RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 TMEM121BQ9BXQ6 578 aaPredicted RBP18.21■□□□□ 0.51
HDDC3-201ENST00000330334 MSRB2Q9Y3D2 182 aa18.21■□□□□ 0.51
HDDC3-201ENST00000330334 TMEM8BA6NDV4 472 aa18.2■□□□□ 0.5
HDDC3-201ENST00000330334 FAM47DPA6NHR8 397 aa18.2■□□□□ 0.5
HDDC3-201ENST00000330334 LGALS16A8MUM7 142 aa18.2■□□□□ 0.5
HDDC3-201ENST00000330334 E9PAM4 449 aa18.2■□□□□ 0.5
HDDC3-201ENST00000330334 GOLGA8SH3BPF8 625 aa18.2■□□□□ 0.5
HDDC3-201ENST00000330334 EPHB6O15197 1021 aa18.2■□□□□ 0.5
HDDC3-201ENST00000330334 LATO43561 262 aa18.2■□□□□ 0.5
HDDC3-201ENST00000330334 MBD3O95983 291 aa18.2■□□□□ 0.5
HDDC3-201ENST00000330334 RHOCP08134 193 aa18.2■□□□□ 0.5
HDDC3-201ENST00000330334 UNGP13051 313 aaPredicted RBP18.2■□□□□ 0.5
HDDC3-201ENST00000330334 NUDT1P36639 197 aa18.2■□□□□ 0.5
HDDC3-201ENST00000330334 GSCP56915 257 aaPredicted RBP18.2■□□□□ 0.5
HDDC3-201ENST00000330334 NRG1Q02297 640 aaPredicted RBP18.2■□□□□ 0.5
HDDC3-201ENST00000330334 ACCSLQ4AC99 568 aa18.2■□□□□ 0.5
HDDC3-201ENST00000330334 UNQ6494/PRO21346Q6UXR6 183 aa18.2■□□□□ 0.5
HDDC3-201ENST00000330334 DCAF4L2Q8NA75 395 aa18.2■□□□□ 0.5
HDDC3-201ENST00000330334 BAHD1Q8TBE0 780 aaPredicted RBP18.2■□□□□ 0.5
HDDC3-201ENST00000330334 GATA6Q92908 595 aa18.2■□□□□ 0.5
HDDC3-201ENST00000330334 CFAP57Q96MR6 1250 aa18.2■□□□□ 0.5
HDDC3-201ENST00000330334 ERGIC2Q96RQ1 377 aa18.2■□□□□ 0.5
HDDC3-201ENST00000330334 PSMB7Q99436 277 aa18.2■□□□□ 0.5
HDDC3-201ENST00000330334 CDC6Q99741 560 aa18.2■□□□□ 0.5
HDDC3-201ENST00000330334 ACE2Q9BYF1 805 aaPredicted RBP18.2■□□□□ 0.5
HDDC3-201ENST00000330334 EBF2Q9HAK2 575 aa18.2■□□□□ 0.5
HDDC3-201ENST00000330334 NLRC4Q9NPP4 1024 aa18.2■□□□□ 0.5
HDDC3-201ENST00000330334 PPARGC1AQ9UBK2 798 aaKnown RBP18.2■□□□□ 0.5
HDDC3-201ENST00000330334 ZNF212Q9UDV6 495 aa18.2■□□□□ 0.5
HDDC3-201ENST00000330334 CXorf51AA0A1B0GTR3 108 aa18.19■□□□□ 0.5
HDDC3-201ENST00000330334 ILVBLA1L0T0 632 aa18.19■□□□□ 0.5
HDDC3-201ENST00000330334 C1QTNF3-AMACRE9PGA6 284 aa18.19■□□□□ 0.5
HDDC3-201ENST00000330334 HYAL3O43820 417 aaPredicted RBP18.19■□□□□ 0.5
HDDC3-201ENST00000330334 SRCP12931 536 aa18.19■□□□□ 0.5
HDDC3-201ENST00000330334 SPINK2P20155 84 aa18.19■□□□□ 0.5
HDDC3-201ENST00000330334 SLC20A2Q08357 652 aa18.19■□□□□ 0.5
HDDC3-201ENST00000330334 SYCP1Q15431 976 aa18.19■□□□□ 0.5
HDDC3-201ENST00000330334 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP18.19■□□□□ 0.5
HDDC3-201ENST00000330334 ADAT2Q7Z6V5 191 aaKnown RBP18.19■□□□□ 0.5
HDDC3-201ENST00000330334 SETD7Q8WTS6 366 aaKnown RBP18.19■□□□□ 0.5
HDDC3-201ENST00000330334 ADAMTS14Q8WXS8 1223 aa18.19■□□□□ 0.5
HDDC3-201ENST00000330334 VPS51Q9UID3 782 aa18.19■□□□□ 0.5
HDDC3-201ENST00000330334 SARDHQ9UL12 918 aa18.19■□□□□ 0.5
HDDC3-201ENST00000330334 FARP1Q9Y4F1 1045 aaPredicted RBP18.19■□□□□ 0.5
HDDC3-201ENST00000330334 SPEGQ15772 3267 aa18.19■□□□□ 0.5
HDDC3-201ENST00000330334 TBC1D3DA0A087WVF3 549 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 TBC1D3IA0A087WXS9 549 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 TBC1D3EA0A087X179 549 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 TBC1D3KA0A087X1G2 549 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 TBC1D3FA6NER0 549 aaPredicted RBP18.18■□□□□ 0.5
HDDC3-201ENST00000330334 TBC1D3LB9A6J9 549 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 PLRG1O43660 514 aaKnown RBP18.18■□□□□ 0.5
HDDC3-201ENST00000330334 MT-CO1P00395 513 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 TBC1D3HP0C7X1 549 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 OR1E1P30953 314 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 ADRA1BP35368 520 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 PTPN9P43378 593 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 CCT8P50990 548 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 C21orf59P57076 290 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 CCDC15Q0P6D6 951 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 PTP4A2Q12974 167 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 NCAPHQ15003 741 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 CCDC14Q49A88 953 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 KCNT1Q5JUK3 1230 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 CCDC183Q5T5S1 534 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 TBC1D3GQ6DHY5 549 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 TBC1D3CQ6IPX1 549 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 Q6ZVU0 165 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 STRADAQ7RTN6 431 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 APTXQ7Z2E3 356 aaKnown RBP18.18■□□□□ 0.5
HDDC3-201ENST00000330334 FAM131BQ86XD5 332 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 TBC1D3Q8IZP1 549 aaPredicted RBP18.18■□□□□ 0.5
HDDC3-201ENST00000330334 ATP11CQ8NB49 1132 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 TMIEQ8NEW7 156 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 NEK11Q8NG66 645 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 CENPIQ92674 756 aaPredicted RBP18.18■□□□□ 0.5
HDDC3-201ENST00000330334 CCDC114Q96M63 670 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 ZYG11BQ9C0D3 744 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 OSBPL2Q9H1P3 480 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 METTL5Q9NRN9 209 aaKnown RBP18.18■□□□□ 0.5
HDDC3-201ENST00000330334 TMPRSS4Q9NRS4 437 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 MPP6Q9NZW5 540 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 APOBEC2Q9Y235 224 aaKnown RBP18.18■□□□□ 0.5
HDDC3-201ENST00000330334 SNX10Q9Y5X0 201 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 AKAP13Q12802 2813 aa18.18■□□□□ 0.5
HDDC3-201ENST00000330334 A0A0D9SEW6 157 aa18.17■□□□□ 0.5
HDDC3-201ENST00000330334 A0A1W2PR77 199 aa18.17■□□□□ 0.5
HDDC3-201ENST00000330334 C2CD4BA6NLJ0 364 aa18.17■□□□□ 0.5
HDDC3-201ENST00000330334 C1QTNF9BB2RNN3 333 aa18.17■□□□□ 0.5
HDDC3-201ENST00000330334 SNAP91O60641 907 aa18.17■□□□□ 0.5
HDDC3-201ENST00000330334 SRGAP2O75044 1071 aa18.17■□□□□ 0.5
HDDC3-201ENST00000330334 DKK1O94907 266 aa18.17■□□□□ 0.5
HDDC3-201ENST00000330334 FTH1P19P0C7X4 201 aa18.17■□□□□ 0.5
HDDC3-201ENST00000330334 C1QTNF9P0C862 333 aa18.17■□□□□ 0.5
HDDC3-201ENST00000330334 CDK11BP21127 795 aaKnown RBP18.17■□□□□ 0.5
HDDC3-201ENST00000330334 CD38P28907 300 aa18.17■□□□□ 0.5
HDDC3-201ENST00000330334 SDC4P31431 198 aa18.17■□□□□ 0.5
HDDC3-201ENST00000330334 NUMBP49757 651 aa18.17■□□□□ 0.5
HDDC3-201ENST00000330334 UBXN1Q04323 297 aa18.17■□□□□ 0.5
HDDC3-201ENST00000330334 ARL13BQ3SXY8 428 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms