RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 KLK7P49862 253 aa19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 CLCN6P51797 869 aa19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 ADPRHP54922 357 aa19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 C21orf59P57076 290 aa19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 FAM193AP78312 1265 aa19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 CCDC15Q0P6D6 951 aa19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 SYCP1Q15431 976 aa19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 ARL13BQ3SXY8 428 aa19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 ALFQ53S48 1182 aa19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 C2CD6Q53TS8 623 aa19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 CCDC183Q5T5S1 534 aa19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 DCAF4L2Q8NA75 395 aa19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 SLC20A1Q8WUM9 679 aa19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 PCMTD1Q96MG8 357 aaPredicted RBP19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 CFAP57Q96MR6 1250 aa19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 CAMK1GQ96NX5 476 aa19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 PPARGC1AQ9UBK2 798 aaKnown RBP19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 APOBEC2Q9Y235 224 aaKnown RBP19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 MSRB2Q9Y3D2 182 aa19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 SLCO1B1Q9Y6L6 691 aa19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 ILVBLA1L0T0 632 aa19.55■□□□□ 0.72
CCDC28A-203ENST00000617445 FAM221BA6H8Z2 402 aa19.55■□□□□ 0.72
CCDC28A-203ENST00000617445 PCDHGA12O60330 932 aa19.55■□□□□ 0.72
CCDC28A-203ENST00000617445 VAV1P15498 845 aa19.55■□□□□ 0.72
CCDC28A-203ENST00000617445 CHRNB2P17787 502 aa19.55■□□□□ 0.72
CCDC28A-203ENST00000617445 DRD3P35462 400 aa19.55■□□□□ 0.72
CCDC28A-203ENST00000617445 CTSKP43235 329 aa19.55■□□□□ 0.72
CCDC28A-203ENST00000617445 UBXN1Q04323 297 aa19.55■□□□□ 0.72
CCDC28A-203ENST00000617445 SLC20A2Q08357 652 aa19.55■□□□□ 0.72
CCDC28A-203ENST00000617445 UNQ6494/PRO21346Q6UXR6 183 aa19.55■□□□□ 0.72
CCDC28A-203ENST00000617445 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP19.55■□□□□ 0.72
CCDC28A-203ENST00000617445 ERGIC2Q96RQ1 377 aa19.55■□□□□ 0.72
CCDC28A-203ENST00000617445 METTL5Q9NRN9 209 aaKnown RBP19.55■□□□□ 0.72
CCDC28A-203ENST00000617445 IGF2RP11717 2491 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 TMEM131Q92545 1883 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 TBC1D3DA0A087WVF3 549 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 TBC1D3IA0A087WXS9 549 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 TBC1D3EA0A087X179 549 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 TBC1D3KA0A087X1G2 549 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 CXorf51AA0A1B0GTR3 108 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 TBC1D3FA6NER0 549 aaPredicted RBP19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 TBC1D3LB9A6J9 549 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 EPHB6O15197 1021 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 LATO43561 262 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 HYAL3O43820 417 aaPredicted RBP19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 TBC1D3HP0C7X1 549 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 SRCP12931 536 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 UNGP13051 313 aaPredicted RBP19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 CD38P28907 300 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 SDC4P31431 198 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 PTPN9P43378 593 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 NSFP46459 744 aaKnown RBP19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 CCT8P50990 548 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 GSCP56915 257 aaPredicted RBP19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 NRG1Q02297 640 aaPredicted RBP19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 SLC45A4Q5BKX6 768 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 TBC1D3GQ6DHY5 549 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 TBC1D3CQ6IPX1 549 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 TRNP1Q6NT89 227 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 RAB44Q7Z6P3 723 aaPredicted RBP19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 PRPF39Q86UA1 669 aaKnown RBP19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 FAM131BQ86XD5 332 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 TBC1D3Q8IZP1 549 aaPredicted RBP19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 ATP11CQ8NB49 1132 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 PIP4K2CQ8TBX8 421 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 RHBDD1Q8TEB9 315 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 ADAMTS14Q8WXS8 1223 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 PSMB7Q99436 277 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 ZYG11BQ9C0D3 744 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 NAT10Q9H0A0 1025 aaKnown RBP19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 MPP6Q9NZW5 540 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 VPS51Q9UID3 782 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 PLXNA2O75051 1894 aa19.54■□□□□ 0.72
CCDC28A-203ENST00000617445 PLRG1O43660 514 aaKnown RBP19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 SRGAP2O75044 1071 aa19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 TOP3BO95985 862 aaKnown RBP19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 CALB1P05937 261 aa19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 CCDC172P0C7W6 258 aa19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 FTH1P19P0C7X4 201 aa19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 SPINK2P20155 84 aa19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 ETFBP38117 255 aa19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 GRK6P43250 576 aa19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 NUMBP49757 651 aa19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 INAVAQ3KP66 663 aa19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 RETSATQ6NUM9 610 aa19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 Q6ZVU0 165 aa19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 STRADAQ7RTN6 431 aa19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 TFAP2DQ7Z6R9 452 aa19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 KDF1Q8NAX2 398 aaPredicted RBP19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 TMIEQ8NEW7 156 aa19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 BAHD1Q8TBE0 780 aaPredicted RBP19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 RXFP2Q8WXD0 754 aa19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 OSBPL2Q9H1P3 480 aa19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 AASDHPPTQ9NRN7 309 aa19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 SARDHQ9UL12 918 aa19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 DMTF1Q9Y222 760 aa19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 SNX10Q9Y5X0 201 aa19.53■□□□□ 0.72
CCDC28A-203ENST00000617445 C2CD4BA6NLJ0 364 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 YKT6O15498 198 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 MT-CO1P00395 513 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms