RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W PSH1Q12161 406 aa7.74□□□□□ -1.17
PRP40YKL012W COBP00163 385 aa7.73□□□□□ -1.17
PRP40YKL012W LEU1P07264 779 aaKnown RBP7.73□□□□□ -1.17
PRP40YKL012W CDC4P07834 779 aa7.73□□□□□ -1.17
PRP40YKL012W XDJ1P39102 459 aa7.73□□□□□ -1.17
PRP40YKL012W FAA4P47912 694 aaKnown RBP7.73□□□□□ -1.17
PRP40YKL012W ULP1Q02724 621 aa7.73□□□□□ -1.17
PRP40YKL012W CDC53Q12018 815 aaKnown RBP7.73□□□□□ -1.17
PRP40YKL012W GRX1P25373 110 aaKnown RBP7.72□□□□□ -1.17
PRP40YKL012W ECM2P38241 364 aaKnown RBP7.72□□□□□ -1.17
PRP40YKL012W TAT2P38967 592 aa7.72□□□□□ -1.17
PRP40YKL012W BUD6P41697 788 aa7.72□□□□□ -1.17
PRP40YKL012W NUT1P53114 1132 aa7.72□□□□□ -1.17
PRP40YKL012W YGR053CP53234 283 aa7.72□□□□□ -1.17
PRP40YKL012W HST3P53687 447 aa7.72□□□□□ -1.17
PRP40YKL012W CUS1Q02554 436 aaPredicted RBP7.72□□□□□ -1.17
PRP40YKL012W MSH6Q03834 1242 aa7.72□□□□□ -1.17
PRP40YKL012W BDF2Q07442 638 aa7.72□□□□□ -1.17
PRP40YKL012W DUT1P33317 147 aa7.71□□□□□ -1.17
PRP40YKL012W ASH1P34233 588 aa7.71□□□□□ -1.17
PRP40YKL012W SKP1P52286 194 aa7.71□□□□□ -1.17
PRP40YKL012W PIC2P40035 300 aa7.71□□□□□ -1.18
PRP40YKL012W YIL165CP40446 119 aa7.71□□□□□ -1.18
PRP40YKL012W MON1P53129 644 aa7.71□□□□□ -1.18
PRP40YKL012W RVS167P39743 482 aaKnown RBP7.7□□□□□ -1.18
PRP40YKL012W YOR131CQ12486 218 aa7.7□□□□□ -1.18
PRP40YKL012W DLD1P32891 587 aa7.69□□□□□ -1.18
PRP40YKL012W DUR3P33413 735 aa7.69□□□□□ -1.18
PRP40YKL012W RRP14P36080 434 aaKnown RBP7.69□□□□□ -1.18
PRP40YKL012W AIR1P40507 360 aaKnown RBP7.69□□□□□ -1.18
PRP40YKL012W PTK2P47116 818 aaKnown RBP7.69□□□□□ -1.18
PRP40YKL012W ALG12P53730 551 aa7.69□□□□□ -1.18
PRP40YKL012W PYC2P32327 1180 aaKnown RBP7.69□□□□□ -1.18
PRP40YKL012W PBP2P38151 413 aaKnown RBP RIP-Chip data7.69□□□□□ -1.18not detected
PRP40YKL012W ITC1P53125 1264 aa7.69□□□□□ -1.18
PRP40YKL012W RTT10Q08924 1013 aa7.69□□□□□ -1.18
PRP40YKL012W SAP155P43612 1002 aa7.68□□□□□ -1.18
PRP40YKL012W OPI10Q08202 246 aa7.68□□□□□ -1.18
PRP40YKL012W RAS1P01119 309 aa7.67□□□□□ -1.18
PRP40YKL012W GCR1P07261 785 aa7.67□□□□□ -1.18
PRP40YKL012W RGP1P16664 663 aa7.67□□□□□ -1.18
PRP40YKL012W APM2P38700 605 aa7.67□□□□□ -1.18
PRP40YKL012W FPR3P38911 411 aaKnown RBP7.67□□□□□ -1.18
PRP40YKL012W SRF1Q12516 437 aa7.67□□□□□ -1.18
PRP40YKL012W PRI2P20457 528 aa7.66□□□□□ -1.18
PRP40YKL012W HUL5P53119 910 aa7.66□□□□□ -1.18
PRP40YKL012W TDA5Q06417 326 aaKnown RBP7.66□□□□□ -1.18
PRP40YKL012W PMT7Q06644 662 aa7.66□□□□□ -1.18
PRP40YKL012W SPF1P39986 1215 aaKnown RBP7.66□□□□□ -1.18
PRP40YKL012W YJR098CP47139 656 aa7.66□□□□□ -1.18
PRP40YKL012W YJR115WP47152 169 aa7.66□□□□□ -1.18
PRP40YKL012W UBP3Q01477 912 aaKnown RBP RIP-Chip data7.65□□□□□ -1.18not detected
PRP40YKL012W NUP85P46673 744 aa7.64□□□□□ -1.19
PRP40YKL012W NAN1Q02931 896 aaKnown RBP7.64□□□□□ -1.19
PRP40YKL012W TMA46Q12000 345 aaKnown RBP7.64□□□□□ -1.19
PRP40YKL012W LSC2P53312 427 aa7.64□□□□□ -1.19
PRP40YKL012W RAD4P14736 754 aa7.63□□□□□ -1.19
PRP40YKL012W SQT1P35184 431 aa7.63□□□□□ -1.19
PRP40YKL012W YKL069WP36088 180 aa7.63□□□□□ -1.19
PRP40YKL012W RIM11P38615 370 aa7.63□□□□□ -1.19
PRP40YKL012W RSM26P47141 266 aa7.63□□□□□ -1.19
PRP40YKL012W UBP15P50101 1230 aa7.63□□□□□ -1.19
PRP40YKL012W YNR040WP53736 256 aa7.63□□□□□ -1.19
PRP40YKL012W MRL1Q06815 381 aa7.63□□□□□ -1.19
PRP40YKL012W FAL1Q12099 399 aaKnown RBP7.63□□□□□ -1.19
PRP40YKL012W XKS1P42826 600 aa7.62□□□□□ -1.19
PRP40YKL012W GNP1P48813 663 aa7.61□□□□□ -1.19
PRP40YKL012W EEB1Q02891 456 aa7.61□□□□□ -1.19
PRP40YKL012W TIM54P47045 478 aa7.61□□□□□ -1.19
PRP40YKL012W NOG1Q02892 647 aaKnown RBP7.61□□□□□ -1.19
PRP40YKL012W PPM2Q08282 695 aa7.61□□□□□ -1.19
PRP40YKL012W CMR1Q12510 522 aaKnown RBP7.61□□□□□ -1.19
PRP40YKL012W CCP1P00431 361 aa7.6□□□□□ -1.19
PRP40YKL012W TAF13P11747 167 aa7.6□□□□□ -1.19
PRP40YKL012W PRP5P21372 849 aaPredicted RBP7.6□□□□□ -1.19
PRP40YKL012W NCL1P38205 684 aaKnown RBP7.6□□□□□ -1.19
PRP40YKL012W PEX28P38848 579 aa7.6□□□□□ -1.19
PRP40YKL012W YER156CP40093 338 aaKnown RBP7.6□□□□□ -1.19
PRP40YKL012W KRE33P53914 1056 aaKnown RBP7.6□□□□□ -1.19
PRP40YKL012W SEC23P15303 768 aaKnown RBP7.59□□□□□ -1.19
PRP40YKL012W NPR1P22211 790 aa7.59□□□□□ -1.19
PRP40YKL012W RAD27P26793 382 aa7.59□□□□□ -1.19
PRP40YKL012W TYW3P53177 273 aa7.59□□□□□ -1.19
PRP40YKL012W TCB1Q12466 1186 aa7.59□□□□□ -1.19
PRP40YKL012W BAS1P22035 811 aa7.59□□□□□ -1.2
PRP40YKL012W YHR020WP38708 688 aaKnown RBP7.59□□□□□ -1.2
PRP40YKL012W YGL140CP53120 1219 aa7.59□□□□□ -1.2
PRP40YKL012W RPP1AP05318 106 aaPredicted RBP7.58□□□□□ -1.2
PRP40YKL012W NUP82P40368 713 aa7.58□□□□□ -1.2
PRP40YKL012W PPT1P53043 513 aa7.58□□□□□ -1.2
PRP40YKL012W POB3Q04636 552 aaKnown RBP7.58□□□□□ -1.2
PRP40YKL012W MET6P05694 767 aaKnown RBP7.57□□□□□ -1.2
PRP40YKL012W FUS1P11710 512 aa7.57□□□□□ -1.2
PRP40YKL012W MRPL16P38064 232 aa7.57□□□□□ -1.2
PRP40YKL012W CHZ1P40019 153 aaPredicted RBP7.57□□□□□ -1.2
PRP40YKL012W PEX13P80667 386 aa7.57□□□□□ -1.2
PRP40YKL012W RSC2Q06488 889 aa7.57□□□□□ -1.2
PRP40YKL012W HDA2Q06629 674 aa7.57□□□□□ -1.2
PRP40YKL012W MSH3P25336 1018 aa7.56□□□□□ -1.2
PRP40YKL012W FLC1Q08967 793 aa7.56□□□□□ -1.2
Retrieved 100 of 5,963 RNA–protein pairs in 33.5 ms