RNA–Protein interactions for RNA: YIR017C

MET28, Transcript of bZIP transcriptional activator in the Cbf1p-Met4p-Met28p complex, yeast

Gene MET28, Length 564 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MET28	YIR017C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	11.39	□□□□□ -0.59	not detected
MET28	YIR017C	VHR2	P40041	505 aa		11.39	□□□□□ -0.59
MET28	YIR017C	MSH4	P40965	878 aa	Predicted RBP	11.39	□□□□□ -0.59
MET28	YIR017C	KRI1	P42846	591 aa	Known RBP	11.39	□□□□□ -0.59
MET28	YIR017C	NSG2	P53898	299 aa		11.39	□□□□□ -0.59
MET28	YIR017C	KEL3	Q08979	651 aa	Predicted RBP	11.39	□□□□□ -0.59
MET28	YIR017C	PEA2	P40091	420 aa		11.38	□□□□□ -0.59
MET28	YIR017C	NIT1	P40447	199 aa		11.38	□□□□□ -0.59
MET28	YIR017C	SSA4	P22202	642 aa	Known RBP	11.37	□□□□□ -0.59
MET28	YIR017C	CWC15	Q03772	175 aa	Known RBP	11.37	□□□□□ -0.59
MET28	YIR017C	SPN1	Q06505	410 aa	Predicted RBP	11.37	□□□□□ -0.59
MET28	YIR017C	GAL2	P13181	574 aa		11.36	□□□□□ -0.59
MET28	YIR017C	ADP1	P25371	1049 aa		11.36	□□□□□ -0.59
MET28	YIR017C	CIC1	P38779	376 aa	Known RBP	11.36	□□□□□ -0.59
MET28	YIR017C	CRG1	P38892	291 aa	RIP-Chip data	11.36	□□□□□ -0.59	not detected
MET28	YIR017C	SPO22	P40511	975 aa		11.36	□□□□□ -0.59
MET28	YIR017C	UFD2	P54860	961 aa		11.36	□□□□□ -0.59
MET28	YIR017C	RPS15	Q01855	142 aa	Known RBP	11.36	□□□□□ -0.59
MET28	YIR017C	ESF1	Q06344	628 aa	Known RBP	11.36	□□□□□ -0.59
MET28	YIR017C	PMA1	P05030	918 aa	Known RBP	11.35	□□□□□ -0.59
MET28	YIR017C	SIS2	P36024	562 aa		11.35	□□□□□ -0.59
MET28	YIR017C	YBL028C	P38202	106 aa		11.35	□□□□□ -0.59
MET28	YIR017C	RAD53	P22216	821 aa		11.34	□□□□□ -0.59
MET28	YIR017C	IMP2'	P32351	346 aa		11.34	□□□□□ -0.59
MET28	YIR017C	TPS3	P38426	1054 aa	Known RBP	11.34	□□□□□ -0.59
MET28	YIR017C	RAD61	Q99359	647 aa		11.34	□□□□□ -0.59
MET28	YIR017C	FLO1	P32768	1537 aa		11.34	□□□□□ -0.59
MET28	YIR017C	CHO2	P05374	869 aa	Known RBP	11.33	□□□□□ -0.6
MET28	YIR017C	PEP3	P27801	918 aa		11.33	□□□□□ -0.6
MET28	YIR017C	VID27	P40157	782 aa		11.33	□□□□□ -0.6
MET28	YIR017C	YIR014W	P40570	242 aa		11.33	□□□□□ -0.6
MET28	YIR017C	SNU71	P53207	620 aa	Known RBP	11.33	□□□□□ -0.6
MET28	YIR017C	YDL124W	Q07551	312 aa	Known RBP	11.33	□□□□□ -0.6
MET28	YIR017C	RNR2	P09938	399 aa	Known RBP	11.32	□□□□□ -0.6
MET28	YIR017C	MPH3	P0CE00	602 aa		11.32	□□□□□ -0.6
MET28	YIR017C	RER2	P35196	286 aa		11.32	□□□□□ -0.6
MET28	YIR017C	YHL050C	P38721	697 aa		11.32	□□□□□ -0.6
MET28	YIR017C	PGA3	Q12746	312 aa	Known RBP	11.32	□□□□□ -0.6
MET28	YIR017C	TRL1	P09880	827 aa	Known RBP	11.31	□□□□□ -0.6
MET28	YIR017C	KIN1	P13185	1064 aa		11.31	□□□□□ -0.6
MET28	YIR017C	PRE8	P23639	250 aa		11.31	□□□□□ -0.6
MET28	YIR017C	KEL1	P38853	1164 aa	Known RBP	11.31	□□□□□ -0.6
MET28	YIR017C	VPS8	P39702	1274 aa		11.31	□□□□□ -0.6
MET28	YIR017C	CSR2	Q12734	1121 aa		11.31	□□□□□ -0.6
MET28	YIR017C	SRM1	P21827	482 aa		11.3	□□□□□ -0.6
MET28	YIR017C	ANP1	P32629	500 aa		11.3	□□□□□ -0.6
MET28	YIR017C	CST26	P38226	397 aa		11.3	□□□□□ -0.6
MET28	YIR017C	AIM9	P40053	627 aa	Known RBP	11.3	□□□□□ -0.6
MET28	YIR017C	YIL089W	P40500	205 aa		11.3	□□□□□ -0.6
MET28	YIR017C	RRT6	P53117	311 aa	Predicted RBP	11.3	□□□□□ -0.6
MET28	YIR017C	ARP5	P53946	755 aa		11.3	□□□□□ -0.6
MET28	YIR017C	EST2	Q06163	884 aa		11.29	□□□□□ -0.6
MET28	YIR017C	TYW1	Q08960	810 aa	Known RBP	11.29	□□□□□ -0.6
MET28	YIR017C	RLF2	Q12495	606 aa		11.29	□□□□□ -0.6
MET28	YIR017C	RIT1	P23796	513 aa		11.28	□□□□□ -0.6
MET28	YIR017C	MYO3	P36006	1272 aa		11.28	□□□□□ -0.6
MET28	YIR017C	YCK3	P39962	524 aa		11.28	□□□□□ -0.6
MET28	YIR017C	PES4	P39684	611 aa		11.27	□□□□□ -0.61
MET28	YIR017C	ALG2	P43636	503 aa		11.27	□□□□□ -0.61
MET28	YIR017C	VID28	P40547	921 aa		11.26	□□□□□ -0.61
MET28	YIR017C	LAP2	Q10740	671 aa		11.26	□□□□□ -0.61
MET28	YIR017C	GIN4	Q12263	1142 aa		11.26	□□□□□ -0.61
MET28	YIR017C	TUB2	P02557	457 aa	Known RBP	11.25	□□□□□ -0.61
MET28	YIR017C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	11.25	□□□□□ -0.61	not detected
MET28	YIR017C	SPT21	P35209	758 aa		11.25	□□□□□ -0.61
MET28	YIR017C	PNT1	P38969	423 aa		11.25	□□□□□ -0.61
MET28	YIR017C	SKG3	Q06315	1026 aa		11.25	□□□□□ -0.61
MET28	YIR017C	SRS2	P12954	1174 aa		11.24	□□□□□ -0.61
MET28	YIR017C	MAK31	P23059	88 aa		11.24	□□□□□ -0.61
MET28	YIR017C	ACA1	P39970	489 aa		11.24	□□□□□ -0.61
MET28	YIR017C	YKE2	P52553	114 aa		11.24	□□□□□ -0.61
MET28	YIR017C	RPT6	Q01939	405 aa	Known RBP	11.24	□□□□□ -0.61
MET28	YIR017C	TFC6	Q06339	672 aa		11.24	□□□□□ -0.61
MET28	YIR017C	CLF1	Q12309	687 aa	Predicted RBP	11.24	□□□□□ -0.61
MET28	YIR017C	ERG12	P07277	443 aa		11.23	□□□□□ -0.61
MET28	YIR017C	RPL8B	P29453	256 aa	Known RBP	11.23	□□□□□ -0.61
MET28	YIR017C	PRO3	P32263	286 aa	Known RBP	11.23	□□□□□ -0.61
MET28	YIR017C	FBP26	P32604	452 aa		11.23	□□□□□ -0.61
MET28	YIR017C	HDA1	P53973	706 aa		11.23	□□□□□ -0.61
MET28	YIR017C	SUB2	Q07478	446 aa	Known RBP	11.23	□□□□□ -0.61
MET28	YIR017C	ACE2	P21192	770 aa		11.22	□□□□□ -0.61
MET28	YIR017C	CHS3	P29465	1165 aa		11.22	□□□□□ -0.61
MET28	YIR017C	MAL31	P38156	614 aa		11.22	□□□□□ -0.61
MET28	YIR017C	BSD2	P38356	321 aa		11.22	□□□□□ -0.61
MET28	YIR017C	PTK2	P47116	818 aa	Known RBP	11.22	□□□□□ -0.61
MET28	YIR017C	FOL1	P53848	824 aa		11.22	□□□□□ -0.61
MET28	YIR017C	MATALPHA2	P0CY08	210 aa		11.21	□□□□□ -0.61
MET28	YIR017C	HMLALPHA2	P0CY09	210 aa		11.21	□□□□□ -0.61
MET28	YIR017C	OCT1	P35999	772 aa		11.21	□□□□□ -0.61
MET28	YIR017C	PCS60	P38137	543 aa	Known RBP RIP-Chip data	11.21	□□□□□ -0.61	not detected
MET28	YIR017C	OPY1	P38271	328 aa		11.21	□□□□□ -0.61
MET28	YIR017C	PSK2	Q08217	1101 aa		11.21	□□□□□ -0.61
MET28	YIR017C	RPL19A	P0CX82	189 aa	Known RBP	11.2	□□□□□ -0.62
MET28	YIR017C	RPL19B	P0CX83	189 aa	Predicted RBP	11.2	□□□□□ -0.62
MET28	YIR017C	UBP10	P53874	792 aa	Predicted RBP	11.2	□□□□□ -0.62
MET28	YIR017C	ECM23	Q02710	187 aa		11.2	□□□□□ -0.62
MET28	YIR017C	VPS30	Q02948	557 aa		11.2	□□□□□ -0.62
MET28	YIR017C	PEX29	Q03370	554 aa		11.2	□□□□□ -0.62
MET28	YIR017C	MYO5	Q04439	1219 aa	Known RBP	11.2	□□□□□ -0.62
MET28	YIR017C	TSR3	Q12094	313 aa	Known RBP	11.2	□□□□□ -0.62

Retrieved 100 of 5,963 RNA–protein pairs in 54.6 ms