RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 HAP1P54257 671 aaPredicted RBP27.43■■□□□ 1.98
CLN3-260ENST00000637578 PAK3O75914 559 aaPredicted RBP27.42■■□□□ 1.98
CLN3-260ENST00000637578 UNC5CLQ8IV45 518 aa27.42■■□□□ 1.98
CLN3-260ENST00000637578 PPIP5K1Q6PFW1 1433 aa27.42■■□□□ 1.98
CLN3-260ENST00000637578 CARD11Q9BXL7 1154 aa27.41■■□□□ 1.98
CLN3-260ENST00000637578 RGS12O14924 1447 aa27.41■■□□□ 1.98
CLN3-260ENST00000637578 SBNO2Q9Y2G9 1366 aa27.39■■□□□ 1.98
CLN3-260ENST00000637578 FAM83GA6ND36 823 aa27.39■■□□□ 1.97
CLN3-260ENST00000637578 PLEKHG5O94827 1062 aa27.39■■□□□ 1.97
CLN3-260ENST00000637578 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.39■■□□□ 1.97
CLN3-260ENST00000637578 GJD4Q96KN9 370 aaPredicted RBP27.37■■□□□ 1.97
CLN3-260ENST00000637578 CABP1Q9NZU7 370 aa27.37■■□□□ 1.97
CLN3-260ENST00000637578 CRYBG1Q9Y4K1 1723 aa27.36■■□□□ 1.97
CLN3-260ENST00000637578 BRD4O60885 1362 aaPredicted RBP27.35■■□□□ 1.97
CLN3-260ENST00000637578 CLSPNQ9HAW4 1339 aa27.34■■□□□ 1.97
CLN3-260ENST00000637578 NWD2Q9ULI1 1742 aa27.32■■□□□ 1.96
CLN3-260ENST00000637578 VPS72Q15906 364 aa27.31■■□□□ 1.96
CLN3-260ENST00000637578 UPF1Q92900 1129 aaKnown RBP eCLIP27.31■■□□□ 1.96
CLN3-260ENST00000637578 PLCH1Q4KWH8 1693 aa27.3■■□□□ 1.96
CLN3-260ENST00000637578 ABTB2Q8N961 1025 aa27.3■■□□□ 1.96
CLN3-260ENST00000637578 USP6P35125 1406 aa27.29■■□□□ 1.96
CLN3-260ENST00000637578 TIMELESSQ9UNS1 1208 aa27.29■■□□□ 1.96
CLN3-260ENST00000637578 ATAD2Q6PL18 1390 aa27.29■■□□□ 1.96
CLN3-260ENST00000637578 SSH2Q76I76 1423 aa27.28■■□□□ 1.96
CLN3-260ENST00000637578 NUTM2GQ5VZR2 741 aa27.28■■□□□ 1.96
CLN3-260ENST00000637578 USP19O94966 1318 aa27.27■■□□□ 1.96
CLN3-260ENST00000637578 GLI3P10071 1580 aa27.27■■□□□ 1.96
CLN3-260ENST00000637578 COL14A1Q05707 1796 aaKnown RBP27.27■■□□□ 1.96
CLN3-260ENST00000637578 ZNF692Q9BU19 519 aaPredicted RBP27.26■■□□□ 1.95
CLN3-260ENST00000637578 BTG4Q9NY30 223 aa27.26■■□□□ 1.95
CLN3-260ENST00000637578 NLRP13Q86W25 1043 aa27.24■■□□□ 1.95
CLN3-260ENST00000637578 PRDM11Q9NQV5 511 aa27.24■■□□□ 1.95
CLN3-260ENST00000637578 PHRF1Q9P1Y6 1649 aaKnown RBP27.24■■□□□ 1.95
CLN3-260ENST00000637578 CPSF1Q10570 1443 aaKnown RBP27.23■■□□□ 1.95
CLN3-260ENST00000637578 KIAA0232Q92628 1395 aa27.23■■□□□ 1.95
CLN3-260ENST00000637578 ONECUT3O60422 494 aaPredicted RBP27.23■■□□□ 1.95
CLN3-260ENST00000637578 CCER1Q8TC90 406 aaPredicted RBP27.23■■□□□ 1.95
CLN3-260ENST00000637578 PUS7Q96PZ0 661 aaKnown RBP27.22■■□□□ 1.95
CLN3-260ENST00000637578 TESK2Q96S53 571 aa27.22■■□□□ 1.95
CLN3-260ENST00000637578 NRAPQ86VF7 1730 aa27.22■■□□□ 1.95
CLN3-260ENST00000637578 ST20-MTHFSA0A0A6YYL1 179 aa27.2■■□□□ 1.94
CLN3-260ENST00000637578 CPDO75976 1380 aa27.2■■□□□ 1.94
CLN3-260ENST00000637578 ZC3H6P61129 1189 aaKnown RBP27.19■■□□□ 1.94
CLN3-260ENST00000637578 GCP02774 474 aa27.18■■□□□ 1.94
CLN3-260ENST00000637578 NRKQ7Z2Y5 1582 aa27.18■■□□□ 1.94
CLN3-260ENST00000637578 TTC21BQ7Z4L5 1316 aa27.17■■□□□ 1.94
CLN3-260ENST00000637578 NLRP6P59044 892 aa27.17■■□□□ 1.94
CLN3-260ENST00000637578 CHRNA2Q15822 529 aa27.17■■□□□ 1.94
CLN3-260ENST00000637578 AKAP12Q02952 1782 aa27.16■■□□□ 1.94
CLN3-260ENST00000637578 SLC24A1O60721 1099 aa27.16■■□□□ 1.94
CLN3-260ENST00000637578 CCDC9Q9Y3X0 531 aaKnown RBP27.16■■□□□ 1.94
CLN3-260ENST00000637578 SPATA31A5Q5VU36 1347 aa27.15■■□□□ 1.94
CLN3-260ENST00000637578 SPATA31A7Q8IWB4 1347 aa27.15■■□□□ 1.94
CLN3-260ENST00000637578 TTC21AQ8NDW8 1320 aa27.15■■□□□ 1.94
CLN3-260ENST00000637578 CD163L1Q9NR16 1453 aa27.14■■□□□ 1.94
CLN3-260ENST00000637578 SEPT12Q8IYM1 358 aa27.14■■□□□ 1.94
CLN3-260ENST00000637578 KTN1Q86UP2 1357 aaKnown RBP27.14■■□□□ 1.93
CLN3-260ENST00000637578 SLIT3O75094 1523 aa27.13■■□□□ 1.93
CLN3-260ENST00000637578 PIK3C2AO00443 1686 aa27.13■■□□□ 1.93
CLN3-260ENST00000637578 SLC12A5Q9H2X9 1139 aa27.12■■□□□ 1.93
CLN3-260ENST00000637578 USP47Q96K76 1375 aa27.11■■□□□ 1.93
CLN3-260ENST00000637578 LMO7Q8WWI1 1683 aa27.09■■□□□ 1.93
CLN3-260ENST00000637578 CAMTA1Q9Y6Y1 1673 aa27.09■■□□□ 1.93
CLN3-260ENST00000637578 TMC1Q8TDI8 760 aa27.09■■□□□ 1.93
CLN3-260ENST00000637578 SPATA31A1Q5TZJ5 1347 aa27.08■■□□□ 1.93
CLN3-260ENST00000637578 MON2Q7Z3U7 1717 aa27.08■■□□□ 1.92
CLN3-260ENST00000637578 FAM98CQ17RN3 349 aaKnown RBP27.07■■□□□ 1.92
CLN3-260ENST00000637578 EP400Q96L91 3159 aa27.07■■□□□ 1.92
CLN3-260ENST00000637578 STRN4Q9NRL3 753 aa27.06■■□□□ 1.92
CLN3-260ENST00000637578 NINLQ9Y2I6 1382 aa27.06■■□□□ 1.92
CLN3-260ENST00000637578 BRWD3Q6RI45 1802 aa27.06■■□□□ 1.92
CLN3-260ENST00000637578 HDGFL2Q7Z4V5 671 aaPredicted RBP27.05■■□□□ 1.92
CLN3-260ENST00000637578 TERF2IPQ9NYB0 399 aa27.05■■□□□ 1.92
CLN3-260ENST00000637578 AATKQ6ZMQ8 1374 aa27.05■■□□□ 1.92
CLN3-260ENST00000637578 CCDC125Q86Z20 511 aa27.05■■□□□ 1.92
CLN3-260ENST00000637578 USP31Q70CQ4 1352 aa27.05■■□□□ 1.92
CLN3-260ENST00000637578 KRT27Q7Z3Y8 459 aa27.04■■□□□ 1.92
CLN3-260ENST00000637578 KCNH5Q8NCM2 988 aa27.04■■□□□ 1.92
CLN3-260ENST00000637578 A0A1W2PP64 1363 aa27.03■■□□□ 1.92
CLN3-260ENST00000637578 EVA1CP58658 441 aa27.03■■□□□ 1.92
CLN3-260ENST00000637578 ARHGEF25Q86VW2 580 aa27.02■■□□□ 1.92
CLN3-260ENST00000637578 EDC4Q6P2E9 1401 aaKnown RBP27.02■■□□□ 1.92
CLN3-260ENST00000637578 TMF1P82094 1093 aa27.01■■□□□ 1.92
CLN3-260ENST00000637578 LARP1Q6PKG0 1096 aaKnown RBP27.01■■□□□ 1.92
CLN3-260ENST00000637578 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.01■■□□□ 1.92
CLN3-260ENST00000637578 COL5A2P05997 1499 aaPredicted RBP27■■□□□ 1.91
CLN3-260ENST00000637578 BARGINQ6ZT62 677 aa27■■□□□ 1.91
CLN3-260ENST00000637578 THSD7AQ9UPZ6 1657 aa27■■□□□ 1.91
CLN3-260ENST00000637578 ZRANB1Q9UGI0 708 aa26.99■■□□□ 1.91
CLN3-260ENST00000637578 NME9Q86XW9 330 aa26.98■■□□□ 1.91
CLN3-260ENST00000637578 COL18A1P39060 1754 aa26.98■■□□□ 1.91
CLN3-260ENST00000637578 USP54Q70EL1 1684 aa26.98■■□□□ 1.91
CLN3-260ENST00000637578 A0A0G2JS52 829 aa26.97■■□□□ 1.91
CLN3-260ENST00000637578 MYT1Q01538 1121 aa26.97■■□□□ 1.91
CLN3-260ENST00000637578 NFAT5O94916 1531 aa26.97■■□□□ 1.91
CLN3-260ENST00000637578 AXIN2Q9Y2T1 843 aa26.97■■□□□ 1.91
CLN3-260ENST00000637578 BLMP54132 1417 aaPredicted RBP26.95■■□□□ 1.91
CLN3-260ENST00000637578 TCP11L2Q8N4U5 519 aa26.95■■□□□ 1.9
CLN3-260ENST00000637578 THRAP3Q9Y2W1 955 aaKnown RBP26.95■■□□□ 1.9
CLN3-260ENST00000637578 CDCA8Q53HL2 280 aa26.94■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms