RNA–Protein interactions for RNA: YBR275C

RIF1, Transcript of Protein that binds to the Rap1p C-terminus, yeast

Gene RIF1, Length 5,751 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RIF1	YBR275C	SLX4	Q12098	748 aa		3.22	□□□□□ -1.89
RIF1	YBR275C	RAD50	P12753	1312 aa		3.22	□□□□□ -1.89
RIF1	YBR275C	PET309	P32522	965 aa	Predicted RBP	3.21	□□□□□ -1.89
RIF1	YBR275C	SQT1	P35184	431 aa		3.21	□□□□□ -1.89
RIF1	YBR275C	VPS45	P38932	577 aa		3.21	□□□□□ -1.89
RIF1	YBR275C	TAF1	P46677	1066 aa		3.21	□□□□□ -1.89
RIF1	YBR275C	GIM3	P53900	129 aa		3.21	□□□□□ -1.89
RIF1	YBR275C	HCR1	Q05775	265 aa	Known RBP	3.21	□□□□□ -1.89
RIF1	YBR275C	ATG11	Q12527	1178 aa		3.21	□□□□□ -1.89
RIF1	YBR275C	MDM12	Q92328	271 aa		3.21	□□□□□ -1.89
RIF1	YBR275C	CDC37	P06101	506 aa	Known RBP	3.21	□□□□□ -1.9
RIF1	YBR275C	GRX1	P25373	110 aa	Known RBP	3.21	□□□□□ -1.9
RIF1	YBR275C	GSM1	P42950	618 aa		3.21	□□□□□ -1.9
RIF1	YBR275C	MAD3	P47074	515 aa		3.21	□□□□□ -1.9
RIF1	YBR275C	RSM7	P47150	247 aa		3.21	□□□□□ -1.9
RIF1	YBR275C	SNU71	P53207	620 aa	Known RBP	3.21	□□□□□ -1.9
RIF1	YBR275C	BTN2	P53286	410 aa		3.21	□□□□□ -1.9
RIF1	YBR275C	HDA1	P53973	706 aa		3.21	□□□□□ -1.9
RIF1	YBR275C	TRM732	Q03496	1420 aa		3.21	□□□□□ -1.9
RIF1	YBR275C	PEP5	P12868	1029 aa		3.21	□□□□□ -1.9
RIF1	YBR275C	AFT1	P22149	690 aa		3.21	□□□□□ -1.9
RIF1	YBR275C	PLC1	P32383	869 aa		3.21	□□□□□ -1.9
RIF1	YBR275C	MSR1	P38714	643 aa		3.21	□□□□□ -1.9
RIF1	YBR275C	YMR074C	Q04773	145 aa		3.21	□□□□□ -1.9
RIF1	YBR275C	PSK1	P31374	1356 aa		3.21	□□□□□ -1.9
RIF1	YBR275C	HSM3	P38348	480 aa		3.21	□□□□□ -1.9
RIF1	YBR275C	YBR287W	P38355	427 aa		3.21	□□□□□ -1.9
RIF1	YBR275C	ESC8	Q08119	714 aa		3.21	□□□□□ -1.9
RIF1	YBR275C	NCR1	Q12200	1170 aa		3.21	□□□□□ -1.9
RIF1	YBR275C	HSP104	P31539	908 aa	Known RBP	3.21	□□□□□ -1.9
RIF1	YBR275C	RPT5	P33297	434 aa	Known RBP	3.21	□□□□□ -1.9
RIF1	YBR275C	NOP4	P37838	685 aa	Known RBP	3.21	□□□□□ -1.9
RIF1	YBR275C	GTT3	P39996	337 aa		3.21	□□□□□ -1.9
RIF1	YBR275C	MPH1	P40562	993 aa		3.21	□□□□□ -1.9
RIF1	YBR275C	MNN11	P46985	422 aa	Known RBP	3.21	□□□□□ -1.9
RIF1	YBR275C	TSR1	Q07381	788 aa	Known RBP	3.21	□□□□□ -1.9
RIF1	YBR275C	GPN2	Q08726	347 aa	Predicted RBP	3.21	□□□□□ -1.9
RIF1	YBR275C	RAD2	P07276	1031 aa		3.2	□□□□□ -1.9
RIF1	YBR275C	PBS2	P08018	668 aa		3.2	□□□□□ -1.9
RIF1	YBR275C	SSB1	P11484	613 aa	Known RBP	3.2	□□□□□ -1.9
RIF1	YBR275C	HAP4	P14064	554 aa		3.2	□□□□□ -1.9
RIF1	YBR275C	TEC1	P18412	486 aa		3.2	□□□□□ -1.9
RIF1	YBR275C	SSB2	P40150	613 aa	Known RBP	3.2	□□□□□ -1.9
RIF1	YBR275C	SAM37	P50110	327 aa		3.2	□□□□□ -1.9
RIF1	YBR275C	YGR130C	P53278	816 aa		3.2	□□□□□ -1.9
RIF1	YBR275C	INA17	Q02888	182 aa		3.2	□□□□□ -1.9
RIF1	YBR275C	ESC2	Q06340	456 aa		3.2	□□□□□ -1.9
RIF1	YBR275C	SEY1	Q99287	776 aa		3.2	□□□□□ -1.9
RIF1	YBR275C	BUD4	P47136	1447 aa		3.2	□□□□□ -1.9
RIF1	YBR275C	NOT3	P06102	836 aa	Known RBP	3.2	□□□□□ -1.9
RIF1	YBR275C	SIC1	P38634	284 aa		3.2	□□□□□ -1.9
RIF1	YBR275C	ETP1	P38748	585 aa	Known RBP	3.2	□□□□□ -1.9
RIF1	YBR275C	EPS1	P40557	701 aa		3.2	□□□□□ -1.9
RIF1	YBR275C	SKY1	Q03656	742 aa		3.2	□□□□□ -1.9
RIF1	YBR275C	PRP4	P20053	465 aa	Known RBP	3.2	□□□□□ -1.9
RIF1	YBR275C	MAK11	P20484	414 aa	Known RBP	3.2	□□□□□ -1.9
RIF1	YBR275C	WHI3	P34761	661 aa	Known RBP	3.2	□□□□□ -1.9
RIF1	YBR275C	RPG1	P38249	964 aa	Known RBP	3.2	□□□□□ -1.9
RIF1	YBR275C	UBP7	P40453	1071 aa		3.2	□□□□□ -1.9
RIF1	YBR275C	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	3.2	□□□□□ -1.9	not detected
RIF1	YBR275C	RRP40	Q08285	240 aa	Known RBP	3.2	□□□□□ -1.9
RIF1	YBR275C	YDR056C	Q12025	205 aa		3.2	□□□□□ -1.9
RIF1	YBR275C	AI3	P03877	415 aa		3.2	□□□□□ -1.9
RIF1	YBR275C	MEI4	P29467	408 aa		3.2	□□□□□ -1.9
RIF1	YBR275C	FYV10	P40492	516 aa		3.2	□□□□□ -1.9
RIF1	YBR275C	SKO1	Q02100	647 aa		3.2	□□□□□ -1.9
RIF1	YBR275C	HRD3	Q05787	833 aa		3.2	□□□□□ -1.9
RIF1	YBR275C	MAS1	P10507	462 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	VMA1	P17255	1071 aa	Known RBP	3.19	□□□□□ -1.9
RIF1	YBR275C	CMK1	P27466	446 aa	Known RBP	3.19	□□□□□ -1.9
RIF1	YBR275C	VPH1	P32563	840 aa	Known RBP	3.19	□□□□□ -1.9
RIF1	YBR275C	PET10	P36139	283 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	STN1	P38960	494 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	MBP1	P39678	833 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	MNT3	P40549	630 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	BSP1	Q06604	576 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	MSC6	Q08818	692 aa	Known RBP	3.19	□□□□□ -1.9
RIF1	YBR275C	TSR3	Q12094	313 aa	Known RBP	3.19	□□□□□ -1.9
RIF1	YBR275C	SRO9	P25567	434 aa	Known RBP	3.19	□□□□□ -1.9
RIF1	YBR275C	YIH1	P25637	258 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	TFC3	P34111	1160 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	BDF1	P35817	686 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	TYS1	P36421	394 aa	Known RBP	3.19	□□□□□ -1.9
RIF1	YBR275C	RAD55	P38953	406 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	VPS8	P39702	1274 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	YGL036W	P53185	909 aa	Predicted RBP	3.19	□□□□□ -1.9
RIF1	YBR275C	YOR223W	Q12015	292 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	3.19	□□□□□ -1.9	not detected
RIF1	YBR275C	SBA1	P28707	216 aa	Known RBP	3.19	□□□□□ -1.9
RIF1	YBR275C	PBY1	P38254	753 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	APD1	P38281	316 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	SMF1	P38925	575 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	SUM1	P46676	1062 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	ECL1	P48235	211 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	VPS72	Q03388	795 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	AI2	P03876	854 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	MOD5	P07884	428 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	MAC1	P35192	417 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	APN2	P38207	520 aa		3.19	□□□□□ -1.9
RIF1	YBR275C	RFC1	P38630	861 aa	Known RBP	3.19	□□□□□ -1.9

Retrieved 100 of 5,963 RNA–protein pairs in 40.5 ms