RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 ERICH3Q5RHP9 1530 aa22.58■■□□□ 1.2
SMPD3-201ENST00000219334 STK11IPQ8N1F8 1099 aa22.58■■□□□ 1.2
SMPD3-201ENST00000219334 CCDC69A6NI79 296 aa22.57■■□□□ 1.2
SMPD3-201ENST00000219334 RDXP35241 583 aaKnown RBP22.57■■□□□ 1.2
SMPD3-201ENST00000219334 STK38Q15208 465 aa22.57■■□□□ 1.2
SMPD3-201ENST00000219334 TMOD2Q9NZR1 351 aa22.57■■□□□ 1.2
SMPD3-201ENST00000219334 CDR1P51861 262 aa22.57■■□□□ 1.2
SMPD3-201ENST00000219334 PDZRN3Q9UPQ7 1066 aa22.57■■□□□ 1.2
SMPD3-201ENST00000219334 HSP90AB2PQ58FF8 381 aa22.57■■□□□ 1.2
SMPD3-201ENST00000219334 JMYQ8N9B5 988 aa22.57■■□□□ 1.2
SMPD3-201ENST00000219334 TOPBP1Q92547 1522 aa22.57■■□□□ 1.2
SMPD3-201ENST00000219334 ZNF652Q9Y2D9 606 aa22.57■■□□□ 1.2
SMPD3-201ENST00000219334 RAI14Q9P0K7 980 aa22.56■■□□□ 1.2
SMPD3-201ENST00000219334 FCHSD2O94868 740 aa22.56■■□□□ 1.2
SMPD3-201ENST00000219334 MAGEC2Q9UBF1 373 aaPredicted RBP22.56■■□□□ 1.2
SMPD3-201ENST00000219334 CYP46A1Q9Y6A2 500 aa22.56■■□□□ 1.2
SMPD3-201ENST00000219334 RABEP1Q15276 862 aa22.55■■□□□ 1.2
SMPD3-201ENST00000219334 RUFY1Q96T51 708 aa22.55■■□□□ 1.2
SMPD3-201ENST00000219334 SRGAP3O43295 1099 aa22.55■■□□□ 1.2
SMPD3-201ENST00000219334 GNAT3A8MTJ3 354 aa22.54■■□□□ 1.2
SMPD3-201ENST00000219334 PIP4K2AP48426 406 aaPredicted RBP22.54■■□□□ 1.2
SMPD3-201ENST00000219334 ANKRD1Q15327 319 aa22.54■■□□□ 1.2
SMPD3-201ENST00000219334 FILIP1LQ4L180 1135 aa22.54■■□□□ 1.2
SMPD3-201ENST00000219334 AACSQ86V21 672 aa22.54■■□□□ 1.2
SMPD3-201ENST00000219334 IFT57Q9NWB7 429 aa22.54■■□□□ 1.2
SMPD3-201ENST00000219334 SETQ01105 290 aaPredicted RBP22.54■■□□□ 1.2
SMPD3-201ENST00000219334 TMOD3Q9NYL9 352 aa22.54■■□□□ 1.2
SMPD3-201ENST00000219334 SYCP1Q15431 976 aa22.54■■□□□ 1.2
SMPD3-201ENST00000219334 NUP133Q8WUM0 1156 aa22.54■■□□□ 1.2
SMPD3-201ENST00000219334 ARAP1Q96P48 1450 aa22.53■■□□□ 1.2
SMPD3-201ENST00000219334 MNS1Q8NEH6 495 aa22.53■■□□□ 1.2
SMPD3-201ENST00000219334 LRP2BPQ9P2M1 347 aa22.53■■□□□ 1.2
SMPD3-201ENST00000219334 ZPR1O75312 459 aa22.53■■□□□ 1.2
SMPD3-201ENST00000219334 TDO2P48775 406 aa22.53■■□□□ 1.2
SMPD3-201ENST00000219334 ATF7IPQ6VMQ6 1270 aa22.52■■□□□ 1.2
SMPD3-201ENST00000219334 CTNNA3Q9UI47 895 aa22.52■■□□□ 1.2
SMPD3-201ENST00000219334 POLA1P09884 1462 aaPredicted RBP22.51■■□□□ 1.19
SMPD3-201ENST00000219334 PTCD1O75127 700 aaKnown RBP22.51■■□□□ 1.19
SMPD3-201ENST00000219334 CD109Q6YHK3 1445 aa22.51■■□□□ 1.19
SMPD3-201ENST00000219334 LETM1O95202 739 aaPredicted RBP22.51■■□□□ 1.19
SMPD3-201ENST00000219334 UBAC1Q9BSL1 405 aa22.51■■□□□ 1.19
SMPD3-201ENST00000219334 ADAMTS2O95450 1211 aa22.5■■□□□ 1.19
SMPD3-201ENST00000219334 HECW1Q76N89 1606 aa22.5■■□□□ 1.19
SMPD3-201ENST00000219334 NBPF8Q3BBV2 869 aa22.49■■□□□ 1.19
SMPD3-201ENST00000219334 CCDC85AQ96PX6 553 aaPredicted RBP22.49■■□□□ 1.19
SMPD3-201ENST00000219334 NFE2L2Q16236 605 aa22.49■■□□□ 1.19
SMPD3-201ENST00000219334 ZHX3Q9H4I2 956 aa22.49■■□□□ 1.19
SMPD3-201ENST00000219334 MPHOSPH10O00566 681 aaKnown RBP22.49■■□□□ 1.19
SMPD3-201ENST00000219334 MBD3O95983 291 aa22.49■■□□□ 1.19
SMPD3-201ENST00000219334 AK7Q96M32 723 aa22.48■■□□□ 1.19
SMPD3-201ENST00000219334 BCAR3O75815 825 aa22.48■■□□□ 1.19
