RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 NYNRINQ9P2P1 1898 aaKnown RBP17.24■□□□□ 0.35
VPS29-204ENST00000548259 TOR1BO14657 336 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 GRAP2O75791 330 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 ENDOD1O94919 500 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 F9P00740 461 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 NTRK1P04629 796 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 JMJD7P0C870 316 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 SLC5A2P31639 672 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 GGCXP38435 758 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 ADKP55263 362 aaKnown RBP17.23■□□□□ 0.35
VPS29-204ENST00000548259 PFN3P60673 137 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 YPEL5P62699 121 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 CARD16Q5EG05 197 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 FAXCQ5TGI0 409 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 ZNF574Q6ZN55 896 aaPredicted RBP17.23■□□□□ 0.35
VPS29-204ENST00000548259 SLC35F3Q8IY50 421 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 PHACTR4Q8IZ21 702 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 TMEM74Q96NL1 305 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 GFM1Q96RP9 751 aaKnown RBP17.23■□□□□ 0.35
VPS29-204ENST00000548259 TRIM4Q9C037 500 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 INTS2Q9H0H0 1204 aaKnown RBP17.23■□□□□ 0.35
VPS29-204ENST00000548259 TKTL2Q9H0I9 626 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 EPB41L5Q9HCM4 733 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 STARD5Q9NSY2 213 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 KLF15Q9UIH9 416 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 STAP1Q9ULZ2 295 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 PCDHB11Q9Y5F2 797 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 WASF2Q9Y6W5 498 aa17.23■□□□□ 0.35
VPS29-204ENST00000548259 BICDL2A1A5D9 508 aa17.22■□□□□ 0.35
VPS29-204ENST00000548259 ILVBLA1L0T0 632 aa17.22■□□□□ 0.35
VPS29-204ENST00000548259 GOLGA6L4A6NEF3 574 aa17.22■□□□□ 0.35
VPS29-204ENST00000548259 IGLON5A6NGN9 336 aa17.22■□□□□ 0.35
VPS29-204ENST00000548259 RAD51BO15315 384 aa17.22■□□□□ 0.35
VPS29-204ENST00000548259 DAB1O75553 588 aa17.22■□□□□ 0.35
VPS29-204ENST00000548259 CNTN5O94779 1100 aa17.22■□□□□ 0.35
VPS29-204ENST00000548259 USP8P40818 1118 aa17.22■□□□□ 0.35
VPS29-204ENST00000548259 SERPINH1P50454 418 aaKnown RBP17.22■□□□□ 0.35
VPS29-204ENST00000548259 EIF2B5Q13144 721 aaKnown RBP17.22■□□□□ 0.35
VPS29-204ENST00000548259 FGL2Q14314 439 aa17.22■□□□□ 0.35
VPS29-204ENST00000548259 ALFQ53S48 1182 aa17.22■□□□□ 0.35
VPS29-204ENST00000548259 TFAP2DQ7Z6R9 452 aa17.22■□□□□ 0.35
VPS29-204ENST00000548259 FSTL5Q8N475 847 aaPredicted RBP17.22■□□□□ 0.35
VPS29-204ENST00000548259 ARL10Q8N8L6 244 aa17.22■□□□□ 0.35
VPS29-204ENST00000548259 EXD3Q8N9H8 876 aa17.22■□□□□ 0.35
VPS29-204ENST00000548259 OR6C4Q8NGE1 309 aa17.22■□□□□ 0.35
VPS29-204ENST00000548259 CPXM1Q96SM3 734 aa17.22■□□□□ 0.35
VPS29-204ENST00000548259 CAAP1Q9H8G2 361 aa17.22■□□□□ 0.35
VPS29-204ENST00000548259 ACSL6Q9UKU0 697 aa17.22■□□□□ 0.35
VPS29-204ENST00000548259 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.22■□□□□ 0.35
VPS29-204ENST00000548259 A0A0D9SEW6 157 aa17.21■□□□□ 0.35
VPS29-204ENST00000548259 TERTO14746 1132 aaKnown RBP17.21■□□□□ 0.35
VPS29-204ENST00000548259 AFPP02771 609 aaKnown RBP17.21■□□□□ 0.35
VPS29-204ENST00000548259 ALPIP09923 528 aa17.21■□□□□ 0.35
VPS29-204ENST00000548259 LIPCP11150 499 aa17.21■□□□□ 0.35
VPS29-204ENST00000548259 KRT10P13645 584 aa17.21■□□□□ 0.35
VPS29-204ENST00000548259 UGT1A5P35504 534 aa17.21■□□□□ 0.35
VPS29-204ENST00000548259 ETFBP38117 255 aa17.21■□□□□ 0.35
VPS29-204ENST00000548259 CCNHP51946 323 aaPredicted RBP17.21■□□□□ 0.35
VPS29-204ENST00000548259 GEMIN4P57678 1058 aaKnown RBP17.21■□□□□ 0.35
VPS29-204ENST00000548259 PPARDQ03181 441 aa17.21■□□□□ 0.35
VPS29-204ENST00000548259 C1orf61Q13536 156 aa17.21■□□□□ 0.35
VPS29-204ENST00000548259 ELOCQ15369 112 aa17.21■□□□□ 0.35
VPS29-204ENST00000548259 LVRNQ6Q4G3 990 aa17.21■□□□□ 0.35
VPS29-204ENST00000548259 PARS2Q7L3T8 475 aaKnown RBP17.21■□□□□ 0.35
VPS29-204ENST00000548259 SLC26A9Q7LBE3 791 aa17.21■□□□□ 0.35
VPS29-204ENST00000548259 ZDHHC17Q8IUH5 632 aa17.21■□□□□ 0.35
VPS29-204ENST00000548259 SDR16C5Q8N3Y7 309 aa17.21■□□□□ 0.35
VPS29-204ENST00000548259 RYBPQ8N488 228 aaPredicted RBP17.21■□□□□ 0.35
VPS29-204ENST00000548259 TMEM159Q96B96 161 aa17.21■□□□□ 0.35
VPS29-204ENST00000548259 C1orf74Q96LT6 269 aa17.21■□□□□ 0.35
VPS29-204ENST00000548259 KLF6Q99612 283 aaPredicted RBP17.21■□□□□ 0.35
VPS29-204ENST00000548259 SEMA3CQ99985 751 aa17.21■□□□□ 0.35
VPS29-204ENST00000548259 ZDHHC6Q9H6R6 413 aa17.21■□□□□ 0.35
VPS29-204ENST00000548259 ATP13A1Q9HD20 1204 aa17.21■□□□□ 0.35
VPS29-204ENST00000548259 GULP1Q9UBP9 304 aa17.21■□□□□ 0.35
VPS29-204ENST00000548259 DRGXA6NNA5 263 aa17.2■□□□□ 0.34
VPS29-204ENST00000548259 NTN3O00634 580 aaPredicted RBP17.2■□□□□ 0.34
VPS29-204ENST00000548259 NVLO15381 856 aaKnown RBP17.2■□□□□ 0.34
VPS29-204ENST00000548259 YY2O15391 372 aa17.2■□□□□ 0.34
VPS29-204ENST00000548259 SPINT1O43278 529 aa17.2■□□□□ 0.34
VPS29-204ENST00000548259 PPFIA2O75334 1257 aa17.2■□□□□ 0.34
VPS29-204ENST00000548259 GCATO75600 419 aa17.2■□□□□ 0.34
VPS29-204ENST00000548259 CTSEP14091 401 aa17.2■□□□□ 0.34
VPS29-204ENST00000548259 KRT9P35527 623 aa17.2■□□□□ 0.34
VPS29-204ENST00000548259 CXCR3P49682 368 aa17.2■□□□□ 0.34
VPS29-204ENST00000548259 SLC6A3Q01959 620 aa17.2■□□□□ 0.34
VPS29-204ENST00000548259 DEUP1Q05D60 604 aa17.2■□□□□ 0.34
VPS29-204ENST00000548259 DRAP1Q14919 205 aaPredicted RBP17.2■□□□□ 0.34
VPS29-204ENST00000548259 POLD3Q15054 466 aaPredicted RBP17.2■□□□□ 0.34
VPS29-204ENST00000548259 MANEAQ5SRI9 462 aa17.2■□□□□ 0.34
VPS29-204ENST00000548259 MACC1Q6ZN28 852 aa17.2■□□□□ 0.34
VPS29-204ENST00000548259 FAM183BPQ6ZVS7 135 aa17.2■□□□□ 0.34
VPS29-204ENST00000548259 PLPP6Q8IY26 295 aa17.2■□□□□ 0.34
VPS29-204ENST00000548259 RBFAQ8N0V3 343 aa17.2■□□□□ 0.34
VPS29-204ENST00000548259 C1orf131Q8NDD1 294 aaKnown RBP17.2■□□□□ 0.34
VPS29-204ENST00000548259 EXTL1Q92935 676 aa17.2■□□□□ 0.34
VPS29-204ENST00000548259 ISG20Q96AZ6 181 aaKnown RBP17.2■□□□□ 0.34
VPS29-204ENST00000548259 LRRC61Q9BV99 259 aa17.2■□□□□ 0.34
VPS29-204ENST00000548259 ARHGEF38Q9NXL2 777 aa17.2■□□□□ 0.34
VPS29-204ENST00000548259 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms