RNA–Protein interactions for RNA: YNL197C

WHI3, Transcript of RNA binding protein that sequesters CLN3 mRNA in cytoplasmic foci, yeast

Gene WHI3, Length 1,986 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
WHI3	YNL197C	YPL109C	Q02981	657 aa		4.92	□□□□□ -1.62
WHI3	YNL197C	MSH6	Q03834	1242 aa		4.92	□□□□□ -1.62
WHI3	YNL197C	CLN2	P20438	545 aa		4.91	□□□□□ -1.62
WHI3	YNL197C	MCM5	P29496	775 aa	Known RBP	4.91	□□□□□ -1.62
WHI3	YNL197C	DUT1	P33317	147 aa		4.91	□□□□□ -1.62
WHI3	YNL197C	AIM46	P38885	310 aa		4.91	□□□□□ -1.62
WHI3	YNL197C	TAT2	P38967	592 aa		4.91	□□□□□ -1.62
WHI3	YNL197C	NUP85	P46673	744 aa		4.91	□□□□□ -1.62
WHI3	YNL197C	RGP1	P16664	663 aa		4.91	□□□□□ -1.62
WHI3	YNL197C	PYC2	P32327	1180 aa	Known RBP	4.91	□□□□□ -1.62
WHI3	YNL197C	PIC2	P40035	300 aa		4.91	□□□□□ -1.62
WHI3	YNL197C	FPR4	Q06205	392 aa	Predicted RBP	4.91	□□□□□ -1.62
WHI3	YNL197C	SAP155	P43612	1002 aa		4.9	□□□□□ -1.63
WHI3	YNL197C	NUT1	P53114	1132 aa		4.9	□□□□□ -1.63
WHI3	YNL197C	YNR040W	P53736	256 aa		4.9	□□□□□ -1.63
WHI3	YNL197C	ULP1	Q02724	621 aa		4.9	□□□□□ -1.63
WHI3	YNL197C	MCD1	Q12158	566 aa		4.9	□□□□□ -1.63
WHI3	YNL197C	APM2	P38700	605 aa		4.89	□□□□□ -1.63
WHI3	YNL197C	UBP15	P50101	1230 aa		4.89	□□□□□ -1.63
WHI3	YNL197C	TCB1	Q12466	1186 aa		4.89	□□□□□ -1.63
WHI3	YNL197C	SRF1	Q12516	437 aa		4.89	□□□□□ -1.63
WHI3	YNL197C	CDC34	P14682	295 aa		4.89	□□□□□ -1.63
WHI3	YNL197C	MRPS18	P42847	217 aa		4.89	□□□□□ -1.63
WHI3	YNL197C	MON1	P53129	644 aa		4.89	□□□□□ -1.63
WHI3	YNL197C	LSC2	P53312	427 aa		4.89	□□□□□ -1.63
WHI3	YNL197C	CDC19	P00549	500 aa	Known RBP	4.88	□□□□□ -1.63
WHI3	YNL197C	FAA4	P47912	694 aa	Known RBP	4.88	□□□□□ -1.63
WHI3	YNL197C	ADI1	Q03677	179 aa		4.88	□□□□□ -1.63
WHI3	YNL197C	YBR287W	P38355	427 aa		4.87	□□□□□ -1.63
WHI3	YNL197C	YGR053C	P53234	283 aa		4.87	□□□□□ -1.63
WHI3	YNL197C	DOS2	P54858	310 aa		4.87	□□□□□ -1.63
WHI3	YNL197C	SPC42	P36094	363 aa		4.87	□□□□□ -1.63
WHI3	YNL197C	RIM11	P38615	370 aa		4.87	□□□□□ -1.63
WHI3	YNL197C	YER156C	P40093	338 aa	Known RBP	4.87	□□□□□ -1.63
WHI3	YNL197C	GNP1	P48813	663 aa		4.87	□□□□□ -1.63
WHI3	YNL197C	IOC4	Q04213	475 aa		4.87	□□□□□ -1.63
WHI3	YNL197C	CMR1	Q12510	522 aa	Known RBP	4.87	□□□□□ -1.63
WHI3	YNL197C	RVS167	P39743	482 aa	Known RBP	4.86	□□□□□ -1.63
WHI3	YNL197C	GCR1	P07261	785 aa		4.85	□□□□□ -1.63
WHI3	YNL197C	HEM13	P11353	328 aa	Known RBP	4.85	□□□□□ -1.63
WHI3	YNL197C	IDI1	P15496	288 aa		4.85	□□□□□ -1.63
WHI3	YNL197C	KAR2	P16474	682 aa	Known RBP	4.85	□□□□□ -1.63
WHI3	YNL197C	PRP5	P21372	849 aa	Predicted RBP	4.85	□□□□□ -1.63
WHI3	YNL197C	YJL049W	P47048	450 aa		4.85	□□□□□ -1.63
WHI3	YNL197C	NAM8	Q00539	523 aa	Known RBP	4.85	□□□□□ -1.63
WHI3	YNL197C	GDE1	Q02979	1223 aa		4.85	□□□□□ -1.63
WHI3	YNL197C	NSE3	Q05541	303 aa		4.85	□□□□□ -1.63
WHI3	YNL197C	HVG1	P0CE11	249 aa		4.85	□□□□□ -1.63
WHI3	YNL197C	MRPL16	P38064	232 aa		4.85	□□□□□ -1.63
WHI3	YNL197C	BUD6	P41697	788 aa		4.85	□□□□□ -1.63
WHI3	YNL197C	YAF9	P53930	226 aa		4.85	□□□□□ -1.63
WHI3	YNL197C	WRS1	Q12109	432 aa	Known RBP	4.85	□□□□□ -1.63
WHI3	YNL197C	CIT2	P08679	460 aa		4.84	□□□□□ -1.63
WHI3	YNL197C	YKL069W	P36088	180 aa		4.84	□□□□□ -1.63
WHI3	YNL197C	MSC7	P38694	644 aa		4.84	□□□□□ -1.63
WHI3	YNL197C	RPN4	Q03465	531 aa		4.84	□□□□□ -1.63
WHI3	YNL197C	NPR1	P22211	790 aa		4.84	□□□□□ -1.64
WHI3	YNL197C	GRX1	P25373	110 aa	Known RBP	4.84	□□□□□ -1.64
WHI3	YNL197C	PPT1	P53043	513 aa		4.84	□□□□□ -1.64
WHI3	YNL197C	EEB1	Q02891	456 aa		4.84	□□□□□ -1.64
WHI3	YNL197C	OPT2	Q06593	877 aa		4.84	□□□□□ -1.64
WHI3	YNL197C	PMT7	Q06644	662 aa		4.84	□□□□□ -1.64
WHI3	YNL197C	BDF2	Q07442	638 aa		4.84	□□□□□ -1.64
WHI3	YNL197C	FUS1	P11710	512 aa		4.83	□□□□□ -1.64
WHI3	YNL197C	NCL1	P38205	684 aa	Known RBP	4.83	□□□□□ -1.64
WHI3	YNL197C	AMN1	P38285	549 aa	Predicted RBP	4.83	□□□□□ -1.64
WHI3	YNL197C	OSH7	P38755	437 aa		4.83	□□□□□ -1.64
WHI3	YNL197C	NMD2	P38798	1089 aa	Known RBP	4.83	□□□□□ -1.64
WHI3	YNL197C	RNH70	P53331	553 aa		4.83	□□□□□ -1.64
WHI3	YNL197C	CWC24	P53769	259 aa		4.83	□□□□□ -1.64
WHI3	YNL197C	UBP2	Q01476	1272 aa		4.83	□□□□□ -1.64
WHI3	YNL197C	NOG1	Q02892	647 aa	Known RBP	4.83	□□□□□ -1.64
WHI3	YNL197C	SEC23	P15303	768 aa	Known RBP	4.82	□□□□□ -1.64
WHI3	YNL197C	SRP40	P32583	406 aa	Predicted RBP	4.82	□□□□□ -1.64
WHI3	YNL197C	TFA2	P36145	328 aa		4.82	□□□□□ -1.64
WHI3	YNL197C	BRN1	P38170	754 aa		4.82	□□□□□ -1.64
WHI3	YNL197C	HXT13	P39924	564 aa		4.82	□□□□□ -1.64
WHI3	YNL197C	HXT17	P53631	564 aa		4.82	□□□□□ -1.64
WHI3	YNL197C	HXT15	P54854	567 aa		4.82	□□□□□ -1.64
WHI3	YNL197C	RTT10	Q08924	1013 aa		4.82	□□□□□ -1.64
WHI3	YNL197C	TY1A-BL	Q12266	440 aa		4.82	□□□□□ -1.64
WHI3	YNL197C	GLO4	Q12320	285 aa		4.82	□□□□□ -1.64
WHI3	YNL197C	ECM2	P38241	364 aa	Known RBP	4.82	□□□□□ -1.64
WHI3	YNL197C	XKS1	P42826	600 aa		4.82	□□□□□ -1.64
WHI3	YNL197C	YGL140C	P53120	1219 aa		4.82	□□□□□ -1.64
WHI3	YNL197C	OPI10	Q08202	246 aa		4.82	□□□□□ -1.64
WHI3	YNL197C	MRP10	O75012	95 aa		4.81	□□□□□ -1.64
WHI3	YNL197C	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.81	□□□□□ -1.64	not detected
WHI3	YNL197C	PRI2	P20457	528 aa		4.81	□□□□□ -1.64
WHI3	YNL197C	YKL091C	P33324	310 aa	Known RBP	4.81	□□□□□ -1.64
WHI3	YNL197C	RDH54	P38086	958 aa		4.81	□□□□□ -1.64
WHI3	YNL197C	SPF1	P39986	1215 aa	Known RBP	4.81	□□□□□ -1.64
WHI3	YNL197C	HDA2	Q06629	674 aa		4.81	□□□□□ -1.64
WHI3	YNL197C	PEX28	P38848	579 aa		4.8	□□□□□ -1.64
WHI3	YNL197C	INP51	P40559	946 aa	Known RBP	4.8	□□□□□ -1.64
WHI3	YNL197C	MRL1	Q06815	381 aa		4.8	□□□□□ -1.64
WHI3	YNL197C	PPM2	Q08282	695 aa		4.8	□□□□□ -1.64
WHI3	YNL197C	MSH3	P25336	1018 aa		4.8	□□□□□ -1.64
WHI3	YNL197C	GLY1	P37303	387 aa	Known RBP	4.8	□□□□□ -1.64
WHI3	YNL197C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	4.8	□□□□□ -1.64	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 18.3 ms