RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 PAK3O75914 559 aaPredicted RBP34.71■■■■□ 3.15
CPSF1-214ENST00000622776 A0A0G2JS52 829 aa34.7■■■■□ 3.15
CPSF1-214ENST00000622776 MYT1Q01538 1121 aa34.7■■■■□ 3.15
CPSF1-214ENST00000622776 NUDT16Q96DE0 195 aaKnown RBP34.7■■■■□ 3.15
CPSF1-214ENST00000622776 NRAPQ86VF7 1730 aa34.69■■■■□ 3.14
CPSF1-214ENST00000622776 FAM98CQ17RN3 349 aaKnown RBP34.69■■■■□ 3.14
CPSF1-214ENST00000622776 ARHGEF28Q8N1W1 1705 aaKnown RBP34.69■■■■□ 3.14
CPSF1-214ENST00000622776 COL14A1Q05707 1796 aaKnown RBP34.68■■■■□ 3.14
CPSF1-214ENST00000622776 ATP7BP35670 1465 aa34.66■■■■□ 3.14
CPSF1-214ENST00000622776 PRDM11Q9NQV5 511 aa34.64■■■■□ 3.14
CPSF1-214ENST00000622776 CDK19Q9BWU1 502 aa34.63■■■■□ 3.13
CPSF1-214ENST00000622776 SPATA31A5Q5VU36 1347 aa34.62■■■■□ 3.13
CPSF1-214ENST00000622776 SPATA31A7Q8IWB4 1347 aa34.62■■■■□ 3.13
CPSF1-214ENST00000622776 ITSN1Q15811 1721 aa34.61■■■■□ 3.13
CPSF1-214ENST00000622776 CRYBG1Q9Y4K1 1723 aa34.61■■■■□ 3.13
CPSF1-214ENST00000622776 CCDC61Q9Y6R9 512 aa34.56■■■■□ 3.12
CPSF1-214ENST00000622776 KIAA0232Q92628 1395 aa34.55■■■■□ 3.12
CPSF1-214ENST00000622776 BAG6P46379 1132 aa34.55■■■■□ 3.12
CPSF1-214ENST00000622776 POLR3AO14802 1390 aaPredicted RBP34.54■■■■□ 3.12
CPSF1-214ENST00000622776 ACEP12821 1306 aa34.54■■■■□ 3.12
CPSF1-214ENST00000622776 CHRNA2Q15822 529 aa34.53■■■■□ 3.12
CPSF1-214ENST00000622776 NBPF1Q3BBV0 1214 aa34.53■■■■□ 3.12
CPSF1-214ENST00000622776 NBPF8Q3BBV2 869 aa34.53■■■■□ 3.12
CPSF1-214ENST00000622776 NUTM2GQ5VZR2 741 aa34.53■■■■□ 3.12
CPSF1-214ENST00000622776 KIAA1210Q9ULL0 1709 aa34.52■■■■□ 3.12
CPSF1-214ENST00000622776 PLEKHG3A1L390 1219 aa34.52■■■■□ 3.12
CPSF1-214ENST00000622776 ZC3H6P61129 1189 aaKnown RBP34.51■■■■□ 3.12
CPSF1-214ENST00000622776 FAM182BQ5T319 152 aa34.51■■■■□ 3.12
CPSF1-214ENST00000622776 SPATA31A1Q5TZJ5 1347 aa34.49■■■■□ 3.11
CPSF1-214ENST00000622776 TOPAZ1Q8N9V7 1692 aa34.48■■■■□ 3.11
CPSF1-214ENST00000622776 THSD7AQ9UPZ6 1657 aa34.47■■■■□ 3.11
CPSF1-214ENST00000622776 STRN4Q9NRL3 753 aa34.47■■■■□ 3.11
CPSF1-214ENST00000622776 PHRF1Q9P1Y6 1649 aaKnown RBP34.47■■■■□ 3.11
CPSF1-214ENST00000622776 ABTB2Q8N961 1025 aa34.44■■■■□ 3.1
CPSF1-214ENST00000622776 EN1Q05925 392 aaPredicted RBP34.43■■■■□ 3.1
CPSF1-214ENST00000622776 CENPJQ9HC77 1338 aaPredicted RBP34.41■■■■□ 3.1
CPSF1-214ENST00000622776 SRPK2P78362 688 aaKnown RBP34.41■■■■□ 3.1
CPSF1-214ENST00000622776 PSDA5PKW4 1024 aaPredicted RBP34.4■■■■□ 3.1
CPSF1-214ENST00000622776 RGPD1P0DJD0 1748 aa34.4■■■■□ 3.1
CPSF1-214ENST00000622776 EVA1CP58658 441 aa34.39■■■■□ 3.1
CPSF1-214ENST00000622776 USP19O94966 1318 aa34.37■■■■□ 3.09
CPSF1-214ENST00000622776 CABP2Q9NPB3 220 aa34.37■■■■□ 3.09
CPSF1-214ENST00000622776 USP35Q9P2H5 1018 aa34.37■■■■□ 3.09
CPSF1-214ENST00000622776 PPIP5K1Q6PFW1 1433 aa34.37■■■■□ 3.09
CPSF1-214ENST00000622776 SSH2Q76I76 1423 aa34.36■■■■□ 3.09
CPSF1-214ENST00000622776 CPDO75976 1380 aa34.36■■■■□ 3.09
CPSF1-214ENST00000622776 FAM196AQ6ZSG2 479 aa34.35■■■■□ 3.09
CPSF1-214ENST00000622776 NLRP13Q86W25 1043 aa34.35■■■■□ 3.09
CPSF1-214ENST00000622776 DISP2A7MBM2 1401 aa34.35■■■■□ 3.09
CPSF1-214ENST00000622776 NRKQ7Z2Y5 1582 aa34.35■■■■□ 3.09
CPSF1-214ENST00000622776 BARGINQ6ZT62 677 aa34.34■■■■□ 3.09
CPSF1-214ENST00000622776 CAMTA1Q9Y6Y1 1673 aa34.33■■■■□ 3.09
CPSF1-214ENST00000622776 LARP1Q6PKG0 1096 aaKnown RBP34.32■■■■□ 3.08
CPSF1-214ENST00000622776 LRP5O75197 1615 aa34.32■■■■□ 3.08
CPSF1-214ENST00000622776 TRIM37O94972 964 aa34.31■■■■□ 3.08
CPSF1-214ENST00000622776 GCP02774 474 aa34.31■■■■□ 3.08
CPSF1-214ENST00000622776 TNS1Q9HBL0 1735 aaKnown RBP34.3■■■■□ 3.08
CPSF1-214ENST00000622776 BRD4O60885 1362 aaPredicted RBP34.29■■■■□ 3.08
CPSF1-214ENST00000622776 L3MBTL2Q969R5 705 aa34.29■■■■□ 3.08
CPSF1-214ENST00000622776 PDE3BQ13370 1112 aa34.28■■■■□ 3.08
CPSF1-214ENST00000622776 EZH2Q15910 746 aaKnown RBP34.28■■■■□ 3.08
CPSF1-214ENST00000622776 TCP11L2Q8N4U5 519 aa34.28■■■■□ 3.08
CPSF1-214ENST00000622776 CABP1Q9NZU7 370 aa34.27■■■■□ 3.08
CPSF1-214ENST00000622776 LMO7Q8WWI1 1683 aa34.27■■■■□ 3.08
CPSF1-214ENST00000622776 CAMKK2Q96RR4 588 aa34.26■■■■□ 3.08
CPSF1-214ENST00000622776 QRICH2Q9H0J4 1663 aa34.25■■■■□ 3.07
CPSF1-214ENST00000622776 R3HDM1Q15032 1099 aaKnown RBP34.25■■■■□ 3.07
CPSF1-214ENST00000622776 APBA3O96018 575 aa34.23■■■■□ 3.07
CPSF1-214ENST00000622776 USP6P35125 1406 aa34.22■■■■□ 3.07
CPSF1-214ENST00000622776 NLRP6P59044 892 aa34.22■■■■□ 3.07
CPSF1-214ENST00000622776 THRAP3Q9Y2W1 955 aaKnown RBP34.22■■■■□ 3.07
CPSF1-214ENST00000622776 EVC2Q86UK5 1308 aa34.19■■■■□ 3.06
CPSF1-214ENST00000622776 COL5A2P05997 1499 aaPredicted RBP34.19■■■■□ 3.06
CPSF1-214ENST00000622776 SIN3AQ96ST3 1273 aa34.18■■■■□ 3.06
CPSF1-214ENST00000622776 ZBTB7CA1YPR0 619 aa34.17■■■■□ 3.06
CPSF1-214ENST00000622776 PARD3Q8TEW0 1356 aa34.17■■■■□ 3.06
CPSF1-214ENST00000622776 AATKQ6ZMQ8 1374 aa34.14■■■■□ 3.06
CPSF1-214ENST00000622776 CRB1P82279 1406 aa34.13■■■■□ 3.05
CPSF1-214ENST00000622776 SLIT3O75094 1523 aa34.13■■■■□ 3.05
CPSF1-214ENST00000622776 TRPM1Q7Z4N2 1603 aa34.12■■■■□ 3.05
CPSF1-214ENST00000622776 NEUROD1Q13562 356 aa34.1■■■■□ 3.05
CPSF1-214ENST00000622776 ROCK2O75116 1388 aaKnown RBP34.1■■■■□ 3.05
CPSF1-214ENST00000622776 PARP4Q9UKK3 1724 aaKnown RBP34.08■■■■□ 3.05
CPSF1-214ENST00000622776 C11orf95C9JLR9 678 aaPredicted RBP34.07■■■■□ 3.04
CPSF1-214ENST00000622776 ZNF692Q9BU19 519 aaPredicted RBP34.07■■■■□ 3.04
CPSF1-214ENST00000622776 PIK3C2AO00443 1686 aa34.06■■■■□ 3.04
CPSF1-214ENST00000622776 TTC21BQ7Z4L5 1316 aa34.05■■■■□ 3.04
CPSF1-214ENST00000622776 TOM1L2Q6ZVM7 507 aa34.05■■■■□ 3.04
CPSF1-214ENST00000622776 AXIN2Q9Y2T1 843 aa34.04■■■■□ 3.04
CPSF1-214ENST00000622776 RREB1Q92766 1687 aa34.03■■■■□ 3.04
CPSF1-214ENST00000622776 COL18A1P39060 1754 aa34.03■■■■□ 3.04
CPSF1-214ENST00000622776 NBPF14Q5TI25 921 aa34.02■■■■□ 3.04
CPSF1-214ENST00000622776 DDB1Q16531 1140 aa34.01■■■■□ 3.03
CPSF1-214ENST00000622776 ARHGEF25Q86VW2 580 aa34.01■■■■□ 3.03
CPSF1-214ENST00000622776 OVOS2A0A0G2JMS6 1433 aa34.01■■■■□ 3.03
CPSF1-214ENST00000622776 OVOS2A0A0J9YW53 1432 aa34.01■■■■□ 3.03
CPSF1-214ENST00000622776 OVOS2Q6IE36 1432 aa34.01■■■■□ 3.03
CPSF1-214ENST00000622776 WDR17Q8IZU2 1322 aa34.01■■■■□ 3.03
CPSF1-214ENST00000622776 CPSF1Q10570 1443 aaKnown RBP34■■■■□ 3.03
CPSF1-214ENST00000622776 KCNH5Q8NCM2 988 aa34■■■■□ 3.03
Retrieved 100 of 20,778 RNA–protein pairs in 121.4 ms