RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 IL9RQ01113 521 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 ANO4Q32M45 955 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 TPGS2Q68CL5 300 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 UNC5AQ6ZN44 842 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 SPATA31D4Q6ZUB0 917 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 CTAGE3PQ8IX95 158 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 AGGF1Q8N302 714 aaeCLIP17.22■□□□□ 0.35
LDLR-206ENST00000557958 MGARPQ8TDB4 240 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 SP7Q8TDD2 431 aaPredicted RBP17.22■□□□□ 0.35
LDLR-206ENST00000557958 CDKL2Q92772 493 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 TEKT5Q96M29 485 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 CYP4F11Q9HBI6 524 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 ENTPD7Q9NQZ7 604 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 AFF4Q9UHB7 1163 aaKnown RBP17.22■□□□□ 0.35
LDLR-206ENST00000557958 MAGED2Q9UNF1 606 aaPredicted RBP17.22■□□□□ 0.35
LDLR-206ENST00000557958 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.22■□□□□ 0.35
LDLR-206ENST00000557958 ARHGAP42A6NI28 874 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 NEBLO76041 1014 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 ARHGEF15O94989 841 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 CA3P07451 260 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 ZDHHC11BP0C7U3 371 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 CREB1P16220 341 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 RHOQP17081 205 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 IFNAR2P48551 515 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 RASIP1Q5U651 963 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 GKAP1Q5VSY0 366 aaPredicted RBP17.22■□□□□ 0.35
LDLR-206ENST00000557958 FOXR1Q6PIV2 292 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 ZNF276Q8N554 614 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 ZNF461Q8TAF7 563 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 AGAP3Q96P47 875 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 ZYG11BQ9C0D3 744 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 LRRC40Q9H9A6 602 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 CERS4Q9HA82 394 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 BFARQ9NZS9 450 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 F5H423 210 aaPredicted RBP17.21■□□□□ 0.35
LDLR-206ENST00000557958 ZBTB24O43167 697 aaPredicted RBP17.21■□□□□ 0.35
LDLR-206ENST00000557958 ZWINTO95229 277 aa17.21■□□□□ 0.35
LDLR-206ENST00000557958 MT-ND3P03897 115 aa17.21■□□□□ 0.35
LDLR-206ENST00000557958 CCNB1P14635 433 aa17.21■□□□□ 0.35
LDLR-206ENST00000557958 CA4P22748 312 aa17.21■□□□□ 0.35
LDLR-206ENST00000557958 ELF1P32519 619 aa17.21■□□□□ 0.35
LDLR-206ENST00000557958 CORO7P57737 925 aa17.21■□□□□ 0.35
LDLR-206ENST00000557958 PIK3R6Q5UE93 754 aa17.21■□□□□ 0.35
LDLR-206ENST00000557958 TTC39BQ5VTQ0 682 aaPredicted RBP17.21■□□□□ 0.35
LDLR-206ENST00000557958 PLPP4Q5VZY2 271 aa17.21■□□□□ 0.35
LDLR-206ENST00000557958 STEAP4Q687X5 459 aa17.21■□□□□ 0.35
LDLR-206ENST00000557958 NAPEPLDQ6IQ20 393 aa17.21■□□□□ 0.35
LDLR-206ENST00000557958 LINC00523Q86TU6 105 aa17.21■□□□□ 0.35
LDLR-206ENST00000557958 MIB1Q86YT6 1006 aa17.21■□□□□ 0.35
LDLR-206ENST00000557958 TCF25Q9BQ70 676 aa17.21■□□□□ 0.35
LDLR-206ENST00000557958 ZBP1Q9H171 429 aa17.21■□□□□ 0.35
LDLR-206ENST00000557958 STK39Q9UEW8 545 aa17.21■□□□□ 0.35
LDLR-206ENST00000557958 GGA2Q9UJY4 613 aa17.21■□□□□ 0.35
LDLR-206ENST00000557958 AAR2Q9Y312 384 aaKnown RBP17.21■□□□□ 0.35
LDLR-206ENST00000557958 HBS1LQ9Y450 684 aaKnown RBP17.21■□□□□ 0.35
LDLR-206ENST00000557958 SLC12A8A0AV02 714 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 PRRG1O14668 218 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 MATN3O15232 486 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 TEX28O15482 410 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 TLR5O60602 858 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 KRT38O76015 456 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 SEC24AO95486 1093 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 JCHAINP01591 159 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 VIMP08670 466 aaKnown RBP17.2■□□□□ 0.34
LDLR-206ENST00000557958 KRT4P19013 534 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 GRIA1P42261 906 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 MAGEA9P43362 315 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 SERPINB9P50453 376 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 NDST2P52849 883 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 SESN2P58004 480 aaPredicted RBP17.2■□□□□ 0.34
LDLR-206ENST00000557958 ERVFC1P60507 584 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 ZBTB17Q13105 803 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 NAB1Q13506 487 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 SPARCL1Q14515 664 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 SEPT7Q16181 437 aaKnown RBP17.2■□□□□ 0.34
LDLR-206ENST00000557958 MS4A13Q5J8X5 152 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 FAM182AQ5T1J6 154 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 ARHGAP12Q8IWW6 846 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 C10orf67Q8IYJ2 551 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 PPM1NQ8N819 430 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 DEPDC1BQ8WUY9 529 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 POF1BQ8WVV4 589 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 CKAP2Q8WWK9 683 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 TTC17Q96AE7 1141 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 MTBPQ96DY7 904 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 ZNF317Q96PQ6 595 aaPredicted RBP17.2■□□□□ 0.34
LDLR-206ENST00000557958 FOXO6A8MYZ6 492 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 ANXA9O76027 345 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 IGLV3-27P01718 113 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 POLBP06746 335 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 CSH1P0DML2 217 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 CSH2P0DML3 217 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 CTSAP10619 480 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 ATF6P18850 670 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 NFKB1P19838 968 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 LRRC14Q15048 493 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 AFMIDQ63HM1 303 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 ZNF449Q6P9G9 518 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 C4orf33Q8N1A6 199 aa17.2■□□□□ 0.34
LDLR-206ENST00000557958 UMODL1-AS1Q8N2C9 162 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms