RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 PPFIBP1Q86W92 1011 aa12.34□□□□□ -0.43
VCL-201ENST00000211998 PNISRQ8TF01 805 aaKnown RBP12.34□□□□□ -0.43
VCL-201ENST00000211998 GBP3Q9H0R5 595 aa12.34□□□□□ -0.43
VCL-201ENST00000211998 GRIN2BQ13224 1484 aa12.34□□□□□ -0.43
VCL-201ENST00000211998 IGSF3O75054 1194 aa12.34□□□□□ -0.43
VCL-201ENST00000211998 SAFBQ15424 915 aaKnown RBP eCLIP12.34□□□□□ -0.43
VCL-201ENST00000211998 DNAAF4Q8WXU2 420 aa12.34□□□□□ -0.43
VCL-201ENST00000211998 SYNJ2O15056 1496 aa12.34□□□□□ -0.43
VCL-201ENST00000211998 SSFA2P28290 1259 aa12.34□□□□□ -0.43
VCL-201ENST00000211998 FBXO3Q9UK99 471 aa12.34□□□□□ -0.43
VCL-201ENST00000211998 TXLNBQ8N3L3 684 aa12.33□□□□□ -0.44
VCL-201ENST00000211998 ZNF396Q96N95 335 aaPredicted RBP12.33□□□□□ -0.44
VCL-201ENST00000211998 CRACR2AQ9BSW2 395 aa12.33□□□□□ -0.44
VCL-201ENST00000211998 NCAPD3P42695 1498 aa12.33□□□□□ -0.44
VCL-201ENST00000211998 SCAPERQ9BY12 1400 aa12.33□□□□□ -0.44
VCL-201ENST00000211998 NECTIN2Q92692 538 aa12.33□□□□□ -0.44
VCL-201ENST00000211998 CBFA2T2O43439 604 aa12.33□□□□□ -0.44
VCL-201ENST00000211998 URI1O94763 535 aaPredicted RBP12.33□□□□□ -0.44
VCL-201ENST00000211998 CT47A1Q5JQC4 288 aaPredicted RBP12.33□□□□□ -0.44
VCL-201ENST00000211998 KIF21BO75037 1637 aa12.33□□□□□ -0.44
VCL-201ENST00000211998 OFD1O75665 1012 aa12.33□□□□□ -0.44
VCL-201ENST00000211998 CCDC181Q5TID7 509 aa12.33□□□□□ -0.44
VCL-201ENST00000211998 MAP3K11Q16584 847 aa12.32□□□□□ -0.44
VCL-201ENST00000211998 NFXL1Q6ZNB6 911 aa12.32□□□□□ -0.44
VCL-201ENST00000211998 RIC3Q7Z5B4 369 aa12.32□□□□□ -0.44
VCL-201ENST00000211998 STK11IPQ8N1F8 1099 aa12.32□□□□□ -0.44
VCL-201ENST00000211998 GPRASP1Q5JY77 1395 aa12.32□□□□□ -0.44
VCL-201ENST00000211998 RRAGDQ9NQL2 400 aaPredicted RBP12.32□□□□□ -0.44
VCL-201ENST00000211998 CEP57L1Q8IYX8 460 aa12.32□□□□□ -0.44
VCL-201ENST00000211998 C1orf115Q9H7X2 142 aa12.32□□□□□ -0.44
VCL-201ENST00000211998 NINLQ9Y2I6 1382 aa12.32□□□□□ -0.44
VCL-201ENST00000211998 DHX16O60231 1041 aaKnown RBP12.32□□□□□ -0.44
VCL-201ENST00000211998 STK38Q15208 465 aa12.32□□□□□ -0.44
VCL-201ENST00000211998 HSP90AB2PQ58FF8 381 aa12.31□□□□□ -0.44
VCL-201ENST00000211998 CCDC183Q5T5S1 534 aa12.31□□□□□ -0.44
VCL-201ENST00000211998 GAS2L2Q8NHY3 880 aa12.31□□□□□ -0.44
VCL-201ENST00000211998 RBM33Q96EV2 1170 aaKnown RBP12.31□□□□□ -0.44
VCL-201ENST00000211998 ZNF644Q9H582 1327 aaPredicted RBP12.31□□□□□ -0.44
VCL-201ENST00000211998 VGLL3A8MV65 326 aa12.31□□□□□ -0.44
VCL-201ENST00000211998 UPF3BQ9BZI7 483 aaKnown RBP12.31□□□□□ -0.44
VCL-201ENST00000211998 PLEKHH2Q8IVE3 1493 aa12.31□□□□□ -0.44
VCL-201ENST00000211998 UBTFL1P0CB47 393 aaPredicted RBP12.31□□□□□ -0.44
VCL-201ENST00000211998 RNF187Q5TA31 235 aaPredicted RBP12.31□□□□□ -0.44
VCL-201ENST00000211998 PAXIP1Q6ZW49 1069 aaPredicted RBP12.31□□□□□ -0.44
VCL-201ENST00000211998 CNTROBQ8N137 903 aa12.31□□□□□ -0.44
VCL-201ENST00000211998 NLRP2Q9NX02 1062 aa12.31□□□□□ -0.44
VCL-201ENST00000211998 HFM1A2PYH4 1435 aa12.31□□□□□ -0.44
VCL-201ENST00000211998 RAD21O60216 631 aa12.31□□□□□ -0.44
VCL-201ENST00000211998 ERLIN2O94905 339 aa12.31□□□□□ -0.44
VCL-201ENST00000211998 ADCY5O95622 1261 aa12.31□□□□□ -0.44
VCL-201ENST00000211998 CAMK4Q16566 473 aa12.31□□□□□ -0.44
VCL-201ENST00000211998 SPATA32Q96LK8 384 aa12.31□□□□□ -0.44
VCL-201ENST00000211998 TRMT1Q9NXH9 659 aaKnown RBP12.31□□□□□ -0.44
VCL-201ENST00000211998 GGNBP2Q9H3C7 697 aa12.3□□□□□ -0.44
VCL-201ENST00000211998 LRRFIP2Q9Y608 721 aaKnown RBP12.3□□□□□ -0.44
VCL-201ENST00000211998 JAKMIP3Q5VZ66 844 aa12.3□□□□□ -0.44
VCL-201ENST00000211998 AQRO60306 1485 aaKnown RBP eCLIP12.3□□□□□ -0.445e-7■■■□□ 18.9
VCL-201ENST00000211998 ERICH3Q5RHP9 1530 aa12.3□□□□□ -0.44
VCL-201ENST00000211998 HMOX1P09601 288 aa12.3□□□□□ -0.44
VCL-201ENST00000211998 ME1P48163 572 aa12.3□□□□□ -0.44
VCL-201ENST00000211998 LARP1BQ659C4 914 aaKnown RBP12.3□□□□□ -0.44
VCL-201ENST00000211998 RALYLQ86SE5 291 aaKnown RBP12.3□□□□□ -0.44
VCL-201ENST00000211998 TAX1BP1Q86VP1 789 aa12.3□□□□□ -0.44
VCL-201ENST00000211998 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.3□□□□□ -0.44
VCL-201ENST00000211998 CHD1LQ86WJ1 897 aa12.3□□□□□ -0.44
VCL-201ENST00000211998 CLIP2Q9UDT6 1046 aa12.3□□□□□ -0.44
VCL-201ENST00000211998 GNAI3P08754 354 aa12.29□□□□□ -0.44
VCL-201ENST00000211998 SFPQP23246 707 aaKnown RBP eCLIP12.29□□□□□ -0.44
VCL-201ENST00000211998 IQCEQ6IPM2 695 aa12.29□□□□□ -0.44
VCL-201ENST00000211998 ZNHIT6Q9NWK9 470 aaKnown RBP12.29□□□□□ -0.44
VCL-201ENST00000211998 NLRP6P59044 892 aa12.29□□□□□ -0.44
VCL-201ENST00000211998 NOLC1Q14978 699 aaKnown RBP eCLIP12.29□□□□□ -0.44
VCL-201ENST00000211998 CABP2Q9NPB3 220 aa12.29□□□□□ -0.44
VCL-201ENST00000211998 CASQ1P31415 396 aa12.29□□□□□ -0.44
VCL-201ENST00000211998 CCDC30Q5VVM6 783 aa12.28□□□□□ -0.44
VCL-201ENST00000211998 MICALCLQ6ZW33 695 aa12.28□□□□□ -0.44
VCL-201ENST00000211998 PAXBP1Q9Y5B6 917 aa12.28□□□□□ -0.44
VCL-201ENST00000211998 ENOX2Q16206 610 aaKnown RBP12.28□□□□□ -0.44
VCL-201ENST00000211998 NF2P35240 595 aa12.28□□□□□ -0.44
VCL-201ENST00000211998 ZSCAN12O43309 604 aa12.28□□□□□ -0.44
VCL-201ENST00000211998 ZNF830Q96NB3 372 aaPredicted RBP12.28□□□□□ -0.44
VCL-201ENST00000211998 KIF20AO95235 890 aa12.27□□□□□ -0.44
VCL-201ENST00000211998 TCP11L2Q8N4U5 519 aa12.27□□□□□ -0.44
VCL-201ENST00000211998 ZNF526Q8TF50 670 aaPredicted RBP12.27□□□□□ -0.44
VCL-201ENST00000211998 NOB1Q9ULX3 412 aaKnown RBP12.27□□□□□ -0.44
VCL-201ENST00000211998 ZKSCAN5Q9Y2L8 839 aa12.27□□□□□ -0.44
VCL-201ENST00000211998 EFCAB5A4FU69 1503 aa12.27□□□□□ -0.44
VCL-201ENST00000211998 KDM4AO75164 1064 aa12.27□□□□□ -0.44
VCL-201ENST00000211998 KLHL40Q2TBA0 621 aa12.27□□□□□ -0.44
VCL-201ENST00000211998 CEP135Q66GS9 1140 aa12.27□□□□□ -0.44
VCL-201ENST00000211998 CCDC43Q96MW1 224 aaKnown RBP12.27□□□□□ -0.44
VCL-201ENST00000211998 CYP46A1Q9Y6A2 500 aa12.27□□□□□ -0.44
VCL-201ENST00000211998 EXOSC9Q06265 439 aaKnown RBP12.27□□□□□ -0.45
VCL-201ENST00000211998 MVPQ14764 893 aaKnown RBP12.27□□□□□ -0.45
VCL-201ENST00000211998 ZSCAN23Q3MJ62 389 aa12.27□□□□□ -0.45
VCL-201ENST00000211998 ARHGAP29Q52LW3 1261 aa12.27□□□□□ -0.45
VCL-201ENST00000211998 PLEKHO1Q53GL0 409 aaPredicted RBP12.27□□□□□ -0.45
VCL-201ENST00000211998 BRMS1Q9HCU9 246 aa12.27□□□□□ -0.45
VCL-201ENST00000211998 MAGEC2Q9UBF1 373 aaPredicted RBP12.27□□□□□ -0.45
VCL-201ENST00000211998 MAP9Q49MG5 647 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms