RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 CCDC27Q2M243 656 aa11.33□□□□□ -0.6
GGA3-223ENST00000621870 WASHC4Q2M389 1173 aa11.33□□□□□ -0.6
GGA3-223ENST00000621870 KRT28Q7Z3Y7 464 aa11.33□□□□□ -0.6
GGA3-223ENST00000621870 MIS18AQ9NYP9 233 aa11.33□□□□□ -0.6
GGA3-223ENST00000621870 KIF3AQ9Y496 699 aa11.33□□□□□ -0.6
GGA3-223ENST00000621870 TNRQ92752 1358 aa11.33□□□□□ -0.6
GGA3-223ENST00000621870 DHX16O60231 1041 aaKnown RBP11.32□□□□□ -0.6
GGA3-223ENST00000621870 SF3A1Q15459 793 aaKnown RBP11.32□□□□□ -0.6
GGA3-223ENST00000621870 PNISRQ8TF01 805 aaKnown RBP11.32□□□□□ -0.6
GGA3-223ENST00000621870 FYB1O15117 783 aa11.32□□□□□ -0.6
GGA3-223ENST00000621870 SYNE3Q6ZMZ3 975 aa11.32□□□□□ -0.6
GGA3-223ENST00000621870 NOS1P29475 1434 aa11.32□□□□□ -0.6
GGA3-223ENST00000621870 DCTN1Q14203 1278 aa11.32□□□□□ -0.6
GGA3-223ENST00000621870 CHRNA2Q15822 529 aa11.32□□□□□ -0.6
GGA3-223ENST00000621870 FAM161AQ3B820 660 aa11.32□□□□□ -0.6
GGA3-223ENST00000621870 CPLX2Q6PUV4 134 aaKnown RBP11.32□□□□□ -0.6
GGA3-223ENST00000621870 THOC2Q8NI27 1593 aaKnown RBP11.32□□□□□ -0.6
GGA3-223ENST00000621870 GOLGA6L6A8MZA4 724 aa11.32□□□□□ -0.6
GGA3-223ENST00000621870 TRDNQ13061 729 aa11.32□□□□□ -0.6
GGA3-223ENST00000621870 FAM184AQ8NB25 1140 aa11.32□□□□□ -0.6
GGA3-223ENST00000621870 C1orf115Q9H7X2 142 aa11.32□□□□□ -0.6
GGA3-223ENST00000621870 FCHSD2O94868 740 aa11.31□□□□□ -0.6
GGA3-223ENST00000621870 DRC7Q8IY82 874 aa11.31□□□□□ -0.6
GGA3-223ENST00000621870 PLCH2O75038 1416 aa11.31□□□□□ -0.6
GGA3-223ENST00000621870 BTBD11A6QL63 1104 aa11.31□□□□□ -0.6
GGA3-223ENST00000621870 REC8O95072 547 aa11.31□□□□□ -0.6
GGA3-223ENST00000621870 PDE4AP27815 886 aa11.31□□□□□ -0.6
GGA3-223ENST00000621870 C11orf95C9JLR9 678 aaPredicted RBP11.31□□□□□ -0.6
GGA3-223ENST00000621870 BICDL1Q6ZP65 573 aa11.31□□□□□ -0.6
GGA3-223ENST00000621870 BCAR3O75815 825 aa11.3□□□□□ -0.6
GGA3-223ENST00000621870 MCM10Q7L590 875 aa11.3□□□□□ -0.6
GGA3-223ENST00000621870 ERC2O15083 957 aa11.3□□□□□ -0.6
GGA3-223ENST00000621870 MPRIPQ6WCQ1 1025 aa11.3□□□□□ -0.6
GGA3-223ENST00000621870 C14orf93Q9H972 538 aaKnown RBP11.3□□□□□ -0.6
GGA3-223ENST00000621870 PTPN23Q9H3S7 1636 aa11.3□□□□□ -0.6
GGA3-223ENST00000621870 SLC4A3P48751 1232 aa11.3□□□□□ -0.6
GGA3-223ENST00000621870 CCDC34Q96HJ3 373 aa11.3□□□□□ -0.6
GGA3-223ENST00000621870 CCDC85AQ96PX6 553 aaPredicted RBP11.3□□□□□ -0.6
GGA3-223ENST00000621870 FBLN1P23142 703 aa11.29□□□□□ -0.6
GGA3-223ENST00000621870 CNNM1Q9NRU3 951 aa11.29□□□□□ -0.6
GGA3-223ENST00000621870 H3BQV1 296 aa11.29□□□□□ -0.6
GGA3-223ENST00000621870 CPLX1O14810 134 aa11.29□□□□□ -0.6
GGA3-223ENST00000621870 IFFO2Q5TF58 517 aa11.29□□□□□ -0.6
GGA3-223ENST00000621870 SIL1Q9H173 461 aa11.29□□□□□ -0.6
GGA3-223ENST00000621870 DCAF8L1A6NGE4 600 aa11.29□□□□□ -0.6
GGA3-223ENST00000621870 MCTP1Q6DN14 999 aa11.29□□□□□ -0.6
GGA3-223ENST00000621870 SRCIN1Q9C0H9 1055 aa11.29□□□□□ -0.6
GGA3-223ENST00000621870 CTDP1Q9Y5B0 961 aaPredicted RBP11.29□□□□□ -0.6
GGA3-223ENST00000621870 TMPOP42166 694 aaKnown RBP11.28□□□□□ -0.6
GGA3-223ENST00000621870 CREBRFQ8IUR6 639 aa11.28□□□□□ -0.6
GGA3-223ENST00000621870 NOB1Q9ULX3 412 aaKnown RBP11.28□□□□□ -0.6
GGA3-223ENST00000621870 NUP153P49790 1475 aaKnown RBP11.28□□□□□ -0.6
GGA3-223ENST00000621870 NFE2L2Q16236 605 aa11.28□□□□□ -0.6
GGA3-223ENST00000621870 MTMR7Q9Y216 660 aa11.28□□□□□ -0.6
GGA3-223ENST00000621870 KDM5BQ9UGL1 1544 aa11.28□□□□□ -0.6
GGA3-223ENST00000621870 TRAPPC8Q9Y2L5 1435 aa11.27□□□□□ -0.6
GGA3-223ENST00000621870 GNAT3A8MTJ3 354 aa11.27□□□□□ -0.6
GGA3-223ENST00000621870 TOM1O60784 492 aa11.27□□□□□ -0.6
GGA3-223ENST00000621870 ACEP12821 1306 aa11.27□□□□□ -0.6
GGA3-223ENST00000621870 TEX14Q8IWB6 1497 aa11.27□□□□□ -0.61
GGA3-223ENST00000621870 KIF21AQ7Z4S6 1674 aa11.27□□□□□ -0.61
GGA3-223ENST00000621870 MPHOSPH8Q99549 860 aa11.27□□□□□ -0.61
GGA3-223ENST00000621870 RNF20Q5VTR2 975 aa11.26□□□□□ -0.61
GGA3-223ENST00000621870 DNAJC2Q99543 621 aaKnown RBP11.26□□□□□ -0.61
GGA3-223ENST00000621870 FSD1Q9BTV5 496 aa11.26□□□□□ -0.61
GGA3-223ENST00000621870 A2MP01023 1474 aa11.26□□□□□ -0.61
GGA3-223ENST00000621870 GNAI2P04899 355 aa11.26□□□□□ -0.61
GGA3-223ENST00000621870 TMOD3Q9NYL9 352 aa11.26□□□□□ -0.61
GGA3-223ENST00000621870 WDR7Q9Y4E6 1490 aa11.26□□□□□ -0.61
GGA3-223ENST00000621870 EXOC5O00471 708 aa11.26□□□□□ -0.61
GGA3-223ENST00000621870 NFXL1Q6ZNB6 911 aa11.26□□□□□ -0.61
GGA3-223ENST00000621870 RALYLQ86SE5 291 aaKnown RBP11.26□□□□□ -0.61
GGA3-223ENST00000621870 UHRF1BP1LA0JNW5 1464 aa11.25□□□□□ -0.61
GGA3-223ENST00000621870 STARD3NLO95772 234 aa11.25□□□□□ -0.61
GGA3-223ENST00000621870 BIVM-ERCC5R4GMW8 1640 aa11.25□□□□□ -0.61
GGA3-223ENST00000621870 WDR97A6NE52 1622 aa11.25□□□□□ -0.61
GGA3-223ENST00000621870 WDR63Q8IWG1 891 aa11.25□□□□□ -0.61
GGA3-223ENST00000621870 IPO9Q96P70 1041 aaKnown RBP11.24□□□□□ -0.61
GGA3-223ENST00000621870 CCDC57Q2TAC2 916 aa11.24□□□□□ -0.61
GGA3-223ENST00000621870 ATF7IPQ6VMQ6 1270 aa11.24□□□□□ -0.61
GGA3-223ENST00000621870 TBC1D2BQ9UPU7 963 aa11.24□□□□□ -0.61
GGA3-223ENST00000621870 MSH6P52701 1360 aa11.24□□□□□ -0.61
GGA3-223ENST00000621870 SYAP1Q96A49 352 aaPredicted RBP11.24□□□□□ -0.61
GGA3-223ENST00000621870 FANCIQ9NVI1 1328 aa11.24□□□□□ -0.61
GGA3-223ENST00000621870 DUSP27Q5VZP5 1158 aa11.23□□□□□ -0.61
GGA3-223ENST00000621870 INTS3Q68E01 1043 aaKnown RBP11.23□□□□□ -0.61
GGA3-223ENST00000621870 WWC1Q8IX03 1113 aa11.23□□□□□ -0.61
GGA3-223ENST00000621870 ERICH2A1L162 156 aa11.23□□□□□ -0.61
GGA3-223ENST00000621870 CABLES1Q8TDN4 633 aa11.23□□□□□ -0.61
GGA3-223ENST00000621870 MAP3K1Q13233 1512 aa11.23□□□□□ -0.61
GGA3-223ENST00000621870 ZNF518AQ6AHZ1 1483 aa11.22□□□□□ -0.61
GGA3-223ENST00000621870 NCKAP5LQ9HCH0 1330 aa11.22□□□□□ -0.61
GGA3-223ENST00000621870 SRGAP3O43295 1099 aa11.22□□□□□ -0.61
GGA3-223ENST00000621870 RTN4Q9NQC3 1192 aaKnown RBP11.22□□□□□ -0.61
GGA3-223ENST00000621870 KCNA6P17658 529 aa11.22□□□□□ -0.61
GGA3-223ENST00000621870 CCT4P50991 539 aaKnown RBP11.22□□□□□ -0.61
GGA3-223ENST00000621870 TRIM29Q14134 588 aa11.22□□□□□ -0.61
GGA3-223ENST00000621870 AMOTQ4VCS5 1084 aa11.22□□□□□ -0.61
GGA3-223ENST00000621870 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.22□□□□□ -0.61
GGA3-223ENST00000621870 CHMP4CQ96CF2 233 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms