400 aa15.79■□□□□ 0.12
NEK4-201ENST00000233027 PIP4K2AP48426 406 aaPredicted RBP15.78■□□□□ 0.12
NEK4-201ENST00000233027 BTBD11A6QL63 1104 aa15.78■□□□□ 0.12
NEK4-201ENST00000233027 FERMT3Q86UX7 667 aa15.78■□□□□ 0.12
NEK4-201ENST00000233027 UPF3BQ9BZI7 483 aaKnown RBP15.78■□□□□ 0.12
NEK4-201ENST00000233027 CBFA2T2O43439 604 aa15.78■□□□□ 0.12
NEK4-201ENST00000233027 DDX54Q8TDD1 881 aaKnown RBP15.78■□□□□ 0.12
NEK4-201ENST00000233027 PIBF1Q8WXW3 757 aa15.78■□□□□ 0.12
NEK4-201ENST00000233027 ZSCAN31Q96LW9 406 aaPredicted RBP15.78■□□□□ 0.12
NEK4-201ENST00000233027 HECW1Q76N89 1606 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 317.9 ms