RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 MYT1Q01538 1121 aa14.76□□□□□ -0.05
SCN1A-222ENST00000642141 VPS72Q15906 364 aa14.76□□□□□ -0.05
SCN1A-222ENST00000642141 ZC3H6P61129 1189 aaKnown RBP14.75□□□□□ -0.05
SCN1A-222ENST00000642141 CHRNA2Q15822 529 aa14.75□□□□□ -0.05
SCN1A-222ENST00000642141 SEPT12Q8IYM1 358 aa14.75□□□□□ -0.05
SCN1A-222ENST00000642141 PRDM11Q9NQV5 511 aa14.75□□□□□ -0.05
SCN1A-222ENST00000642141 EP400Q96L91 3159 aa14.74□□□□□ -0.05
SCN1A-222ENST00000642141 GLI3P10071 1580 aa14.74□□□□□ -0.05
SCN1A-222ENST00000642141 PLEKHG3A1L390 1219 aa14.74□□□□□ -0.05
SCN1A-222ENST00000642141 ABTB2Q8N961 1025 aa14.74□□□□□ -0.05
SCN1A-222ENST00000642141 CABP1Q9NZU7 370 aa14.74□□□□□ -0.05
SCN1A-222ENST00000642141 ABCA3Q99758 1704 aa14.74□□□□□ -0.05
SCN1A-222ENST00000642141 ROCK2O75116 1388 aaKnown RBP14.73□□□□□ -0.05
SCN1A-222ENST00000642141 FAM98CQ17RN3 349 aaKnown RBP14.73□□□□□ -0.05
SCN1A-222ENST00000642141 ALS2Q96Q42 1657 aa14.73□□□□□ -0.05
SCN1A-222ENST00000642141 PPIP5K1Q6PFW1 1433 aa14.73□□□□□ -0.05
SCN1A-222ENST00000642141 PLCH1Q4KWH8 1693 aa14.72□□□□□ -0.05
SCN1A-222ENST00000642141 STRN4Q9NRL3 753 aa14.72□□□□□ -0.05
SCN1A-222ENST00000642141 POLR3AO14802 1390 aaPredicted RBP14.72□□□□□ -0.05
SCN1A-222ENST00000642141 KIAA0232Q92628 1395 aa14.72□□□□□ -0.05
SCN1A-222ENST00000642141 TRIM26Q12899 539 aaPredicted RBP14.71□□□□□ -0.05
SCN1A-222ENST00000642141 ITSN1Q15811 1721 aa14.71□□□□□ -0.05
SCN1A-222ENST00000642141 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.71□□□□□ -0.05
SCN1A-222ENST00000642141 ZBTB7CA1YPR0 619 aa14.7□□□□□ -0.06
SCN1A-222ENST00000642141 QRICH2Q9H0J4 1663 aa14.7□□□□□ -0.06
SCN1A-222ENST00000642141 EVC2Q86UK5 1308 aa14.69□□□□□ -0.06
SCN1A-222ENST00000642141 FAM182BQ5T319 152 aa14.69□□□□□ -0.06
SCN1A-222ENST00000642141 KRT27Q7Z3Y8 459 aa14.69□□□□□ -0.06
SCN1A-222ENST00000642141 USP35Q9P2H5 1018 aa14.69□□□□□ -0.06
SCN1A-222ENST00000642141 TRPM1Q7Z4N2 1603 aa14.69□□□□□ -0.06
SCN1A-222ENST00000642141 ONECUT3O60422 494 aaPredicted RBP14.68□□□□□ -0.06
SCN1A-222ENST00000642141 TOPAZ1Q8N9V7 1692 aa14.68□□□□□ -0.06
SCN1A-222ENST00000642141 NWD2Q9ULI1 1742 aa14.67□□□□□ -0.06
SCN1A-222ENST00000642141 EVA1CP58658 441 aa14.67□□□□□ -0.06
SCN1A-222ENST00000642141 CARD11Q9BXL7 1154 aa14.67□□□□□ -0.06
SCN1A-222ENST00000642141 TONSLQ96HA7 1378 aa14.67□□□□□ -0.06
SCN1A-222ENST00000642141 COL14A1Q05707 1796 aaKnown RBP14.67□□□□□ -0.06
SCN1A-222ENST00000642141 SPATA31A5Q5VU36 1347 aa14.66□□□□□ -0.06
SCN1A-222ENST00000642141 SPATA31A7Q8IWB4 1347 aa14.66□□□□□ -0.06
SCN1A-222ENST00000642141 NLRP6P59044 892 aa14.66□□□□□ -0.06
SCN1A-222ENST00000642141 DEFB132Q7Z7B7 95 aa14.66□□□□□ -0.06
SCN1A-222ENST00000642141 NLRP13Q86W25 1043 aa14.66□□□□□ -0.06
SCN1A-222ENST00000642141 BRWD3Q6RI45 1802 aa14.66□□□□□ -0.06
SCN1A-222ENST00000642141 CCDC125Q86Z20 511 aa14.65□□□□□ -0.06
SCN1A-222ENST00000642141 CRYBG1Q9Y4K1 1723 aa14.65□□□□□ -0.06
SCN1A-222ENST00000642141 NRAPQ86VF7 1730 aa14.64□□□□□ -0.07
SCN1A-222ENST00000642141 SOX12O15370 315 aa14.64□□□□□ -0.07
SCN1A-222ENST00000642141 GCP02774 474 aa14.64□□□□□ -0.07
SCN1A-222ENST00000642141 SF3B2Q13435 895 aaKnown RBP14.63□□□□□ -0.07
SCN1A-222ENST00000642141 LARP1Q6PKG0 1096 aaKnown RBP14.63□□□□□ -0.07
SCN1A-222ENST00000642141 PHRF1Q9P1Y6 1649 aaKnown RBP14.63□□□□□ -0.07
SCN1A-222ENST00000642141 USP6P35125 1406 aa14.62□□□□□ -0.07
SCN1A-222ENST00000642141 USP19O94966 1318 aa14.62□□□□□ -0.07
SCN1A-222ENST00000642141 SPATA31A1Q5TZJ5 1347 aa14.62□□□□□ -0.07
SCN1A-222ENST00000642141 BLMP54132 1417 aaPredicted RBP14.61□□□□□ -0.07
SCN1A-222ENST00000642141 TMC1Q8TDI8 760 aa14.61□□□□□ -0.07
SCN1A-222ENST00000642141 ZRANB1Q9UGI0 708 aa14.61□□□□□ -0.07
SCN1A-222ENST00000642141 TTC21BQ7Z4L5 1316 aa14.6□□□□□ -0.07
SCN1A-222ENST00000642141 SRCAPQ6ZRS2 3230 aa14.6□□□□□ -0.07
SCN1A-222ENST00000642141 CAMTA1Q9Y6Y1 1673 aa14.59□□□□□ -0.07
SCN1A-222ENST00000642141 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.59□□□□□ -0.07
SCN1A-222ENST00000642141 NRKQ7Z2Y5 1582 aa14.59□□□□□ -0.07
SCN1A-222ENST00000642141 ZNF692Q9BU19 519 aaPredicted RBP14.58□□□□□ -0.08
SCN1A-222ENST00000642141 PCGF6Q9BYE7 350 aa14.58□□□□□ -0.08
SCN1A-222ENST00000642141 CPDO75976 1380 aa14.58□□□□□ -0.08
SCN1A-222ENST00000642141 KTN1Q86UP2 1357 aaKnown RBP14.58□□□□□ -0.08
SCN1A-222ENST00000642141 SSH2Q76I76 1423 aa14.58□□□□□ -0.08
SCN1A-222ENST00000642141 SLC12A5Q9H2X9 1139 aa14.57□□□□□ -0.08
SCN1A-222ENST00000642141 TCP11L2Q8N4U5 519 aa14.56□□□□□ -0.08
SCN1A-222ENST00000642141 AXIN2Q9Y2T1 843 aa14.56□□□□□ -0.08
SCN1A-222ENST00000642141 BRD4O60885 1362 aaPredicted RBP14.56□□□□□ -0.08
SCN1A-222ENST00000642141 ST20-MTHFSA0A0A6YYL1 179 aa14.55□□□□□ -0.08
SCN1A-222ENST00000642141 TRIM37O94972 964 aa14.55□□□□□ -0.08
SCN1A-222ENST00000642141 EN1Q05925 392 aaPredicted RBP14.55□□□□□ -0.08
SCN1A-222ENST00000642141 PDE3BQ13370 1112 aa14.55□□□□□ -0.08
SCN1A-222ENST00000642141 BAG6P46379 1132 aa14.54□□□□□ -0.08
SCN1A-222ENST00000642141 NME9Q86XW9 330 aa14.54□□□□□ -0.08
SCN1A-222ENST00000642141 CPSF1Q10570 1443 aaKnown RBP14.54□□□□□ -0.08
SCN1A-222ENST00000642141 PIK3C2AO00443 1686 aa14.54□□□□□ -0.08
SCN1A-222ENST00000642141 COL5A2P05997 1499 aaPredicted RBP14.53□□□□□ -0.08
SCN1A-222ENST00000642141 BARGINQ6ZT62 677 aa14.53□□□□□ -0.08
SCN1A-222ENST00000642141 TOM1L2Q6ZVM7 507 aa14.53□□□□□ -0.08
SCN1A-222ENST00000642141 LMO7Q8WWI1 1683 aa14.52□□□□□ -0.08
SCN1A-222ENST00000642141 THSD7AQ9UPZ6 1657 aa14.52□□□□□ -0.08
SCN1A-222ENST00000642141 AATKQ6ZMQ8 1374 aa14.52□□□□□ -0.08
SCN1A-222ENST00000642141 TTC21AQ8NDW8 1320 aa14.52□□□□□ -0.08
SCN1A-222ENST00000642141 PSDA5PKW4 1024 aaPredicted RBP14.52□□□□□ -0.09
SCN1A-222ENST00000642141 HDGFL2Q7Z4V5 671 aaPredicted RBP14.52□□□□□ -0.09
SCN1A-222ENST00000642141 ARHGEF25Q86VW2 580 aa14.52□□□□□ -0.09
SCN1A-222ENST00000642141 SLIT3O75094 1523 aa14.51□□□□□ -0.09
SCN1A-222ENST00000642141 SBNO2Q9Y2G9 1366 aa14.51□□□□□ -0.09
SCN1A-222ENST00000642141 CSB-PGBD3P0DP91 1061 aa14.51□□□□□ -0.09
SCN1A-222ENST00000642141 FAM196AQ6ZSG2 479 aa14.51□□□□□ -0.09
SCN1A-222ENST00000642141 KCNH5Q8NCM2 988 aa14.51□□□□□ -0.09
SCN1A-222ENST00000642141 TESK2Q96S53 571 aa14.51□□□□□ -0.09
SCN1A-222ENST00000642141 APBA3O96018 575 aa14.49□□□□□ -0.09
SCN1A-222ENST00000642141 EZH2Q15910 746 aaKnown RBP14.49□□□□□ -0.09
SCN1A-222ENST00000642141 TERF2IPQ9NYB0 399 aa14.49□□□□□ -0.09
SCN1A-222ENST00000642141 THRAP3Q9Y2W1 955 aaKnown RBP14.49□□□□□ -0.09
SCN1A-222ENST00000642141 AKAP12Q02952 1782 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms