RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 MTHFSP49914 203 aa27.06■■□□□ 1.92
CLN3-250ENST00000636839 CENPBP07199 599 aaPredicted RBP27.04■■□□□ 1.92
CLN3-250ENST00000636839 KIF20BQ96Q89 1820 aa27.04■■□□□ 1.92
CLN3-250ENST00000636839 SSH2Q76I76 1423 aa27.03■■□□□ 1.92
CLN3-250ENST00000636839 LRRC7Q96NW7 1537 aa27.01■■□□□ 1.91
CLN3-250ENST00000636839 ATF3P18847 181 aa27■■□□□ 1.91
CLN3-250ENST00000636839 NRKQ7Z2Y5 1582 aa27■■□□□ 1.91
CLN3-250ENST00000636839 DMRT2Q9Y5R5 561 aa27■■□□□ 1.91
CLN3-250ENST00000636839 ADAMTS8Q9UP79 889 aa26.99■■□□□ 1.91
CLN3-250ENST00000636839 ANKRD26Q9UPS8 1709 aa26.99■■□□□ 1.91
CLN3-250ENST00000636839 XIRP1Q702N8 1843 aaKnown RBP26.98■■□□□ 1.91
CLN3-250ENST00000636839 C1orf167Q5SNV9 1468 aa26.98■■□□□ 1.91
CLN3-250ENST00000636839 FOXO3O43524 673 aa26.97■■□□□ 1.91
CLN3-250ENST00000636839 XPCQ01831 940 aaPredicted RBP26.97■■□□□ 1.91
CLN3-250ENST00000636839 COG3Q96JB2 828 aa26.97■■□□□ 1.91
CLN3-250ENST00000636839 NCOA3Q9Y6Q9 1424 aa26.97■■□□□ 1.91
CLN3-250ENST00000636839 NUTM2GQ5VZR2 741 aa26.95■■□□□ 1.91
CLN3-250ENST00000636839 PAK3O75914 559 aaPredicted RBP26.95■■□□□ 1.9
CLN3-250ENST00000636839 MST1RQ04912 1400 aa26.95■■□□□ 1.9
CLN3-250ENST00000636839 MSH6P52701 1360 aa26.94■■□□□ 1.9
CLN3-250ENST00000636839 PSME1Q06323 249 aa26.94■■□□□ 1.9
CLN3-250ENST00000636839 POLKQ9UBT6 870 aa26.94■■□□□ 1.9
CLN3-250ENST00000636839 PPM1GO15355 546 aaPredicted RBP26.92■■□□□ 1.9
CLN3-250ENST00000636839 WDR43Q15061 677 aaKnown RBP eCLIP26.92■■□□□ 1.9
CLN3-250ENST00000636839 CADPS2Q86UW7 1296 aa26.92■■□□□ 1.9
CLN3-250ENST00000636839 DDX17Q92841 729 aaKnown RBP26.92■■□□□ 1.9
CLN3-250ENST00000636839 SOX12O15370 315 aa26.92■■□□□ 1.9
CLN3-250ENST00000636839 TTC21AQ8NDW8 1320 aa26.91■■□□□ 1.9
CLN3-250ENST00000636839 RRS1Q15050 365 aaKnown RBP26.91■■□□□ 1.9
CLN3-250ENST00000636839 EMILIN1Q9Y6C2 1016 aa26.91■■□□□ 1.9
CLN3-250ENST00000636839 DCCP43146 1447 aa26.9■■□□□ 1.9
CLN3-250ENST00000636839 OVOS2A0A0J9YW53 1432 aa26.89■■□□□ 1.9
CLN3-250ENST00000636839 OVOS2Q6IE36 1432 aa26.89■■□□□ 1.9
CLN3-250ENST00000636839 ABTB2Q8N961 1025 aa26.89■■□□□ 1.89
CLN3-250ENST00000636839 SCAF1Q9H7N4 1312 aaKnown RBP26.88■■□□□ 1.89
CLN3-250ENST00000636839 PIK3C2AO00443 1686 aa26.87■■□□□ 1.89
CLN3-250ENST00000636839 NLRP6P59044 892 aa26.87■■□□□ 1.89
CLN3-250ENST00000636839 CFAP53Q96M91 514 aa26.87■■□□□ 1.89
CLN3-250ENST00000636839 SALL2Q9Y467 1007 aaPredicted RBP26.87■■□□□ 1.89
CLN3-250ENST00000636839 CCDC146Q8IYE0 955 aa26.86■■□□□ 1.89
CLN3-250ENST00000636839 MAP2P11137 1827 aaKnown RBP26.84■■□□□ 1.89
CLN3-250ENST00000636839 SHPRHQ149N8 1683 aa26.84■■□□□ 1.89
CLN3-250ENST00000636839 KRT28Q7Z3Y7 464 aa26.83■■□□□ 1.89
CLN3-250ENST00000636839 AATKQ6ZMQ8 1374 aa26.83■■□□□ 1.89
CLN3-250ENST00000636839 USP31Q70CQ4 1352 aa26.83■■□□□ 1.89
CLN3-250ENST00000636839 BLMP54132 1417 aaPredicted RBP26.83■■□□□ 1.89
CLN3-250ENST00000636839 PLEKHG5O94827 1062 aa26.82■■□□□ 1.88
CLN3-250ENST00000636839 COL3A1P02461 1466 aaPredicted RBP26.82■■□□□ 1.88
CLN3-250ENST00000636839 SLAIN2Q9P270 581 aa26.82■■□□□ 1.88
CLN3-250ENST00000636839 ZBED9Q6R2W3 1325 aa26.82■■□□□ 1.88
CLN3-250ENST00000636839 PNPLA6Q8IY17 1366 aa26.81■■□□□ 1.88
CLN3-250ENST00000636839 BRINP3Q76B58 766 aa26.79■■□□□ 1.88
CLN3-250ENST00000636839 LMOD2Q6P5Q4 547 aa26.78■■□□□ 1.88
CLN3-250ENST00000636839 U2SURPO15042 1029 aaKnown RBP26.77■■□□□ 1.88
CLN3-250ENST00000636839 U2AF1L5P0DN76 240 aaPredicted RBP26.77■■□□□ 1.88
CLN3-250ENST00000636839 U2AF1Q01081 240 aaKnown RBP eCLIP26.77■■□□□ 1.88
CLN3-250ENST00000636839 MARF1Q9Y4F3 1742 aaKnown RBP26.77■■□□□ 1.88
CLN3-250ENST00000636839 DIAPH1O60610 1272 aaKnown RBP26.77■■□□□ 1.88
CLN3-250ENST00000636839 KIF1AQ12756 1690 aa26.76■■□□□ 1.87
CLN3-250ENST00000636839 SMG6Q86US8 1419 aaKnown RBP26.75■■□□□ 1.87
CLN3-250ENST00000636839 INSRP06213 1382 aa26.75■■□□□ 1.87
CLN3-250ENST00000636839 MAP3K19Q56UN5 1328 aa26.75■■□□□ 1.87
CLN3-250ENST00000636839 LTBP4Q8N2S1 1624 aa26.74■■□□□ 1.87
CLN3-250ENST00000636839 HSP90AB2PQ58FF8 381 aa26.73■■□□□ 1.87
CLN3-250ENST00000636839 AEBP2Q6ZN18 517 aaPredicted RBP26.73■■□□□ 1.87
CLN3-250ENST00000636839 TRPM3Q9HCF6 1732 aaPredicted RBP26.72■■□□□ 1.87
CLN3-250ENST00000636839 APAF1O14727 1248 aa26.72■■□□□ 1.87
CLN3-250ENST00000636839 CDK12Q9NYV4 1490 aaPredicted RBP26.71■■□□□ 1.87
CLN3-250ENST00000636839 IL13P35225 146 aa26.71■■□□□ 1.87
CLN3-250ENST00000636839 NUDCQ9Y266 331 aa26.71■■□□□ 1.87
CLN3-250ENST00000636839 PEAK1Q9H792 1746 aa26.71■■□□□ 1.87
CLN3-250ENST00000636839 NPHP3Q7Z494 1330 aa26.7■■□□□ 1.86
CLN3-250ENST00000636839 PXDNQ92626 1479 aa26.66■■□□□ 1.86
CLN3-250ENST00000636839 USP54Q70EL1 1684 aa26.66■■□□□ 1.86
CLN3-250ENST00000636839 AMPHP49418 695 aa26.66■■□□□ 1.86
CLN3-250ENST00000636839 EIF4A2Q14240 407 aaKnown RBP26.66■■□□□ 1.86
CLN3-250ENST00000636839 HMOX1P09601 288 aa26.65■■□□□ 1.86
CLN3-250ENST00000636839 RUNDC1Q96C34 613 aa26.65■■□□□ 1.86
CLN3-250ENST00000636839 RRP7AQ9Y3A4 280 aaKnown RBP26.65■■□□□ 1.86
CLN3-250ENST00000636839 GCP02774 474 aa26.64■■□□□ 1.86
CLN3-250ENST00000636839 ZBTB7CA1YPR0 619 aa26.63■■□□□ 1.85
CLN3-250ENST00000636839 PLEKHF1Q96S99 279 aa26.63■■□□□ 1.85
CLN3-250ENST00000636839 NEUROD2Q15784 382 aa26.63■■□□□ 1.85
CLN3-250ENST00000636839 CABLES1Q8TDN4 633 aa26.63■■□□□ 1.85
CLN3-250ENST00000636839 CDCA7LQ96GN5 454 aa26.63■■□□□ 1.85
CLN3-250ENST00000636839 SBNO1A3KN83 1393 aa26.62■■□□□ 1.85
CLN3-250ENST00000636839 TCP11L2Q8N4U5 519 aa26.62■■□□□ 1.85
CLN3-250ENST00000636839 NFAT5O94916 1531 aa26.62■■□□□ 1.85
CLN3-250ENST00000636839 ALS2Q96Q42 1657 aa26.61■■□□□ 1.85
CLN3-250ENST00000636839 SPATA31A3Q5VYP0 1347 aa26.61■■□□□ 1.85
CLN3-250ENST00000636839 HOXC9P31274 260 aa26.61■■□□□ 1.85
CLN3-250ENST00000636839 FLT4P35916 1363 aa26.61■■□□□ 1.85
CLN3-250ENST00000636839 USP19O94966 1318 aa26.6■■□□□ 1.85
CLN3-250ENST00000636839 KCNH5Q8NCM2 988 aa26.59■■□□□ 1.85
CLN3-250ENST00000636839 RSPH6AQ9H0K4 717 aa26.59■■□□□ 1.85
CLN3-250ENST00000636839 SOS2Q07890 1332 aaPredicted RBP26.59■■□□□ 1.85
CLN3-250ENST00000636839 TNS3Q68CZ2 1445 aa26.58■■□□□ 1.85
CLN3-250ENST00000636839 AEBP1Q8IUX7 1158 aa26.58■■□□□ 1.85
CLN3-250ENST00000636839 MED1Q15648 1581 aaPredicted RBP26.58■■□□□ 1.84
CLN3-250ENST00000636839 PRKAR2BP31323 418 aa26.57■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms