RNA–Protein interactions for RNA: YFL009W

CDC4, Transcript of F-box protein required for both the G1/S and G2/M phase transitions, yeast

Gene CDC4, Length 2,340 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC4	YFL009W	CEP3	P40969	608 aa		5.77	□□□□□ -1.49
CDC4	YFL009W	YML082W	Q04533	649 aa	Known RBP	5.77	□□□□□ -1.49
CDC4	YFL009W	HAP1	P0CE41	1502 aa		5.77	□□□□□ -1.49
CDC4	YFL009W	RRN6	P32786	894 aa		5.77	□□□□□ -1.49
CDC4	YFL009W	IXR1	P33417	597 aa		5.77	□□□□□ -1.49
CDC4	YFL009W	SPT23	P35210	1082 aa		5.77	□□□□□ -1.49
CDC4	YFL009W	MLP1	Q02455	1875 aa	Known RBP	5.77	□□□□□ -1.49
CDC4	YFL009W	SNF2	P22082	1703 aa		5.77	□□□□□ -1.49
CDC4	YFL009W	HEM3	P28789	327 aa		5.76	□□□□□ -1.49
CDC4	YFL009W	PSH1	Q12161	406 aa		5.76	□□□□□ -1.49
CDC4	YFL009W	RPO21	P04050	1733 aa	Known RBP	5.76	□□□□□ -1.49
CDC4	YFL009W	SUV3	P32580	737 aa		5.76	□□□□□ -1.49
CDC4	YFL009W	PBY1	P38254	753 aa		5.76	□□□□□ -1.49
CDC4	YFL009W	RRT14	P40470	206 aa		5.76	□□□□□ -1.49
CDC4	YFL009W	YGL081W	P53156	320 aa		5.76	□□□□□ -1.49
CDC4	YFL009W	MRS2	Q01926	470 aa		5.76	□□□□□ -1.49
CDC4	YFL009W	THI22	Q06490	572 aa		5.76	□□□□□ -1.49
CDC4	YFL009W	WHI5	Q12416	295 aa		5.76	□□□□□ -1.49
CDC4	YFL009W	SWE1	P32944	819 aa		5.75	□□□□□ -1.49
CDC4	YFL009W	MIC60	P36112	540 aa		5.75	□□□□□ -1.49
CDC4	YFL009W	YNL050C	P53952	270 aa		5.75	□□□□□ -1.49
CDC4	YFL009W	NTE1	Q04958	1679 aa		5.75	□□□□□ -1.49
CDC4	YFL009W	ROM2	P51862	1356 aa	Known RBP	5.75	□□□□□ -1.49
CDC4	YFL009W	BDH2	P39713	417 aa		5.75	□□□□□ -1.49
CDC4	YFL009W	PTC2	P39966	464 aa	Known RBP	5.75	□□□□□ -1.49
CDC4	YFL009W	CIR1	P42940	261 aa		5.75	□□□□□ -1.49
CDC4	YFL009W	NUP145	P49687	1317 aa		5.75	□□□□□ -1.49
CDC4	YFL009W	KRE5	P22023	1365 aa		5.75	□□□□□ -1.49
CDC4	YFL009W	SDH2	P21801	266 aa		5.74	□□□□□ -1.49
CDC4	YFL009W	RPN12	P32496	274 aa		5.74	□□□□□ -1.49
CDC4	YFL009W	MPE1	P35728	441 aa	Known RBP	5.74	□□□□□ -1.49
CDC4	YFL009W	YAP3	P38749	330 aa		5.74	□□□□□ -1.49
CDC4	YFL009W	HEF3	P53978	1044 aa	Known RBP	5.74	□□□□□ -1.49
CDC4	YFL009W	ELP4	Q02884	456 aa	Known RBP	5.74	□□□□□ -1.49
CDC4	YFL009W	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	5.74	□□□□□ -1.49	not detected
CDC4	YFL009W	TSC13	Q99190	310 aa		5.74	□□□□□ -1.49
CDC4	YFL009W	ATE1	P16639	503 aa		5.74	□□□□□ -1.49
CDC4	YFL009W	PRD1	P25375	712 aa		5.74	□□□□□ -1.49
CDC4	YFL009W	RVS167	P39743	482 aa	Known RBP	5.74	□□□□□ -1.49
CDC4	YFL009W	ETT1	Q08421	412 aa	Known RBP	5.74	□□□□□ -1.49
CDC4	YFL009W	MSC6	Q08818	692 aa	Known RBP	5.74	□□□□□ -1.49
CDC4	YFL009W	SFI1	Q12369	946 aa		5.74	□□□□□ -1.49
CDC4	YFL009W	HAP4	P14064	554 aa		5.73	□□□□□ -1.49
CDC4	YFL009W	SAP190	P36123	1033 aa		5.73	□□□□□ -1.49
CDC4	YFL009W	NPA3	P47122	385 aa		5.73	□□□□□ -1.49
CDC4	YFL009W	KXD1	P53158	218 aa		5.73	□□□□□ -1.49
CDC4	YFL009W	KAR5	Q04746	504 aa		5.73	□□□□□ -1.49
CDC4	YFL009W	PNP1	Q05788	311 aa		5.73	□□□□□ -1.49
CDC4	YFL009W	PDI1	P17967	522 aa	Known RBP	5.73	□□□□□ -1.49
CDC4	YFL009W	DLD1	P32891	587 aa		5.73	□□□□□ -1.49
CDC4	YFL009W	YHL050C	P38721	697 aa		5.73	□□□□□ -1.49
CDC4	YFL009W	YHR219W	P38900	624 aa		5.73	□□□□□ -1.49
CDC4	YFL009W	ALD2	P47771	506 aa		5.73	□□□□□ -1.49
CDC4	YFL009W	KRE33	P53914	1056 aa	Known RBP	5.73	□□□□□ -1.49
CDC4	YFL009W	ECM16	Q04217	1267 aa	Known RBP	5.73	□□□□□ -1.49
CDC4	YFL009W	NUP192	P47054	1683 aa		5.72	□□□□□ -1.49
CDC4	YFL009W	PET111	P08468	800 aa		5.72	□□□□□ -1.49
CDC4	YFL009W	STM1	P39015	273 aa	Known RBP	5.72	□□□□□ -1.49
CDC4	YFL009W	HYR1	P40581	163 aa	Known RBP	5.72	□□□□□ -1.49
CDC4	YFL009W	TAF8	Q03750	510 aa		5.72	□□□□□ -1.49
CDC4	YFL009W	SML1	Q04964	104 aa		5.72	□□□□□ -1.49
CDC4	YFL009W	ISR1	Q06098	443 aa	Known RBP	5.72	□□□□□ -1.49
CDC4	YFL009W	GAS4	Q08271	471 aa		5.72	□□□□□ -1.49
CDC4	YFL009W	BNR1	P40450	1375 aa		5.72	□□□□□ -1.49
CDC4	YFL009W	RTT107	P38850	1070 aa		5.71	□□□□□ -1.49
CDC4	YFL009W	HST1	P53685	503 aa		5.71	□□□□□ -1.49
CDC4	YFL009W	DOS2	P54858	310 aa		5.71	□□□□□ -1.49
CDC4	YFL009W	VPS30	Q02948	557 aa		5.71	□□□□□ -1.49
CDC4	YFL009W	RTT109	Q07794	436 aa		5.71	□□□□□ -1.49
CDC4	YFL009W	SEC39	Q12745	709 aa		5.71	□□□□□ -1.49
CDC4	YFL009W	FRT1	Q99332	602 aa		5.71	□□□□□ -1.49
CDC4	YFL009W	VMR1	P38735	1592 aa		5.71	□□□□□ -1.49
CDC4	YFL009W	CHC1	P22137	1653 aa	Known RBP	5.71	□□□□□ -1.5
CDC4	YFL009W	RAD3	P06839	778 aa		5.71	□□□□□ -1.5
CDC4	YFL009W	TAF13	P11747	167 aa		5.71	□□□□□ -1.5
CDC4	YFL009W	CYC8	P14922	966 aa		5.71	□□□□□ -1.5
CDC4	YFL009W	MSH1	P25846	959 aa		5.71	□□□□□ -1.5
CDC4	YFL009W	PRE3	P38624	215 aa		5.71	□□□□□ -1.5
CDC4	YFL009W	RIO2	P40160	425 aa	Known RBP	5.71	□□□□□ -1.5
CDC4	YFL009W	VPS20	Q04272	221 aa		5.71	□□□□□ -1.5
CDC4	YFL009W	RPN7	Q06103	429 aa	Known RBP	5.71	□□□□□ -1.5
CDC4	YFL009W	HDA3	Q06623	655 aa		5.71	□□□□□ -1.5
CDC4	YFL009W	RAD51	P25454	400 aa		5.7	□□□□□ -1.5
CDC4	YFL009W	ATG3	P40344	310 aa		5.7	□□□□□ -1.5
CDC4	YFL009W	ATG1	P53104	897 aa		5.7	□□□□□ -1.5
CDC4	YFL009W	NKP2	Q06162	153 aa		5.7	□□□□□ -1.5
CDC4	YFL009W	MRC1	P25588	1096 aa		5.7	□□□□□ -1.5
CDC4	YFL009W	ZUO1	P32527	433 aa	Known RBP	5.7	□□□□□ -1.5
CDC4	YFL009W	BOI1	P38041	980 aa	Known RBP	5.7	□□□□□ -1.5
CDC4	YFL009W	BRN1	P38170	754 aa		5.7	□□□□□ -1.5
CDC4	YFL009W	RSM25	P40496	264 aa		5.7	□□□□□ -1.5
CDC4	YFL009W	GCR2	Q01722	534 aa		5.7	□□□□□ -1.5
CDC4	YFL009W	YVC1	Q12324	675 aa		5.7	□□□□□ -1.5
CDC4	YFL009W	PSK1	P31374	1356 aa		5.7	□□□□□ -1.5
CDC4	YFL009W	AUS1	Q08409	1394 aa		5.7	□□□□□ -1.5
CDC4	YFL009W	MIP1	P15801	1254 aa		5.69	□□□□□ -1.5
CDC4	YFL009W	MFT1	P33441	392 aa	Known RBP	5.69	□□□□□ -1.5
CDC4	YFL009W	SWH1	P35845	1188 aa		5.69	□□□□□ -1.5
CDC4	YFL009W	GRS1	P38088	690 aa	Known RBP	5.69	□□□□□ -1.5
CDC4	YFL009W	AIM9	P40053	627 aa	Known RBP	5.69	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 14 ms