SMPD3-201ENST00000219334 SMARCE1Q969G3 411 aa22.48■■□□□ 1.19
SMPD3-201ENST00000219334 NOL7Q9UMY1 257 aaKnown RBP22.48■■□□□ 1.19
SMPD3-201ENST00000219334 CC2D2AQ9P2K1 1620 aa22.48■■□□□ 1.19
SMPD3-201ENST00000219334 NGLY1Q96IV0 654 aa22.48■■□□□ 1.19
SMPD3-201ENST00000219334 PDCL3Q9H2J4 239 aa22.48■■□□□ 1.19
SMPD3-201ENST00000219334 FMNL2Q96PY5 1086 aa22.47■■□□□ 1.19
SMPD3-201ENST00000219334 CEBPZQ03701 1054 aaKnown RBP22.47■■□□□ 1.19
SMPD3-201ENST00000219334 ACBD3Q9H3P7 528 aa22.47■■□□□ 1.19
SMPD3-201ENST00000219334 STK3Q13188 491 aa22.47■■□□□ 1.19
SMPD3-201ENST00000219334 WAPLQ7Z5K2 1190 aa22.47■■□□□ 1.19
SMPD3-201ENST00000219334 CAGE1Q8TC20 777 aa22.47■■□□□ 1.19
SMPD3-201ENST00000219334 IDH1O75874 414 aaKnown RBP22.47■■□□□ 1.19
SMPD3-201ENST00000219334 PATL2C9JE40 543 aaKnown RBP22.46■■□□□ 1.19
SMPD3-201ENST00000219334 CDKL5O76039 1030 aa22.46■■□□□ 1.19
SMPD3-201ENST00000219334 MAP4K4O95819 1239 aaPredicted RBP22.46■■□□□ 1.19
SMPD3-201ENST00000219334 ARGLU1Q9NWB6 273 aaPredicted RBP22.46■■□□□ 1.19
SMPD3-201ENST00000219334 PHF8Q9UPP1 1060 aa22.46■■□□□ 1.19
SMPD3-201ENST00000219334 ABCF2Q9UG63 623 aa22.46■■□□□ 1.19
SMPD3-201ENST00000219334 DAPK1P53355 1430 aa22.46■■□□□ 1.19
SMPD3-201ENST00000219334 DMRT2Q9Y5R5 561 aa22.46■■□□□ 1.19
SMPD3-201ENST00000219334 AMOTQ4VCS5 1084 aa22.46■■□□□ 1.19
SMPD3-201ENST00000219334 METTL24Q5JXM2 366 aa22.46■■□□□ 1.19
SMPD3-201ENST00000219334 TRIM5Q9C035 493 aa22.46■■□□□ 1.19
SMPD3-201ENST00000219334 STIM1Q13586 685 aa22.45■■□□□ 1.19
SMPD3-201ENST00000219334 SMC2O95347 1197 aa22.45■■□□□ 1.18
SMPD3-201ENST00000219334 FIBPO43427 364 aa22.45■■□□□ 1.18
SMPD3-201ENST00000219334 AEBP1Q8IUX7 1158 aa22.45■■□□□ 1.18
SMPD3-201ENST00000219334 WDHD1O75717 1129 aaPredicted RBP22.45■■□□□ 1.18
SMPD3-201ENST00000219334 BRPF1P55201 1214 aaPredicted RBP22.45■■□□□ 1.18
SMPD3-201ENST00000219334 MYO6Q9UM54 1294 aa22.44■■□□□ 1.18
SMPD3-201ENST00000219334 KIAA0586Q9BVV6 1533 aa22.44■■□□□ 1.18
SMPD3-201ENST00000219334 BLOC1S2Q6QNY1 142 aa22.44■■□□□ 1.18
SMPD3-201ENST00000219334 AIDAQ96BJ3 306 aa22.44■■□□□ 1.18
SMPD3-201ENST00000219334 EPRSP07814 1512 aaKnown RBP22.44■■□□□ 1.18
SMPD3-201ENST00000219334 TEX35Q5T0J7 233 aa22.44■■□□□ 1.18
SMPD3-201ENST00000219334 FOXO3O43524 673 aa22.44■■□□□ 1.18
SMPD3-201ENST00000219334 MVPQ14764 893 aaKnown RBP22.44■■□□□ 1.18
SMPD3-201ENST00000219334 CAVIN4Q5BKX8 364 aa22.43■■□□□ 1.18
SMPD3-201ENST00000219334 ZNF287Q9HBT7 754 aa22.43■■□□□ 1.18
SMPD3-201ENST00000219334 TTLL5Q6EMB2 1281 aa22.43■■□□□ 1.18
SMPD3-201ENST00000219334 BMP2KQ9NSY1 1161 aaPredicted RBP22.43■■□□□ 1.18
SMPD3-201ENST00000219334 AKAP2Q9Y2D5 859 aa22.43■■□□□ 1.18
SMPD3-201ENST00000219334 ZNF76P36508 570 aa22.43■■□□□ 1.18
SMPD3-201ENST00000219334 LARP1Q6PKG0 1096 aaKnown RBP22.43■■□□□ 1.18
SMPD3-201ENST00000219334 RPAP2Q8IXW5 612 aaPredicted RBP22.43■■□□□ 1.18
SMPD3-201ENST00000219334 AMOTL2Q9Y2J4 779 aa22.43■■□□□ 1.18
SMPD3-201ENST00000219334 IFIT1P09914 478 aaKnown RBP22.42■■□□□ 1.18
SMPD3-201ENST00000219334 RNF214Q8ND24 703 aa22.42■■□□□ 1.18
SMPD3-201ENST00000219334 SPINK5Q9NQ38 1064 aaPredicted RBP22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms