RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 TRDNQ13061 729 aa6.88□□□□□ -1.31
SCN1A-216ENST00000637968 TPD52L1Q16890 204 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-216ENST00000637968 EIF3AQ14152 1382 aaKnown RBP6.88□□□□□ -1.31
SCN1A-216ENST00000637968 MYO1CO00159 1063 aa6.88□□□□□ -1.31
SCN1A-216ENST00000637968 PAXBP1Q9Y5B6 917 aa6.88□□□□□ -1.31
SCN1A-216ENST00000637968 TDRD9Q8NDG6 1382 aaKnown RBP6.88□□□□□ -1.31
SCN1A-216ENST00000637968 RNF217Q8TC41 542 aa6.88□□□□□ -1.31
SCN1A-216ENST00000637968 FAM107BQ9H098 131 aa6.88□□□□□ -1.31
SCN1A-216ENST00000637968 RBSNQ9H1K0 784 aa6.88□□□□□ -1.31
SCN1A-216ENST00000637968 IBTKQ9P2D0 1353 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-216ENST00000637968 PRPF40AO75400 957 aaKnown RBP6.87□□□□□ -1.31
SCN1A-216ENST00000637968 LRSAM1Q6UWE0 723 aa6.87□□□□□ -1.31
SCN1A-216ENST00000637968 FMNL3Q8IVF7 1028 aa6.87□□□□□ -1.31
SCN1A-216ENST00000637968 PNISRQ8TF01 805 aaKnown RBP6.87□□□□□ -1.31
SCN1A-216ENST00000637968 SYCE3A1L190 88 aa6.87□□□□□ -1.31
SCN1A-216ENST00000637968 SYCP1Q15431 976 aa6.87□□□□□ -1.31
SCN1A-216ENST00000637968 MED4Q9NPJ6 270 aa6.87□□□□□ -1.31
SCN1A-216ENST00000637968 SMTNL1A8MU46 457 aa6.87□□□□□ -1.31
SCN1A-216ENST00000637968 KANK4Q5T7N3 995 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-216ENST00000637968 NBPF3Q9H094 633 aa6.87□□□□□ -1.31
SCN1A-216ENST00000637968 CFDP1Q9UEE9 299 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-216ENST00000637968 MORC2Q9Y6X9 1032 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-216ENST00000637968 KIF2AO00139 706 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-216ENST00000637968 IPO7O95373 1038 aaKnown RBP6.86□□□□□ -1.31
SCN1A-216ENST00000637968 PRIM1P49642 420 aaKnown RBP6.86□□□□□ -1.31
SCN1A-216ENST00000637968 SART3Q15020 963 aaKnown RBP6.86□□□□□ -1.31
SCN1A-216ENST00000637968 MCTP2Q6DN12 878 aa6.86□□□□□ -1.31
SCN1A-216ENST00000637968 PIK3R5Q8WYR1 880 aa6.86□□□□□ -1.31
SCN1A-216ENST00000637968 V9GYY5 206 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-216ENST00000637968 RAB3GAP1Q15042 981 aa6.86□□□□□ -1.31
SCN1A-216ENST00000637968 ZKSCAN8Q15776 578 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-216ENST00000637968 ZSCAN26Q16670 478 aa6.86□□□□□ -1.31
SCN1A-216ENST00000637968 C20orf194Q5TEA3 1177 aa6.86□□□□□ -1.31
SCN1A-216ENST00000637968 TMCO3Q6UWJ1 677 aa6.86□□□□□ -1.31
SCN1A-216ENST00000637968 RTF1Q92541 710 aaKnown RBP6.86□□□□□ -1.31
SCN1A-216ENST00000637968 STK26Q9P289 416 aa6.86□□□□□ -1.31
SCN1A-216ENST00000637968 SH3BP1Q9Y3L3 701 aa6.86□□□□□ -1.31
SCN1A-216ENST00000637968 CCDC88BA6NC98 1476 aa6.86□□□□□ -1.31
SCN1A-216ENST00000637968 MYBBP1AQ9BQG0 1328 aaKnown RBP6.86□□□□□ -1.31
SCN1A-216ENST00000637968 NEBLO76041 1014 aa6.86□□□□□ -1.31
SCN1A-216ENST00000637968 KDM2BQ8NHM5 1336 aa6.86□□□□□ -1.31
SCN1A-216ENST00000637968 E2F4Q16254 413 aa6.86□□□□□ -1.31
SCN1A-216ENST00000637968 UVSSAQ2YD98 709 aa6.86□□□□□ -1.31
SCN1A-216ENST00000637968 SYT10Q6XYQ8 523 aa6.86□□□□□ -1.31
SCN1A-216ENST00000637968 GBP6Q6ZN66 633 aa6.86□□□□□ -1.31
SCN1A-216ENST00000637968 RRBP1Q9P2E9 1410 aaKnown RBP6.85□□□□□ -1.31
SCN1A-216ENST00000637968 BAG4O95429 457 aaKnown RBP6.85□□□□□ -1.31
SCN1A-216ENST00000637968 ATP2B1P20020 1258 aa6.85□□□□□ -1.31
SCN1A-216ENST00000637968 NF2P35240 595 aa6.85□□□□□ -1.31
SCN1A-216ENST00000637968 FAM212AQ96EL1 285 aa6.85□□□□□ -1.31
SCN1A-216ENST00000637968 PDLIM2Q96JY6 352 aa6.85□□□□□ -1.31
SCN1A-216ENST00000637968 CTNNA3Q9UI47 895 aa6.85□□□□□ -1.31
SCN1A-216ENST00000637968 FKBP5Q13451 457 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-216ENST00000637968 KIF18AQ8NI77 898 aa6.85□□□□□ -1.31
SCN1A-216ENST00000637968 DDX11Q96FC9 970 aa6.85□□□□□ -1.31
SCN1A-216ENST00000637968 NPHP1O15259 732 aa6.85□□□□□ -1.31
SCN1A-216ENST00000637968 LMAN1P49257 510 aa6.85□□□□□ -1.31
SCN1A-216ENST00000637968 ANKRD7Q92527 254 aa6.85□□□□□ -1.31
SCN1A-216ENST00000637968 JARID2Q92833 1246 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-216ENST00000637968 TTC12Q9H892 705 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-216ENST00000637968 RRP15Q9Y3B9 282 aaKnown RBP6.85□□□□□ -1.31
SCN1A-216ENST00000637968 NLRP13Q86W25 1043 aa6.85□□□□□ -1.31
SCN1A-216ENST00000637968 CDCA7LQ96GN5 454 aa6.85□□□□□ -1.31
SCN1A-216ENST00000637968 ACBD3Q9H3P7 528 aa6.85□□□□□ -1.31
SCN1A-216ENST00000637968 SMC2O95347 1197 aa6.84□□□□□ -1.31
SCN1A-216ENST00000637968 SSFA2P28290 1259 aa6.84□□□□□ -1.31
SCN1A-216ENST00000637968 CCDC97Q96F63 343 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-216ENST00000637968 ERICH3Q5RHP9 1530 aa6.84□□□□□ -1.31
SCN1A-216ENST00000637968 TMCO5BA8MYB1 307 aa6.84□□□□□ -1.31
SCN1A-216ENST00000637968 K7ELQ4 463 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-216ENST00000637968 NOP2P46087 812 aaKnown RBP6.84□□□□□ -1.31
SCN1A-216ENST00000637968 BSDC1Q9NW68 430 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-216ENST00000637968 FANCD2Q9BXW9 1451 aa6.84□□□□□ -1.31
SCN1A-216ENST00000637968 PES1O00541 588 aaKnown RBP6.84□□□□□ -1.31
SCN1A-216ENST00000637968 CYP2C19P33261 490 aa6.84□□□□□ -1.31
SCN1A-216ENST00000637968 OTUD6BQ8N6M0 293 aa6.84□□□□□ -1.31
SCN1A-216ENST00000637968 NEK11Q8NG66 645 aa6.84□□□□□ -1.31
SCN1A-216ENST00000637968 FAM210AQ96ND0 272 aa6.84□□□□□ -1.31
SCN1A-216ENST00000637968 EIF4G1Q04637 1599 aaKnown RBP6.84□□□□□ -1.32
SCN1A-216ENST00000637968 BRD4O60885 1362 aaPredicted RBP6.84□□□□□ -1.32
SCN1A-216ENST00000637968 KIF15Q9NS87 1388 aa6.84□□□□□ -1.32
SCN1A-216ENST00000637968 SEC24BO95487 1268 aa6.83□□□□□ -1.32
SCN1A-216ENST00000637968 GOLGA2Q08379 1002 aa6.83□□□□□ -1.32
SCN1A-216ENST00000637968 CYB5RLQ6IPT4 315 aa6.83□□□□□ -1.32
SCN1A-216ENST00000637968 NBPF10Q6P3W6 841 aaKnown RBP6.83□□□□□ -1.32
SCN1A-216ENST00000637968 SIRT1Q96EB6 747 aa6.83□□□□□ -1.32
SCN1A-216ENST00000637968 TMEM132AQ24JP5 1023 aa6.83□□□□□ -1.32
SCN1A-216ENST00000637968 ARMCX6Q7L4S7 300 aa6.83□□□□□ -1.32
SCN1A-216ENST00000637968 SMC5Q8IY18 1101 aa6.83□□□□□ -1.32
SCN1A-216ENST00000637968 C16orf45Q96MC5 204 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-216ENST00000637968 PUS7Q96PZ0 661 aaKnown RBP6.83□□□□□ -1.32
SCN1A-216ENST00000637968 USP25Q9UHP3 1055 aa6.83□□□□□ -1.32
SCN1A-216ENST00000637968 CHIC2Q9UKJ5 165 aa6.83□□□□□ -1.32
SCN1A-216ENST00000637968 MAPKBP1O60336 1514 aa6.83□□□□□ -1.32
SCN1A-216ENST00000637968 TOP2AP11388 1531 aaKnown RBP6.83□□□□□ -1.32
SCN1A-216ENST00000637968 ADCY5O95622 1261 aa6.83□□□□□ -1.32
SCN1A-216ENST00000637968 MAGEA9P43362 315 aa6.83□□□□□ -1.32
SCN1A-216ENST00000637968 RGL3Q3MIN7 710 aa6.83□□□□□ -1.32
SCN1A-216ENST00000637968 GOLGA5Q8TBA6 731 aa6.83□□□□□ -1.32
SCN1A-216ENST00000637968 GTF3C6Q969F1 213 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms