RNA–Protein interactions for RNA: ENST00000622533.4

CHD1L-210, Transcript of chromodomain helicase DNA binding protein 1 like, humanhuman

TSL 5

Gene CHD1L, Length 2,937 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1L-210ENST00000622533 PDCL3Q9H2J4 239 aa16.38■□□□□ 0.21
CHD1L-210ENST00000622533 TPM2P07951 284 aa16.38■□□□□ 0.21
CHD1L-210ENST00000622533 RBM10P98175 930 aaKnown RBP16.38■□□□□ 0.21
CHD1L-210ENST00000622533 HECW2Q9P2P5 1572 aa16.37■□□□□ 0.21
CHD1L-210ENST00000622533 U2AF1L5P0DN76 240 aaPredicted RBP16.37■□□□□ 0.21
CHD1L-210ENST00000622533 U2AF1Q01081 240 aaKnown RBP eCLIP16.37■□□□□ 0.212e-6■■□□□ 13.9
CHD1L-210ENST00000622533 PODXL2Q9NZ53 605 aa16.37■□□□□ 0.21
CHD1L-210ENST00000622533 MLH3Q9UHC1 1453 aa16.37■□□□□ 0.21
CHD1L-210ENST00000622533 VGFO15240 615 aaPredicted RBP16.37■□□□□ 0.21
CHD1L-210ENST00000622533 ABCC11Q96J66 1382 aa16.36■□□□□ 0.21
CHD1L-210ENST00000622533 DDX11L8A8MPP1 907 aa16.36■□□□□ 0.21
CHD1L-210ENST00000622533 PLEKHG5O94827 1062 aa16.36■□□□□ 0.21
CHD1L-210ENST00000622533 IL16Q14005 1332 aa16.35■□□□□ 0.21
CHD1L-210ENST00000622533 ARHGEF28Q8N1W1 1705 aaKnown RBP16.35■□□□□ 0.21
CHD1L-210ENST00000622533 HDAC1Q13547 482 aaPredicted RBP16.35■□□□□ 0.21
CHD1L-210ENST00000622533 DDX19BQ9UMR2 479 aa16.35■□□□□ 0.21
CHD1L-210ENST00000622533 TULP4Q9NRJ4 1543 aa16.35■□□□□ 0.21
CHD1L-210ENST00000622533 ZNF692Q9BU19 519 aaPredicted RBP16.35■□□□□ 0.21
CHD1L-210ENST00000622533 POGZQ7Z3K3 1410 aa16.35■□□□□ 0.21
CHD1L-210ENST00000622533 TMEM132EQ6IEE7 984 aa16.34■□□□□ 0.21
CHD1L-210ENST00000622533 ABCC3O15438 1527 aa16.34■□□□□ 0.21
CHD1L-210ENST00000622533 HSCBQ8IWL3 235 aa16.33■□□□□ 0.21
CHD1L-210ENST00000622533 FRMPD1Q5SYB0 1578 aa16.33■□□□□ 0.2
CHD1L-210ENST00000622533 TNPO1Q92973 898 aaKnown RBP16.32■□□□□ 0.2
CHD1L-210ENST00000622533 CAMSAP1Q5T5Y3 1602 aa16.32■□□□□ 0.2
CHD1L-210ENST00000622533 SMC4Q9NTJ3 1288 aa16.32■□□□□ 0.2
CHD1L-210ENST00000622533 PIK3C2BO00750 1634 aa16.32■□□□□ 0.2
CHD1L-210ENST00000622533 MED14O60244 1454 aa16.32■□□□□ 0.2
CHD1L-210ENST00000622533 FOXD4L1Q9NU39 408 aa16.31■□□□□ 0.2
CHD1L-210ENST00000622533 ARID3AQ99856 593 aa16.31■□□□□ 0.2
CHD1L-210ENST00000622533 NEXMIFQ5QGS0 1516 aa16.31■□□□□ 0.2
CHD1L-210ENST00000622533 ZFYVE9O95405 1425 aa16.3■□□□□ 0.2
CHD1L-210ENST00000622533 GGT6Q6P531 493 aa16.3■□□□□ 0.2
CHD1L-210ENST00000622533 ATF7IPQ6VMQ6 1270 aa16.3■□□□□ 0.2
CHD1L-210ENST00000622533 IPO8O15397 1037 aaKnown RBP16.29■□□□□ 0.2
CHD1L-210ENST00000622533 TMPOP42166 694 aaKnown RBP16.29■□□□□ 0.2
CHD1L-210ENST00000622533 PLEKHF1Q96S99 279 aa16.29■□□□□ 0.2
CHD1L-210ENST00000622533 KIF16BQ96L93 1317 aa16.29■□□□□ 0.2
CHD1L-210ENST00000622533 RIPK4P57078 832 aa16.29■□□□□ 0.2
CHD1L-210ENST00000622533 ISY1Q9ULR0 285 aaKnown RBP16.29■□□□□ 0.2
CHD1L-210ENST00000622533 ATAD2Q6PL18 1390 aa16.29■□□□□ 0.2
CHD1L-210ENST00000622533 FAM13BQ9NYF5 915 aa16.29■□□□□ 0.2
CHD1L-210ENST00000622533 PRDM4Q9UKN5 801 aa16.29■□□□□ 0.2
CHD1L-210ENST00000622533 TRIM27P14373 513 aa16.28■□□□□ 0.2
CHD1L-210ENST00000622533 EXOSC9Q06265 439 aaKnown RBP16.28■□□□□ 0.2
CHD1L-210ENST00000622533 COL3A1P02461 1466 aaPredicted RBP16.28■□□□□ 0.2
CHD1L-210ENST00000622533 ANKRD26Q9UPS8 1709 aa16.28■□□□□ 0.2
CHD1L-210ENST00000622533 SMC5Q8IY18 1101 aa16.28■□□□□ 0.2
CHD1L-210ENST00000622533 TERF2IPQ9NYB0 399 aa16.28■□□□□ 0.2
CHD1L-210ENST00000622533 ARHGAP31Q2M1Z3 1444 aa16.27■□□□□ 0.2
CHD1L-210ENST00000622533 A0A1W2PP64 1363 aa16.27■□□□□ 0.19
CHD1L-210ENST00000622533 NPM1P06748 294 aaKnown RBP eCLIP16.27■□□□□ 0.19
CHD1L-210ENST00000622533 CALD1Q05682 793 aaKnown RBP16.27■□□□□ 0.19
CHD1L-210ENST00000622533 ITPRIPQ8IWB1 547 aa16.27■□□□□ 0.19
CHD1L-210ENST00000622533 CFAP65Q6ZU64 1925 aaKnown RBP16.27■□□□□ 0.19
CHD1L-210ENST00000622533 CD109Q6YHK3 1445 aa16.26■□□□□ 0.19
CHD1L-210ENST00000622533 CABP2Q9NPB3 220 aa16.26■□□□□ 0.19
CHD1L-210ENST00000622533 U2SURPO15042 1029 aaKnown RBP16.26■□□□□ 0.19
CHD1L-210ENST00000622533 DDIT3P35638 169 aa16.26■□□□□ 0.19
CHD1L-210ENST00000622533 SSH1Q8WYL5 1049 aa16.26■□□□□ 0.19
CHD1L-210ENST00000622533 TSR2Q969E8 191 aaKnown RBP16.26■□□□□ 0.19
CHD1L-210ENST00000622533 ZNF428Q96B54 188 aa16.26■□□□□ 0.19
CHD1L-210ENST00000622533 CHMP4BQ9H444 224 aaKnown RBP16.26■□□□□ 0.19
CHD1L-210ENST00000622533 TRIM35Q9UPQ4 493 aa16.26■□□□□ 0.19
CHD1L-210ENST00000622533 ALDH1L2Q3SY69 923 aa16.25■□□□□ 0.19
CHD1L-210ENST00000622533 NASPP49321 788 aaPredicted RBP16.25■□□□□ 0.19
CHD1L-210ENST00000622533 ZSCAN30Q86W11 494 aa16.25■□□□□ 0.19
CHD1L-210ENST00000622533 R3HCC1Q9Y3T6 440 aaKnown RBP16.25■□□□□ 0.19
CHD1L-210ENST00000622533 OFD1O75665 1012 aa16.25■□□□□ 0.19
CHD1L-210ENST00000622533 HSP90AB1P08238 724 aaKnown RBP16.24■□□□□ 0.19
CHD1L-210ENST00000622533 MSNP26038 577 aaKnown RBP16.24■□□□□ 0.19
CHD1L-210ENST00000622533 CCDC173Q0VFZ6 552 aa16.24■□□□□ 0.19
CHD1L-210ENST00000622533 GBP4Q96PP9 640 aa16.24■□□□□ 0.19
CHD1L-210ENST00000622533 A0A0U1RQG5 324 aaPredicted RBP16.23■□□□□ 0.19
CHD1L-210ENST00000622533 SRPK2P78362 688 aaKnown RBP16.23■□□□□ 0.19
CHD1L-210ENST00000622533 SLC52A1Q9NWF4 448 aa16.23■□□□□ 0.19
CHD1L-210ENST00000622533 NOB1Q9ULX3 412 aaKnown RBP16.23■□□□□ 0.19
CHD1L-210ENST00000622533 SIGLEC1Q9BZZ2 1709 aa16.23■□□□□ 0.19
CHD1L-210ENST00000622533 CLTCQ00610 1675 aaKnown RBP16.23■□□□□ 0.19
CHD1L-210ENST00000622533 ZBTB40Q9NUA8 1239 aa16.23■□□□□ 0.19
CHD1L-210ENST00000622533 DIAPH1O60610 1272 aaKnown RBP16.22■□□□□ 0.19
CHD1L-210ENST00000622533 BRPF1P55201 1214 aaPredicted RBP16.22■□□□□ 0.19
CHD1L-210ENST00000622533 PNPLA6Q8IY17 1366 aa16.22■□□□□ 0.19
CHD1L-210ENST00000622533 RAB3GAP1Q15042 981 aa16.21■□□□□ 0.19
CHD1L-210ENST00000622533 PPP1R9BQ96SB3 815 aa16.21■□□□□ 0.19
CHD1L-210ENST00000622533 NUCB1Q02818 461 aa16.21■□□□□ 0.18
CHD1L-210ENST00000622533 HDGFL2Q7Z4V5 671 aaPredicted RBP16.21■□□□□ 0.18
CHD1L-210ENST00000622533 GGNBP2Q9H3C7 697 aa16.21■□□□□ 0.18
CHD1L-210ENST00000622533 CDC42BPGQ6DT37 1551 aa16.2■□□□□ 0.18
CHD1L-210ENST00000622533 RBM25P49756 843 aaKnown RBP16.2■□□□□ 0.18
CHD1L-210ENST00000622533 SKOR2Q2VWA4 1001 aaPredicted RBP16.2■□□□□ 0.18
CHD1L-210ENST00000622533 TMEM57Q8N5G2 664 aa16.2■□□□□ 0.18
CHD1L-210ENST00000622533 SNX21Q969T3 373 aa16.2■□□□□ 0.18
CHD1L-210ENST00000622533 NEO1Q92859 1461 aa16.2■□□□□ 0.18
CHD1L-210ENST00000622533 NCOA3Q9Y6Q9 1424 aa16.2■□□□□ 0.18
CHD1L-210ENST00000622533 FYB1O15117 783 aa16.2■□□□□ 0.18
CHD1L-210ENST00000622533 FCHSD2O94868 740 aa16.2■□□□□ 0.18
CHD1L-210ENST00000622533 CD2BP2O95400 341 aaKnown RBP16.2■□□□□ 0.18
CHD1L-210ENST00000622533 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.2■□□□□ 0.18
CHD1L-210ENST00000622533 ANP32BQ92688 251 aaKnown RBP16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms