RNA–Protein interactions for RNA: ENSMUST00000028728.5

Ubr1-201, Transcript of E3 ubiquitin-protein ligase UBR1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ubr1, Length 7,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr1-201ENSMUST00000028728 Cfap45Q9D9U9 551 aa11.96□□□□□ -0.49
Ubr1-201ENSMUST00000028728 Gm42641I6L9G2 585 aa11.96□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Babam1Q3UI43 333 aa11.96□□□□□ -0.5
Ubr1-201ENSMUST00000028728 AtripQ8BMG1 785 aa11.96□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Cdc45Q9Z1X9 566 aa11.96□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Jph4Q80WT0 628 aa11.95□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Frmd3Q8BHD4 595 aa11.95□□□□□ -0.5
Ubr1-201ENSMUST00000028728 CrcpO35427 148 aa11.95□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Adcy5P84309 1262 aa11.95□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Polr3aB2RXC6 1390 aa11.95□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Dync1i1O88485 628 aa11.95□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Clcn1Q64347 994 aa11.95□□□□□ -0.5
Ubr1-201ENSMUST00000028728 FosbP13346 338 aa11.95□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Lamb3Q61087 1168 aa11.95□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Iqgap2Q3UQ44 1575 aa11.95□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Kif2aP28740 705 aa11.94□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Rprd2Q6NXI6 1469 aaKnown RBP11.94□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Lrrcc1Q69ZB0 1026 aa11.94□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Maats1Q8BRC6 783 aa11.94□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Chmp7Q8R1T1 451 aa11.94□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Rasa1E9PYG6 1038 aa11.94□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Gm10093D3YYI8 482 aa11.94□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Hdac1O09106 482 aaKnown RBP11.94□□□□□ -0.5
Ubr1-201ENSMUST00000028728 PsapQ61207 557 aaKnown RBP11.94□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Ptpdc1Q6NZK8 747 aa11.94□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Ercc6lQ8BHK9 1240 aa11.94□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Smc1bQ920F6 1248 aa11.94□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Ube2hP62257 183 aa11.93□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Cdc37l1Q9CZP7 335 aa11.93□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Nap1l1P28656 391 aaKnown RBP11.93□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Uri1Q3TLD5 531 aa11.93□□□□□ -0.5
Ubr1-201ENSMUST00000028728 March6Q6ZQ89 909 aa11.93□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Gtpbp4Q99ME9 634 aaKnown RBP11.93□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Gnl2Q99LH1 728 aaKnown RBP11.93□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Ankrd1Q9CR42 319 aa11.93□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Pafah1b1P63005 410 aaKnown RBP11.93□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Ktn1Q61595 1327 aaKnown RBP11.92□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Jakmip3Q5DTN8 844 aa11.92□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Igbp1bQ9QZ29 343 aa11.92□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Srgap3Q812A2 1099 aa11.92□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Tango6Q8C3S2 1079 aa11.92□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Fam163aQ8CAA5 168 aa11.92□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Stim1P70302 685 aa11.92□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Cfap157Q0VFX2 523 aa11.92□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Ctr9Q62018 1173 aaKnown RBP11.92□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Gm7298A0A0N4SVU1 1476 aa11.92□□□□□ -0.5
Ubr1-201ENSMUST00000028728 AqrQ8CFQ3 1481 aaKnown RBP11.92□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Nkx1-2P42580 305 aa11.92□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Cdkl5Q3UTQ8 938 aa11.92□□□□□ -0.5
Ubr1-201ENSMUST00000028728 IbtkQ6ZPR6 1352 aaKnown RBP11.92□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Eif5P59325 429 aaKnown RBP11.92□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Ccdc178Q8CDV0 866 aa11.92□□□□□ -0.5
Ubr1-201ENSMUST00000028728 HypkQ9CR41 129 aa11.92□□□□□ -0.5
Ubr1-201ENSMUST00000028728 UvssaQ9D479 717 aa11.91□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Mphosph10Q810V0 681 aaKnown RBP11.91□□□□□ -0.5
Ubr1-201ENSMUST00000028728 NmiO35309 314 aa11.91□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Ccdc43Q9CR29 222 aaKnown RBP11.91□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Atp2b2Q9R0K7 1198 aa11.91□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Hspa4Q61316 841 aa11.91□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Mmel1Q9JLI3 765 aa11.91□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Zmym4A2A791 1549 aaKnown RBP11.91□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Lekr1B2RVN1 116 aa11.91□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Ccdc181Q80ZU5 509 aa11.91□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Ccdc96Q9CR92 584 aa11.91□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Ccdc191J3QQ27 883 aa11.91□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Prpf4bQ61136 1007 aaKnown RBP11.91□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Egfem1Q8C088 590 aa11.91□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Cwc27Q3TKY6 469 aa11.9□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Kcnj4P52189 445 aa11.9□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Grpel1Q99LP6 217 aa11.9□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Zmym3Q9JLM4 1370 aa11.9□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Gm21190A0A0G2JGJ6 266 aa11.9□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Tbc1d9Q3UYK3 1264 aa11.9□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Cep135Q6P5D4 1140 aa11.9□□□□□ -0.5
Ubr1-201ENSMUST00000028728 Gbp4Q61107 620 aa11.9□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Ccp110Q7TSH4 1004 aa11.9□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Trim30cD3YVI9 513 aa11.89□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Gm10471E9Q1C7 252 aa11.89□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Abcd1P48410 736 aa11.89□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Cct4P80315 539 aaKnown RBP11.89□□□□□ -0.51
Ubr1-201ENSMUST00000028728 CenphQ9QYM8 241 aa11.89□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Dnajc2P54103 621 aaKnown RBP11.89□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Wdr63B2RY71 923 aa11.89□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Gtf2f1Q3THK3 508 aaKnown RBP11.89□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Rbm28Q8CGC6 750 aaKnown RBP11.89□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Gjb2Q00977 226 aa11.89□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Rsph6aQ8CDR2 708 aa11.89□□□□□ -0.51
Ubr1-201ENSMUST00000028728 LlphQ9D945 130 aaKnown RBP11.89□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Grin2bQ01097 1482 aa11.89□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Lmbr1Q9JIT0 490 aa11.89□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Top2bQ64511 1612 aa11.89□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Gm21671G3UY31 267 aa11.88□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Clul1Q3ZRW6 464 aa11.88□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Bms1Q6PGF5 1284 aaKnown RBP11.88□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Rnf187Q8BFX1 236 aa11.88□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Snw1Q9CSN1 536 aaKnown RBP11.88□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Atf7ipQ7TT18 1306 aa11.88□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Trim25Q61510 634 aaKnown RBP11.88□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Pik3c2gO70167 1506 aa11.88□□□□□ -0.51
Ubr1-201ENSMUST00000028728 Stx1aO35526 288 aa11.88□□□□□ -0.51
Retrieved 100 of 22,080 RNA–protein pairs in 30.7 ms