RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 LMOD2Q6P5Q4 547 aa26.51■■□□□ 1.83
SQSTM1-216ENST00000626660 PNPLA6Q8IY17 1366 aa26.5■■□□□ 1.83
SQSTM1-216ENST00000626660 MYOM1P52179 1685 aa26.5■■□□□ 1.83
SQSTM1-216ENST00000626660 ARHGEF10O15013 1369 aa26.49■■□□□ 1.83
SQSTM1-216ENST00000626660 MON2Q7Z3U7 1717 aa26.49■■□□□ 1.83
SQSTM1-216ENST00000626660 C11orf95C9JLR9 678 aaPredicted RBP26.49■■□□□ 1.83
SQSTM1-216ENST00000626660 CD163L1Q9NR16 1453 aa26.48■■□□□ 1.83
SQSTM1-216ENST00000626660 ALS2Q96Q42 1657 aa26.47■■□□□ 1.83
SQSTM1-216ENST00000626660 A0A1W2PP64 1363 aa26.46■■□□□ 1.83
SQSTM1-216ENST00000626660 ANKRD36BQ8N2N9 1353 aa26.46■■□□□ 1.83
SQSTM1-216ENST00000626660 KIF7Q2M1P5 1343 aa26.46■■□□□ 1.83
SQSTM1-216ENST00000626660 RGS17Q9UGC6 210 aaPredicted RBP26.46■■□□□ 1.83
SQSTM1-216ENST00000626660 SPATA31A6Q5VVP1 1343 aa26.45■■□□□ 1.83
SQSTM1-216ENST00000626660 COL22A1Q8NFW1 1626 aaPredicted RBP26.44■■□□□ 1.82
SQSTM1-216ENST00000626660 TTC21AQ8NDW8 1320 aa26.42■■□□□ 1.82
SQSTM1-216ENST00000626660 NRKQ7Z2Y5 1582 aa26.42■■□□□ 1.82
SQSTM1-216ENST00000626660 EDC4Q6P2E9 1401 aaKnown RBP26.42■■□□□ 1.82
SQSTM1-216ENST00000626660 CCDC7Q96M83 1385 aa26.42■■□□□ 1.82
SQSTM1-216ENST00000626660 TTC21BQ7Z4L5 1316 aa26.41■■□□□ 1.82
SQSTM1-216ENST00000626660 SSH2Q76I76 1423 aa26.41■■□□□ 1.82
SQSTM1-216ENST00000626660 ABTB2Q8N961 1025 aa26.41■■□□□ 1.82
SQSTM1-216ENST00000626660 NUTM2BA6NNL0 878 aaPredicted RBP26.39■■□□□ 1.82
SQSTM1-216ENST00000626660 NUTM2EB1AL46 878 aaPredicted RBP26.39■■□□□ 1.82
SQSTM1-216ENST00000626660 NUTM2AQ8IVF1 878 aaPredicted RBP26.39■■□□□ 1.82
SQSTM1-216ENST00000626660 WASHC2AQ641Q2 1341 aa26.39■■□□□ 1.81
SQSTM1-216ENST00000626660 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.38■■□□□ 1.81
SQSTM1-216ENST00000626660 PLEKHG5O94827 1062 aa26.37■■□□□ 1.81
SQSTM1-216ENST00000626660 HAP1P54257 671 aaPredicted RBP26.37■■□□□ 1.81
SQSTM1-216ENST00000626660 NUTM2GQ5VZR2 741 aa26.36■■□□□ 1.81
SQSTM1-216ENST00000626660 NLRP13Q86W25 1043 aa26.36■■□□□ 1.81
SQSTM1-216ENST00000626660 PIK3C2AO00443 1686 aa26.35■■□□□ 1.81
SQSTM1-216ENST00000626660 NLRP6P59044 892 aa26.34■■□□□ 1.81
SQSTM1-216ENST00000626660 POTEAQ6S8J7 498 aa26.34■■□□□ 1.81
SQSTM1-216ENST00000626660 MEX3CQ5U5Q3 659 aaKnown RBP26.33■■□□□ 1.81
SQSTM1-216ENST00000626660 CABLES1Q8TDN4 633 aa26.33■■□□□ 1.81
SQSTM1-216ENST00000626660 ABCA3Q99758 1704 aa26.33■■□□□ 1.81
SQSTM1-216ENST00000626660 PANK3Q9H999 370 aa26.32■■□□□ 1.8
SQSTM1-216ENST00000626660 LRP6O75581 1613 aa26.32■■□□□ 1.8
SQSTM1-216ENST00000626660 NSD3Q9BZ95 1437 aa26.31■■□□□ 1.8
SQSTM1-216ENST00000626660 CRYBG1Q9Y4K1 1723 aa26.31■■□□□ 1.8
SQSTM1-216ENST00000626660 NME9Q86XW9 330 aa26.3■■□□□ 1.8
SQSTM1-216ENST00000626660 CARD14Q9BXL6 1004 aa26.3■■□□□ 1.8
SQSTM1-216ENST00000626660 ADAMTS2O95450 1211 aa26.29■■□□□ 1.8
SQSTM1-216ENST00000626660 USP19O94966 1318 aa26.29■■□□□ 1.8
SQSTM1-216ENST00000626660 PHRF1Q9P1Y6 1649 aaKnown RBP26.28■■□□□ 1.8
SQSTM1-216ENST00000626660 KIF20BQ96Q89 1820 aa26.28■■□□□ 1.8
SQSTM1-216ENST00000626660 USP31Q70CQ4 1352 aa26.27■■□□□ 1.8
SQSTM1-216ENST00000626660 MARF1Q9Y4F3 1742 aaKnown RBP26.27■■□□□ 1.8
SQSTM1-216ENST00000626660 USP54Q70EL1 1684 aa26.26■■□□□ 1.79
SQSTM1-216ENST00000626660 CGNL1Q0VF96 1302 aa26.26■■□□□ 1.79
SQSTM1-216ENST00000626660 COG3Q96JB2 828 aa26.24■■□□□ 1.79
SQSTM1-216ENST00000626660 ZRANB1Q9UGI0 708 aa26.24■■□□□ 1.79
SQSTM1-216ENST00000626660 KNSTRNQ9Y448 316 aa26.24■■□□□ 1.79
SQSTM1-216ENST00000626660 SLIT3O75094 1523 aa26.24■■□□□ 1.79
SQSTM1-216ENST00000626660 FYB1O15117 783 aa26.22■■□□□ 1.79
SQSTM1-216ENST00000626660 GCP02774 474 aa26.22■■□□□ 1.79
SQSTM1-216ENST00000626660 KCNH5Q8NCM2 988 aa26.22■■□□□ 1.79
SQSTM1-216ENST00000626660 OVOS2A0A0J9YW53 1432 aa26.22■■□□□ 1.79
SQSTM1-216ENST00000626660 OVOS2Q6IE36 1432 aa26.22■■□□□ 1.79
SQSTM1-216ENST00000626660 C8orf37Q96NL8 207 aa26.21■■□□□ 1.79
SQSTM1-216ENST00000626660 GGNBP2Q9H3C7 697 aa26.21■■□□□ 1.79
SQSTM1-216ENST00000626660 NGLY1Q96IV0 654 aa26.2■■□□□ 1.78
SQSTM1-216ENST00000626660 SOX12O15370 315 aa26.18■■□□□ 1.78
SQSTM1-216ENST00000626660 ZC3H6P61129 1189 aaKnown RBP26.18■■□□□ 1.78
SQSTM1-216ENST00000626660 PRDM11Q9NQV5 511 aa26.18■■□□□ 1.78
SQSTM1-216ENST00000626660 ZNF316A6NFI3 1004 aaPredicted RBP26.17■■□□□ 1.78
SQSTM1-216ENST00000626660 NSD2O96028 1365 aa26.17■■□□□ 1.78
SQSTM1-216ENST00000626660 CPDO75976 1380 aa26.16■■□□□ 1.78
SQSTM1-216ENST00000626660 KIAA0232Q92628 1395 aa26.16■■□□□ 1.78
SQSTM1-216ENST00000626660 ANKRD26Q9UPS8 1709 aa26.15■■□□□ 1.78
SQSTM1-216ENST00000626660 COL14A1Q05707 1796 aaKnown RBP26.15■■□□□ 1.78
SQSTM1-216ENST00000626660 NFAT5O94916 1531 aa26.14■■□□□ 1.77
SQSTM1-216ENST00000626660 AFF2P51816 1311 aa26.14■■□□□ 1.77
SQSTM1-216ENST00000626660 ZBTB7CA1YPR0 619 aa26.13■■□□□ 1.77
SQSTM1-216ENST00000626660 PLCH1Q4KWH8 1693 aa26.12■■□□□ 1.77
SQSTM1-216ENST00000626660 FAM83GA6ND36 823 aa26.12■■□□□ 1.77
SQSTM1-216ENST00000626660 PER1O15534 1290 aaPredicted RBP26.12■■□□□ 1.77
SQSTM1-216ENST00000626660 ZNF772Q68DY9 489 aaPredicted RBP26.11■■□□□ 1.77
SQSTM1-216ENST00000626660 CHRNA2Q15822 529 aa26.1■■□□□ 1.77
SQSTM1-216ENST00000626660 FNBP4Q8N3X1 1017 aaPredicted RBP26.1■■□□□ 1.77
SQSTM1-216ENST00000626660 NWD2Q9ULI1 1742 aa26.1■■□□□ 1.77
SQSTM1-216ENST00000626660 DDX10Q13206 875 aaKnown RBP26.09■■□□□ 1.77
SQSTM1-216ENST00000626660 AMER1Q5JTC6 1135 aaPredicted RBP26.09■■□□□ 1.77
SQSTM1-216ENST00000626660 LTN1O94822 1766 aa26.08■■□□□ 1.77
SQSTM1-216ENST00000626660 ARHGEF25Q86VW2 580 aa26.08■■□□□ 1.77
SQSTM1-216ENST00000626660 USP21Q9UK80 565 aa26.08■■□□□ 1.77
SQSTM1-216ENST00000626660 SLIT2O94813 1529 aa26.08■■□□□ 1.77
SQSTM1-216ENST00000626660 MORC1Q86VD1 984 aa26.07■■□□□ 1.76
SQSTM1-216ENST00000626660 AATKQ6ZMQ8 1374 aa26.07■■□□□ 1.76
SQSTM1-216ENST00000626660 BTG4Q9NY30 223 aa26.06■■□□□ 1.76
SQSTM1-216ENST00000626660 NPC1L1Q9UHC9 1359 aa26.06■■□□□ 1.76
SQSTM1-216ENST00000626660 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.05■■□□□ 1.76
SQSTM1-216ENST00000626660 CC2D1BQ5T0F9 858 aaKnown RBP26.04■■□□□ 1.76
SQSTM1-216ENST00000626660 UNC5CLQ8IV45 518 aa26.04■■□□□ 1.76
SQSTM1-216ENST00000626660 ABCC6O95255 1503 aa26.04■■□□□ 1.76
SQSTM1-216ENST00000626660 LMO7Q8WWI1 1683 aa26.03■■□□□ 1.76
SQSTM1-216ENST00000626660 COL18A1P39060 1754 aa26.02■■□□□ 1.76
SQSTM1-216ENST00000626660 BCL9LQ86UU0 1499 aa26.02■■□□□ 1.76
SQSTM1-216ENST00000626660 FBLN1P23142 703 aa26.01■■□□□ 1.75
SQSTM1-216ENST00000626660 TNNT2P45379 298 aaPredicted RBP26.01■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms