RNA–Protein interactions for RNA: YJR060W

CBF1, Transcript of Basic helix-loop-helix (bHLH) protein, yeastyeast

Gene CBF1, Length 1,056 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CBF1YJR060W UBP2Q01476 1272 aa7.08□□□□□ -1.28
CBF1YJR060W YML083CQ04526 418 aa7.08□□□□□ -1.28
CBF1YJR060W TCB1Q12466 1186 aa7.08□□□□□ -1.28
CBF1YJR060W MHP1P43638 1398 aa7.08□□□□□ -1.28
CBF1YJR060W GAR1P28007 205 aaKnown RBP7.07□□□□□ -1.28
CBF1YJR060W PPH3P32345 308 aa7.07□□□□□ -1.28
CBF1YJR060W ALA1P40825 983 aaKnown RBP7.07□□□□□ -1.28
CBF1YJR060W LCB5Q06147 687 aaKnown RBP7.07□□□□□ -1.28
CBF1YJR060W CYT1P07143 309 aa7.06□□□□□ -1.28
CBF1YJR060W MTR4P47047 1073 aaKnown RBP7.06□□□□□ -1.28
CBF1YJR060W ROM1P53046 1155 aa7.06□□□□□ -1.28
CBF1YJR060W APC1P53886 1748 aa7.06□□□□□ -1.28
CBF1YJR060W GLY1P37303 387 aaKnown RBP7.05□□□□□ -1.28
CBF1YJR060W VAN1P23642 535 aa7.04□□□□□ -1.28
CBF1YJR060W SSN3P39073 555 aa7.04□□□□□ -1.28
CBF1YJR060W POL5P39985 1022 aaKnown RBP7.04□□□□□ -1.28
CBF1YJR060W SCW11P53189 542 aa7.04□□□□□ -1.28
CBF1YJR060W AIM44Q99299 758 aa7.04□□□□□ -1.28
CBF1YJR060W YML133CQ03099 1374 aa7.04□□□□□ -1.28
CBF1YJR060W YLL067CQ07888 1374 aa7.04□□□□□ -1.28
CBF1YJR060W YLL066CQ99208 1374 aa7.04□□□□□ -1.28
CBF1YJR060W GBP2P25555 427 aaKnown RBP RIP-Chip data7.03□□□□□ -1.28not detected
CBF1YJR060W SSF1P38789 453 aaPredicted RBP7.03□□□□□ -1.28
CBF1YJR060W CHZ1P40019 153 aaPredicted RBP7.03□□□□□ -1.28
CBF1YJR060W MSN5P52918 1224 aa7.03□□□□□ -1.28
CBF1YJR060W LEU2P04173 364 aaPredicted RBP7.02□□□□□ -1.29
CBF1YJR060W PRP45P28004 379 aaPredicted RBP7.02□□□□□ -1.29
CBF1YJR060W DAL1P32375 460 aa7.02□□□□□ -1.29
CBF1YJR060W VTC4P47075 721 aa7.02□□□□□ -1.29
CBF1YJR060W HAT1Q12341 374 aa7.02□□□□□ -1.29
CBF1YJR060W EDE1P34216 1381 aa7.01□□□□□ -1.29
CBF1YJR060W RSF2P46974 1380 aa7.01□□□□□ -1.29
CBF1YJR060W AHP1P38013 176 aaKnown RBP7.01□□□□□ -1.29
CBF1YJR060W PRP43P53131 767 aaKnown RBP7.01□□□□□ -1.29
CBF1YJR060W YPQ2Q06328 317 aa7.01□□□□□ -1.29
CBF1YJR060W IMH1Q06704 911 aaKnown RBP7.01□□□□□ -1.29
CBF1YJR060W ENT1Q12518 454 aa7.01□□□□□ -1.29
CBF1YJR060W YRF1-3P0CX14 1859 aa7□□□□□ -1.29
CBF1YJR060W YRF1-7P0CX15 1859 aa7□□□□□ -1.29
CBF1YJR060W YRF1-6P53819 1859 aa7□□□□□ -1.29
CBF1YJR060W PRP5P21372 849 aaPredicted RBP7□□□□□ -1.29
CBF1YJR060W ORC1P54784 914 aaPredicted RBP7□□□□□ -1.29
CBF1YJR060W TY1A-BLQ12266 440 aa7□□□□□ -1.29
CBF1YJR060W TRS33Q99394 268 aa7□□□□□ -1.29
CBF1YJR060W SNF2P22082 1703 aa7□□□□□ -1.29
CBF1YJR060W MCM1P11746 286 aa6.99□□□□□ -1.29
CBF1YJR060W UBP1P25037 809 aa6.99□□□□□ -1.29
CBF1YJR060W OSH7P38755 437 aa6.99□□□□□ -1.29
CBF1YJR060W CWH41P53008 833 aa6.99□□□□□ -1.29
CBF1YJR060W PUF6Q04373 656 aaKnown RBP6.99□□□□□ -1.29
CBF1YJR060W NGR1P32831 672 aaKnown RBP6.98□□□□□ -1.29
CBF1YJR060W JJJ2P46997 583 aa6.98□□□□□ -1.29
CBF1YJR060W SNU71P53207 620 aaKnown RBP6.98□□□□□ -1.29
CBF1YJR060W ROM2P51862 1356 aaKnown RBP6.97□□□□□ -1.29
CBF1YJR060W HEM3P28789 327 aa6.97□□□□□ -1.29
CBF1YJR060W SLA1P32790 1244 aa6.97□□□□□ -1.29
CBF1YJR060W PUN1Q06991 263 aa6.97□□□□□ -1.29
CBF1YJR060W CDC19P00549 500 aaKnown RBP6.96□□□□□ -1.3
CBF1YJR060W IRE1P32361 1115 aa6.96□□□□□ -1.3
CBF1YJR060W TY1A-DR3Q12441 440 aa6.96□□□□□ -1.3
CBF1YJR060W RIM15P43565 1770 aa6.95□□□□□ -1.3
CBF1YJR060W ACO2P39533 789 aa6.95□□□□□ -1.3
CBF1YJR060W CAF120P53836 1060 aa6.95□□□□□ -1.3
CBF1YJR060W SEN54Q02825 467 aaPredicted RBP6.95□□□□□ -1.3
CBF1YJR060W YMR074CQ04773 145 aa6.95□□□□□ -1.3
CBF1YJR060W RPS24AP0CX31 135 aaKnown RBP6.94□□□□□ -1.3
CBF1YJR060W RPS24BP0CX32 135 aaKnown RBP6.94□□□□□ -1.3
CBF1YJR060W SHM1P37292 490 aaPredicted RBP6.94□□□□□ -1.3
CBF1YJR060W UBP15P50101 1230 aa6.94□□□□□ -1.3
CBF1YJR060W CWC15Q03772 175 aaKnown RBP6.94□□□□□ -1.3
CBF1YJR060W SLM3Q12093 417 aa6.94□□□□□ -1.3
CBF1YJR060W SEC3P33332 1336 aaKnown RBP6.94□□□□□ -1.3
CBF1YJR060W SUV3P32580 737 aa6.93□□□□□ -1.3
CBF1YJR060W GRX4P32642 244 aa6.93□□□□□ -1.3
CBF1YJR060W PDS5Q04264 1277 aa6.93□□□□□ -1.3
CBF1YJR060W TAP42Q04372 366 aa6.93□□□□□ -1.3
CBF1YJR060W Q0182Q9ZZW1 134 aa6.93□□□□□ -1.3
CBF1YJR060W SIR4P11978 1358 aa6.93□□□□□ -1.3
CBF1YJR060W SRS2P12954 1174 aa6.92□□□□□ -1.3
CBF1YJR060W YTA6P40328 754 aa6.92□□□□□ -1.3
CBF1YJR060W YIR007WP40566 764 aa6.92□□□□□ -1.3
CBF1YJR060W ROG3P43602 733 aa6.92□□□□□ -1.3
CBF1YJR060W YNL165WP53891 406 aa6.92□□□□□ -1.3
CBF1YJR060W RPS31P05759 152 aaKnown RBP6.91□□□□□ -1.3
CBF1YJR060W RRN6P32786 894 aa6.91□□□□□ -1.3
CBF1YJR060W SCD5P34758 872 aa6.91□□□□□ -1.3
CBF1YJR060W STM1P39015 273 aaKnown RBP6.91□□□□□ -1.3
CBF1YJR060W RGA1P39083 1007 aa6.91□□□□□ -1.3
CBF1YJR060W TY1A-MR1Q04215 440 aa6.91□□□□□ -1.3
CBF1YJR060W AUS1Q08409 1394 aa6.91□□□□□ -1.3
CBF1YJR060W MLF3P32047 452 aa6.9□□□□□ -1.3
CBF1YJR060W ENP1P38333 483 aaKnown RBP6.9□□□□□ -1.3
CBF1YJR060W HXT5P38695 592 aa6.9□□□□□ -1.3
CBF1YJR060W NAM8Q00539 523 aaKnown RBP6.9□□□□□ -1.3
CBF1YJR060W FOX2Q02207 900 aaKnown RBP6.9□□□□□ -1.3
CBF1YJR060W PNP1Q05788 311 aa6.9□□□□□ -1.3
CBF1YJR060W PDC6P26263 563 aaKnown RBP6.89□□□□□ -1.31
CBF1YJR060W TPS3P38426 1054 aaKnown RBP6.89□□□□□ -1.31
CBF1YJR060W YDL176WQ12027 708 aa6.89□□□□□ -1.31
CBF1YJR060W PSH1Q12161 406 aa6.89□□□□□ -1.31
Retrieved 100 of 5,963 RNA–protein pairs in 14.8 ms