RNA–Protein interactions for RNA: YIL123W

SIM1, Transcript of Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p), yeastyeast

Gene SIM1, Length 1,431 nt, Biotype protein coding, Subcellular localisation Mitochondria .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIM1YIL123W EST2Q06163 884 aa12.96□□□□□ -0.33
SIM1YIL123W MBR1P23493 339 aa12.96□□□□□ -0.34
SIM1YIL123W UBP10P53874 792 aaPredicted RBP12.96□□□□□ -0.34
SIM1YIL123W FAS2P19097 1887 aaKnown RBP12.95□□□□□ -0.34
SIM1YIL123W RET1P22276 1149 aaKnown RBP12.95□□□□□ -0.34
SIM1YIL123W JJJ2P46997 583 aa12.95□□□□□ -0.34
SIM1YIL123W ENT3P47160 408 aa12.95□□□□□ -0.34
SIM1YIL123W PIL1P53252 339 aaKnown RBP12.95□□□□□ -0.34
SIM1YIL123W RPS15Q01855 142 aaKnown RBP12.95□□□□□ -0.34
SIM1YIL123W CHO2P05374 869 aaKnown RBP12.94□□□□□ -0.34
SIM1YIL123W MPH3P0CE00 602 aa12.94□□□□□ -0.34
SIM1YIL123W BUD6P41697 788 aa12.94□□□□□ -0.34
SIM1YIL123W WRS1Q12109 432 aaKnown RBP12.94□□□□□ -0.34
SIM1YIL123W APC11Q12157 165 aa12.94□□□□□ -0.34
SIM1YIL123W GRX6Q12438 231 aa12.94□□□□□ -0.34
SIM1YIL123W SNF3P10870 884 aa12.93□□□□□ -0.34
SIM1YIL123W RDS1P25611 832 aa12.93□□□□□ -0.34
SIM1YIL123W MAL33P38157 468 aa12.93□□□□□ -0.34
SIM1YIL123W CCT5P40413 562 aaKnown RBP12.93□□□□□ -0.34
SIM1YIL123W UFD2P54860 961 aa12.93□□□□□ -0.34
SIM1YIL123W TOS4Q06266 489 aa12.93□□□□□ -0.34
SIM1YIL123W MDL2P33311 773 aa12.92□□□□□ -0.34
SIM1YIL123W RTS1P38903 757 aa12.92□□□□□ -0.34
SIM1YIL123W SET4P42948 560 aa12.92□□□□□ -0.34
SIM1YIL123W ETT1Q08421 412 aaKnown RBP12.92□□□□□ -0.34
SIM1YIL123W RKM3P38222 552 aa12.91□□□□□ -0.34
SIM1YIL123W RFC5P38251 354 aa12.91□□□□□ -0.34
SIM1YIL123W LCD1Q04377 747 aa12.91□□□□□ -0.34
SIM1YIL123W RSC1P53236 928 aa12.9□□□□□ -0.34
SIM1YIL123W CTT1P06115 562 aa12.89□□□□□ -0.35
SIM1YIL123W FRS2P15625 503 aaKnown RBP12.89□□□□□ -0.35
SIM1YIL123W PFK2P16862 959 aaKnown RBP RIP-Chip data12.89□□□□□ -0.35not detected
SIM1YIL123W CBP3P21560 335 aa12.89□□□□□ -0.35
SIM1YIL123W MYO3P36006 1272 aa12.89□□□□□ -0.35
SIM1YIL123W EPL1P43572 832 aa12.89□□□□□ -0.35
SIM1YIL123W PIP2P52960 996 aa12.89□□□□□ -0.35
SIM1YIL123W PRP42Q03776 544 aaKnown RBP12.89□□□□□ -0.35
SIM1YIL123W DDP1Q99321 188 aaKnown RBP12.89□□□□□ -0.35
SIM1YIL123W ARG82P07250 355 aa12.88□□□□□ -0.35
SIM1YIL123W ANP1P32629 500 aa12.88□□□□□ -0.35
SIM1YIL123W EAF6P47128 113 aa12.88□□□□□ -0.35
SIM1YIL123W MRD1Q06106 887 aaKnown RBP12.88□□□□□ -0.35
SIM1YIL123W TFC6Q06339 672 aa12.88□□□□□ -0.35
SIM1YIL123W ISW2Q08773 1120 aa12.88□□□□□ -0.35
SIM1YIL123W HKR1P41809 1802 aa12.88□□□□□ -0.35
SIM1YIL123W PGI1P12709 554 aaKnown RBP12.88□□□□□ -0.35
SIM1YIL123W DIT2P21595 489 aa12.88□□□□□ -0.35
SIM1YIL123W DID4P36108 232 aa12.88□□□□□ -0.35
SIM1YIL123W YHL050CP38721 697 aa12.88□□□□□ -0.35
SIM1YIL123W AKR1P39010 764 aa12.88□□□□□ -0.35
SIM1YIL123W BMH2P34730 273 aaKnown RBP12.87□□□□□ -0.35
SIM1YIL123W TIF4632P39936 914 aaKnown RBP12.87□□□□□ -0.35
SIM1YIL123W APL6P46682 809 aa12.87□□□□□ -0.35
SIM1YIL123W HDA1P53973 706 aa12.87□□□□□ -0.35
SIM1YIL123W KIN4Q01919 800 aa12.87□□□□□ -0.35
SIM1YIL123W YKU70P32807 602 aa12.86□□□□□ -0.35
SIM1YIL123W GAS5Q08193 484 aa12.86□□□□□ -0.35
SIM1YIL123W YPL260WQ08977 551 aa12.86□□□□□ -0.35
SIM1YIL123W PTK2P47116 818 aaKnown RBP12.85□□□□□ -0.35
SIM1YIL123W RAD61Q99359 647 aa12.85□□□□□ -0.35
SIM1YIL123W FLO1P32768 1537 aa12.84□□□□□ -0.35
SIM1YIL123W SWI4P25302 1093 aaKnown RBP12.84□□□□□ -0.35
SIM1YIL123W RFT1P38206 574 aaPredicted RBP12.84□□□□□ -0.35
SIM1YIL123W RPN10P38886 268 aaKnown RBP12.84□□□□□ -0.35
SIM1YIL123W GSM1P42950 618 aa12.84□□□□□ -0.35
SIM1YIL123W PUS6P53294 404 aa12.84□□□□□ -0.35
SIM1YIL123W NSG2P53898 299 aa12.84□□□□□ -0.35
SIM1YIL123W HSP82P02829 709 aaKnown RBP12.83□□□□□ -0.36
SIM1YIL123W MAK31P23059 88 aa12.83□□□□□ -0.36
SIM1YIL123W ICL1P28240 557 aaPredicted RBP12.83□□□□□ -0.36
SIM1YIL123W MAL31P38156 614 aa12.83□□□□□ -0.36
SIM1YIL123W ALG2P43636 503 aa12.83□□□□□ -0.36
SIM1YIL123W FAR11P53917 953 aa12.83□□□□□ -0.36
SIM1YIL123W DPL1Q05567 589 aa12.83□□□□□ -0.36
SIM1YIL123W ACK1Q07622 623 aaPredicted RBP12.83□□□□□ -0.36
SIM1YIL123W TAF13P11747 167 aa12.82□□□□□ -0.36
SIM1YIL123W HCA4P20448 770 aaKnown RBP12.82□□□□□ -0.36
SIM1YIL123W NPR3P38742 1146 aa12.82□□□□□ -0.36
SIM1YIL123W VID27P40157 782 aa12.82□□□□□ -0.36
SIM1YIL123W MSH4P40965 878 aaPredicted RBP12.81□□□□□ -0.36
SIM1YIL123W MYO5Q04439 1219 aaKnown RBP12.81□□□□□ -0.36
SIM1YIL123W YPR148CQ06523 435 aa12.81□□□□□ -0.36
SIM1YIL123W RRG1Q12167 365 aaPredicted RBP12.81□□□□□ -0.36
SIM1YIL123W RIT1P23796 513 aa12.8□□□□□ -0.36
SIM1YIL123W RPS7AP26786 190 aaKnown RBP12.8□□□□□ -0.36
SIM1YIL123W ASF1P32447 279 aa12.8□□□□□ -0.36
SIM1YIL123W YER156CP40093 338 aaKnown RBP12.8□□□□□ -0.36
SIM1YIL123W YPT11P48559 417 aa12.8□□□□□ -0.36
SIM1YIL123W RNR3P21672 869 aaKnown RBP12.79□□□□□ -0.36
SIM1YIL123W DCS2Q12123 353 aa12.79□□□□□ -0.36
SIM1YIL123W YOR111WQ99210 232 aa12.79□□□□□ -0.36
SIM1YIL123W TRS33Q99394 268 aa12.79□□□□□ -0.36
SIM1YIL123W GPA1P08539 472 aa12.79□□□□□ -0.36
SIM1YIL123W CDC6P09119 513 aa12.79□□□□□ -0.36
SIM1YIL123W CSM2P40465 213 aa12.79□□□□□ -0.36
SIM1YIL123W GDE1Q02979 1223 aa12.79□□□□□ -0.36
SIM1YIL123W KEL3Q08979 651 aaPredicted RBP12.79□□□□□ -0.36
SIM1YIL123W RPS9BP05755 195 aaKnown RBP12.78□□□□□ -0.36
SIM1YIL123W PRO3P32263 286 aaKnown RBP12.78□□□□□ -0.36
SIM1YIL123W RXT2P38255 430 aa12.78□□□□□ -0.36
Retrieved 100 of 5,963 RNA–protein pairs in 33.1 ms