RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 HSP90AB3PQ58FF7 597 aa10.61□□□□□ -0.71
VCL-206ENST00000623461 EFCAB5A4FU69 1503 aa10.61□□□□□ -0.71
VCL-206ENST00000623461 ANKRD1Q15327 319 aa10.6□□□□□ -0.71
VCL-206ENST00000623461 TBC1D2Q9BYX2 928 aa10.6□□□□□ -0.71
VCL-206ENST00000623461 TOMM22Q9NS69 142 aa10.6□□□□□ -0.71
VCL-206ENST00000623461 SMAP1Q8IYB5 467 aaPredicted RBP10.6□□□□□ -0.71
VCL-206ENST00000623461 GIMAP7Q8NHV1 300 aa10.6□□□□□ -0.71
VCL-206ENST00000623461 PTPN14Q15678 1187 aa10.6□□□□□ -0.71
VCL-206ENST00000623461 CCDC183Q5T5S1 534 aa10.6□□□□□ -0.71
VCL-206ENST00000623461 TCP11L2Q8N4U5 519 aa10.6□□□□□ -0.71
VCL-206ENST00000623461 CASKIN1Q8WXD9 1431 aa10.6□□□□□ -0.71
VCL-206ENST00000623461 GOLGA6L7A0A1B0GV03 622 aa10.6□□□□□ -0.71
VCL-206ENST00000623461 PIP4K2AP48426 406 aaPredicted RBP10.6□□□□□ -0.71
VCL-206ENST00000623461 TRDNQ13061 729 aa10.6□□□□□ -0.71
VCL-206ENST00000623461 NUP62CLQ9H1M0 184 aa10.6□□□□□ -0.71
VCL-206ENST00000623461 PLEKHH1Q9ULM0 1364 aa10.6□□□□□ -0.71
VCL-206ENST00000623461 HS1BP3Q53T59 392 aa10.59□□□□□ -0.71
VCL-206ENST00000623461 KIF18AQ8NI77 898 aa10.59□□□□□ -0.71
VCL-206ENST00000623461 NEMFO60524 1076 aa10.59□□□□□ -0.71
VCL-206ENST00000623461 COG3Q96JB2 828 aa10.59□□□□□ -0.71
VCL-206ENST00000623461 TNPO1Q92973 898 aaKnown RBP10.59□□□□□ -0.71
VCL-206ENST00000623461 DACH1Q9UI36 760 aa10.59□□□□□ -0.71
VCL-206ENST00000623461 CC2D2AQ9P2K1 1620 aa10.59□□□□□ -0.71
VCL-206ENST00000623461 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.59□□□□□ -0.71
VCL-206ENST00000623461 G3BP1Q13283 466 aaKnown RBP eCLIP10.59□□□□□ -0.713e-6■■■□□ 19
VCL-206ENST00000623461 TOP2BQ02880 1626 aa10.59□□□□□ -0.71
VCL-206ENST00000623461 GGT6Q6P531 493 aa10.59□□□□□ -0.71
VCL-206ENST00000623461 ZSCAN31Q96LW9 406 aaPredicted RBP10.59□□□□□ -0.71
VCL-206ENST00000623461 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.58□□□□□ -0.726e-7■■■■□ 23.3
VCL-206ENST00000623461 SLFN5Q08AF3 891 aa10.58□□□□□ -0.72
VCL-206ENST00000623461 C9orf78Q9NZ63 289 aaPredicted RBP10.58□□□□□ -0.72
VCL-206ENST00000623461 HFM1A2PYH4 1435 aa10.58□□□□□ -0.72
VCL-206ENST00000623461 MARCH6O60337 910 aa10.58□□□□□ -0.72
VCL-206ENST00000623461 AMPHP49418 695 aa10.58□□□□□ -0.72
VCL-206ENST00000623461 IQCEQ6IPM2 695 aa10.58□□□□□ -0.72
VCL-206ENST00000623461 DHX29Q7Z478 1369 aaKnown RBP10.58□□□□□ -0.72
VCL-206ENST00000623461 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.58□□□□□ -0.72
VCL-206ENST00000623461 GOLGA6L10A6NI86 522 aa10.58□□□□□ -0.72
VCL-206ENST00000623461 GNAI3P08754 354 aa10.58□□□□□ -0.72
VCL-206ENST00000623461 ZRSR2Q15696 482 aaKnown RBP10.58□□□□□ -0.72
VCL-206ENST00000623461 NAP1L1P55209 391 aaKnown RBP10.58□□□□□ -0.72
VCL-206ENST00000623461 XRCC6P12956 609 aaKnown RBP eCLIP10.58□□□□□ -0.722e-6■□□□□ 9.4
VCL-206ENST00000623461 MAP3K11Q16584 847 aa10.58□□□□□ -0.72
VCL-206ENST00000623461 KLHL40Q2TBA0 621 aa10.58□□□□□ -0.72
VCL-206ENST00000623461 KIF3BO15066 747 aa10.57□□□□□ -0.72
VCL-206ENST00000623461 SERPINC1P01008 464 aa10.57□□□□□ -0.72
VCL-206ENST00000623461 PAXBP1Q9Y5B6 917 aa10.57□□□□□ -0.72
VCL-206ENST00000623461 NOL10Q9BSC4 688 aaKnown RBP10.57□□□□□ -0.72
VCL-206ENST00000623461 CCDC94Q9BW85 323 aaPredicted RBP10.57□□□□□ -0.72
VCL-206ENST00000623461 NOB1Q9ULX3 412 aaKnown RBP10.57□□□□□ -0.72
VCL-206ENST00000623461 ATF7IPQ6VMQ6 1270 aa10.57□□□□□ -0.72
VCL-206ENST00000623461 SMTNL1A8MU46 457 aa10.57□□□□□ -0.72
VCL-206ENST00000623461 BBXQ8WY36 941 aaPredicted RBP10.57□□□□□ -0.72
VCL-206ENST00000623461 CEP57L1Q8IYX8 460 aa10.57□□□□□ -0.72
VCL-206ENST00000623461 NCOA2Q15596 1464 aa10.57□□□□□ -0.72
VCL-206ENST00000623461 NEXNQ0ZGT2 675 aa10.57□□□□□ -0.72
VCL-206ENST00000623461 BMS1Q14692 1282 aaKnown RBP10.57□□□□□ -0.72
VCL-206ENST00000623461 DDX11Q96FC9 970 aa10.57□□□□□ -0.72
VCL-206ENST00000623461 SRCIN1Q9C0H9 1055 aa10.56□□□□□ -0.72
VCL-206ENST00000623461 CYP46A1Q9Y6A2 500 aa10.56□□□□□ -0.72
VCL-206ENST00000623461 EXOSC9Q06265 439 aaKnown RBP10.56□□□□□ -0.72
VCL-206ENST00000623461 FKBP5Q13451 457 aaPredicted RBP10.56□□□□□ -0.72
VCL-206ENST00000623461 TXLNBQ8N3L3 684 aa10.56□□□□□ -0.72
VCL-206ENST00000623461 JMYQ8N9B5 988 aa10.56□□□□□ -0.72
VCL-206ENST00000623461 CFAP45Q9UL16 551 aa10.56□□□□□ -0.72
VCL-206ENST00000623461 MCM3P25205 808 aa10.56□□□□□ -0.72
VCL-206ENST00000623461 PPFIBP1Q86W92 1011 aa10.56□□□□□ -0.72
VCL-206ENST00000623461 ZNF428Q96B54 188 aa10.56□□□□□ -0.72
VCL-206ENST00000623461 OFD1O75665 1012 aa10.56□□□□□ -0.72
VCL-206ENST00000623461 VGFO15240 615 aaPredicted RBP10.55□□□□□ -0.72
VCL-206ENST00000623461 MPNDQ8N594 471 aa10.55□□□□□ -0.72
VCL-206ENST00000623461 SHTN1A0MZ66 631 aa10.55□□□□□ -0.72
VCL-206ENST00000623461 TNNT1P13805 278 aa10.55□□□□□ -0.72
VCL-206ENST00000623461 LRRCC1Q9C099 1032 aa10.55□□□□□ -0.72
VCL-206ENST00000623461 ARAP1Q96P48 1450 aa10.55□□□□□ -0.72
VCL-206ENST00000623461 DHX16O60231 1041 aaKnown RBP10.55□□□□□ -0.72
VCL-206ENST00000623461 KRT222Q8N1A0 295 aa10.55□□□□□ -0.72
VCL-206ENST00000623461 TBC1D32Q96NH3 1257 aa10.55□□□□□ -0.72
VCL-206ENST00000623461 ZSCAN12O43309 604 aa10.55□□□□□ -0.72
VCL-206ENST00000623461 DDX58O95786 925 aaKnown RBP10.55□□□□□ -0.72
VCL-206ENST00000623461 CCDC102AQ96A19 550 aa10.55□□□□□ -0.72
VCL-206ENST00000623461 ATAD2BQ9ULI0 1458 aa10.55□□□□□ -0.72
VCL-206ENST00000623461 PPP6R1Q9UPN7 881 aa10.55□□□□□ -0.72
VCL-206ENST00000623461 ERLIN2O94905 339 aa10.54□□□□□ -0.72
VCL-206ENST00000623461 UBTFL1P0CB47 393 aaPredicted RBP10.54□□□□□ -0.72
VCL-206ENST00000623461 SPATA32Q96LK8 384 aa10.54□□□□□ -0.72
VCL-206ENST00000623461 SUPT6HQ7KZ85 1726 aaKnown RBP10.54□□□□□ -0.72
VCL-206ENST00000623461 POTEB2H3BUK9 544 aa10.54□□□□□ -0.72
VCL-206ENST00000623461 STK38Q15208 465 aa10.54□□□□□ -0.72
VCL-206ENST00000623461 INCENPQ9NQS7 918 aa10.54□□□□□ -0.72
VCL-206ENST00000623461 MAP9Q49MG5 647 aa10.54□□□□□ -0.72
VCL-206ENST00000623461 NKTRP30414 1462 aaKnown RBP10.54□□□□□ -0.72
VCL-206ENST00000623461 LARP1BQ659C4 914 aaKnown RBP10.54□□□□□ -0.72
VCL-206ENST00000623461 POLA1P09884 1462 aaPredicted RBP10.54□□□□□ -0.72
VCL-206ENST00000623461 NFXL1Q6ZNB6 911 aa10.54□□□□□ -0.72
VCL-206ENST00000623461 BIVM-ERCC5R4GMW8 1640 aa10.54□□□□□ -0.72
VCL-206ENST00000623461 ERICH2A1L162 156 aa10.53□□□□□ -0.72
VCL-206ENST00000623461 G3V3G9 751 aa10.53□□□□□ -0.72
VCL-206ENST00000623461 DCAF8Q5TAQ9 597 aa10.53□□□□□ -0.72
VCL-206ENST00000623461 FMNL2Q96PY5 1086 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms