RNA–Protein interactions for RNA: snR40

snR40, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR40, Length 97 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR40	snR40	MLF3	P32047	452 aa		0.29	□□□□□ -2.36
snR40	snR40	GLN1	P32288	370 aa	Known RBP	0.29	□□□□□ -2.36
snR40	snR40	HPC2	Q01448	625 aa		0.29	□□□□□ -2.36
snR40	snR40	POL5	P39985	1022 aa	Known RBP	0.28	□□□□□ -2.36
snR40	snR40	YER156C	P40093	338 aa	Known RBP	0.28	□□□□□ -2.36
snR40	snR40	COQ11	Q05892	277 aa		0.28	□□□□□ -2.36
snR40	snR40	TRE1	Q08919	783 aa		0.28	□□□□□ -2.36
snR40	snR40	HAL5	P38970	855 aa	Known RBP	0.27	□□□□□ -2.37
snR40	snR40	PEX7	P39108	375 aa		0.27	□□□□□ -2.37
snR40	snR40	MTO1	P53070	669 aa		0.27	□□□□□ -2.37
snR40	snR40	KIP3	P53086	805 aa	Known RBP	0.27	□□□□□ -2.37
snR40	snR40	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	0.27	□□□□□ -2.37	not detected
snR40	snR40	PRO1	P32264	428 aa		0.26	□□□□□ -2.37
snR40	snR40	MEP2	P41948	499 aa		0.26	□□□□□ -2.37
snR40	snR40	APL6	P46682	809 aa		0.26	□□□□□ -2.37
snR40	snR40	SPT20	P50875	604 aa		0.26	□□□□□ -2.37
snR40	snR40	STE20	Q03497	939 aa	Known RBP	0.26	□□□□□ -2.37
snR40	snR40	ELG1	Q12050	791 aa		0.26	□□□□□ -2.37
snR40	snR40	MSS4	P38994	779 aa		0.25	□□□□□ -2.37
snR40	snR40	GAT1	P43574	510 aa		0.25	□□□□□ -2.37
snR40	snR40	PHO23	P50947	330 aa		0.25	□□□□□ -2.37
snR40	snR40	MCM1	P11746	286 aa		0.24	□□□□□ -2.37
snR40	snR40	STE11	P23561	717 aa		0.24	□□□□□ -2.37
snR40	snR40	DEF1	P35732	738 aa	Known RBP	0.24	□□□□□ -2.37
snR40	snR40	DSF2	P38213	736 aa		0.24	□□□□□ -2.37
snR40	snR40	LEM3	P42838	414 aa		0.24	□□□□□ -2.37
snR40	snR40	YNL162W-A	Q3E7A8	72 aa		0.24	□□□□□ -2.37
snR40	snR40	GPT2	P36148	743 aa		0.23	□□□□□ -2.37
snR40	snR40	IMO32	P53219	342 aa		0.23	□□□□□ -2.37
snR40	snR40	TMN2	Q04562	672 aa		0.23	□□□□□ -2.37
snR40	snR40	Q0182	Q9ZZW1	134 aa		0.23	□□□□□ -2.37
snR40	snR40	PMA1	P05030	918 aa	Known RBP	0.22	□□□□□ -2.37
snR40	snR40	PTC7	P38797	343 aa		0.22	□□□□□ -2.37
snR40	snR40	MCM6	P53091	1017 aa	Known RBP	0.22	□□□□□ -2.37
snR40	snR40	GUP1	P53154	560 aa		0.22	□□□□□ -2.37
snR40	snR40	GCN5	Q03330	439 aa		0.22	□□□□□ -2.37
snR40	snR40	HDA3	Q06623	655 aa		0.22	□□□□□ -2.37
snR40	snR40	IRC10	Q08118	586 aa		0.22	□□□□□ -2.37
snR40	snR40	RPC31	P17890	251 aa		0.21	□□□□□ -2.38
snR40	snR40	ARG8	P18544	423 aa		0.21	□□□□□ -2.38
snR40	snR40	RSP5	P39940	809 aa	Known RBP	0.21	□□□□□ -2.38
snR40	snR40	VPS70	P47161	811 aa		0.21	□□□□□ -2.38
snR40	snR40	ITC1	P53125	1264 aa		0.21	□□□□□ -2.38
snR40	snR40	SPO71	Q03868	1245 aa		0.21	□□□□□ -2.38
snR40	snR40	SWI5	P08153	709 aa		0.2	□□□□□ -2.38
snR40	snR40	KAP122	P32767	1081 aa		0.2	□□□□□ -2.38
snR40	snR40	DOM34	P33309	386 aa		0.2	□□□□□ -2.38
snR40	snR40	LST4	P34239	828 aa		0.2	□□□□□ -2.38
snR40	snR40	MRX12	P47084	519 aa		0.2	□□□□□ -2.38
snR40	snR40	TFB3	Q03290	321 aa		0.2	□□□□□ -2.38
snR40	snR40	YOR223W	Q12015	292 aa		0.2	□□□□□ -2.38
snR40	snR40	YVC1	Q12324	675 aa		0.2	□□□□□ -2.38
snR40	snR40	MEF2	P39677	819 aa		0.19	□□□□□ -2.38
snR40	snR40	GTS1	P40956	396 aa		0.19	□□□□□ -2.38
snR40	snR40	PKH3	Q03306	898 aa	Predicted RBP	0.19	□□□□□ -2.38
snR40	snR40	TMA10	Q06177	86 aa		0.19	□□□□□ -2.38
snR40	snR40	RPS4A	P0CX35	261 aa	Known RBP	0.18	□□□□□ -2.38
snR40	snR40	RPS4B	P0CX36	261 aa	Known RBP	0.18	□□□□□ -2.38
snR40	snR40	YJL181W	P46987	611 aa		0.18	□□□□□ -2.38
snR40	snR40	RSC2	Q06488	889 aa		0.18	□□□□□ -2.38
snR40	snR40	UTP4	Q06679	776 aa	Known RBP	0.18	□□□□□ -2.38
snR40	snR40	BNR1	P40450	1375 aa		0.18	□□□□□ -2.38
snR40	snR40	LAM1	P38851	1228 aa		0.17	□□□□□ -2.38
snR40	snR40	INP51	P40559	946 aa	Known RBP	0.17	□□□□□ -2.38
snR40	snR40	EAR1	Q03212	550 aa		0.17	□□□□□ -2.38
snR40	snR40	THI7	Q05998	598 aa		0.17	□□□□□ -2.38
snR40	snR40	SOG2	Q08817	791 aa		0.17	□□□□□ -2.38
snR40	snR40	PBS2	P08018	668 aa		0.16	□□□□□ -2.38
snR40	snR40	DCG1	P32460	244 aa		0.16	□□□□□ -2.38
snR40	snR40	GPB2	P39717	880 aa		0.16	□□□□□ -2.38
snR40	snR40	FOL2	P51601	243 aa	Known RBP	0.16	□□□□□ -2.38
snR40	snR40	ALT1	P52893	592 aa		0.16	□□□□□ -2.38
snR40	snR40	PUS2	P53167	370 aa		0.16	□□□□□ -2.38
snR40	snR40	FAR11	P53917	953 aa		0.16	□□□□□ -2.38
snR40	snR40	CIR2	Q08822	631 aa		0.16	□□□□□ -2.38
snR40	snR40	MAM3	Q12296	706 aa		0.16	□□□□□ -2.38
snR40	snR40	TFA2	P36145	328 aa		0.15	□□□□□ -2.39
snR40	snR40	LDH1	P38139	375 aa		0.15	□□□□□ -2.39
snR40	snR40	IES2	P40154	320 aa		0.15	□□□□□ -2.39
snR40	snR40	NUP42	P49686	430 aa	Known RBP	0.15	□□□□□ -2.39
snR40	snR40	PPT1	P53043	513 aa		0.15	□□□□□ -2.39
snR40	snR40	BIO5	P53744	561 aa	Known RBP	0.15	□□□□□ -2.39
snR40	snR40	MPS1	P54199	764 aa		0.15	□□□□□ -2.39
snR40	snR40	SGD1	Q06132	899 aa		0.15	□□□□□ -2.39
snR40	snR40	MCH5	Q08777	521 aa		0.15	□□□□□ -2.39
snR40	snR40	PUF4	P25339	888 aa	Known RBP RIP-Chip data	0.14	□□□□□ -2.39	not detected
snR40	snR40	BOI1	P38041	980 aa	Known RBP	0.14	□□□□□ -2.39
snR40	snR40	CCT4	P39078	528 aa	Known RBP	0.14	□□□□□ -2.39
snR40	snR40	DOT1	Q04089	582 aa	Known RBP	0.14	□□□□□ -2.39
snR40	snR40	DUS4	Q06063	367 aa		0.14	□□□□□ -2.39
snR40	snR40	MAK16	P10962	306 aa	Predicted RBP	0.13	□□□□□ -2.39
snR40	snR40	CDC20	P26309	610 aa		0.13	□□□□□ -2.39
snR40	snR40	MTH1	P35198	433 aa		0.13	□□□□□ -2.39
snR40	snR40	LEO1	P38439	464 aa		0.13	□□□□□ -2.39
snR40	snR40	RGT2	Q12300	763 aa		0.13	□□□□□ -2.39
snR40	snR40	EMP47	P43555	445 aa		0.12	□□□□□ -2.39
snR40	snR40	YOR352W	Q08816	343 aa		0.12	□□□□□ -2.39
snR40	snR40	TUB1	P09733	447 aa	Known RBP	0.11	□□□□□ -2.39
snR40	snR40	RPS6A	P0CX37	236 aa	Known RBP	0.11	□□□□□ -2.39
snR40	snR40	RPS6B	P0CX38	236 aa	Predicted RBP	0.11	□□□□□ -2.39

Retrieved 100 of 5,963 RNA–protein pairs in 42.1 ms