RNA–Protein interactions for RNA: ENST00000621217.4

GGA3-222, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 4,181 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-222ENST00000621217 KDM5CP41229 1560 aa11.34□□□□□ -0.59
GGA3-222ENST00000621217 COL17A1Q9UMD9 1497 aaPredicted RBP11.33□□□□□ -0.6
GGA3-222ENST00000621217 RARSP54136 660 aaKnown RBP11.33□□□□□ -0.6
GGA3-222ENST00000621217 TSPYL4Q9UJ04 414 aa11.33□□□□□ -0.6
GGA3-222ENST00000621217 MCM10Q7L590 875 aa11.32□□□□□ -0.6
GGA3-222ENST00000621217 FAM83GA6ND36 823 aa11.32□□□□□ -0.6
GGA3-222ENST00000621217 TMPOP42166 694 aaKnown RBP11.32□□□□□ -0.6
GGA3-222ENST00000621217 LMOD3Q0VAK6 560 aa11.32□□□□□ -0.6
GGA3-222ENST00000621217 NOL8Q76FK4 1167 aaKnown RBP11.32□□□□□ -0.6
GGA3-222ENST00000621217 PREX2Q70Z35 1606 aa11.32□□□□□ -0.6
GGA3-222ENST00000621217 ATP10AO60312 1499 aa11.32□□□□□ -0.6
GGA3-222ENST00000621217 UHRF1BP1LA0JNW5 1464 aa11.31□□□□□ -0.6
GGA3-222ENST00000621217 MAST1Q9Y2H9 1570 aa11.31□□□□□ -0.6
GGA3-222ENST00000621217 PDE3AQ14432 1141 aa11.31□□□□□ -0.6
GGA3-222ENST00000621217 ARHGEF5Q12774 1597 aa11.31□□□□□ -0.6
GGA3-222ENST00000621217 SSH1Q8WYL5 1049 aa11.31□□□□□ -0.6
GGA3-222ENST00000621217 DDX19BQ9UMR2 479 aa11.31□□□□□ -0.6
GGA3-222ENST00000621217 ABCC1P33527 1531 aa11.31□□□□□ -0.6
GGA3-222ENST00000621217 ACEP12821 1306 aa11.31□□□□□ -0.6
GGA3-222ENST00000621217 RIMS2Q9UQ26 1411 aa11.3□□□□□ -0.6
GGA3-222ENST00000621217 RLBP1P12271 317 aa11.3□□□□□ -0.6
GGA3-222ENST00000621217 HSP90AB2PQ58FF8 381 aa11.3□□□□□ -0.6
GGA3-222ENST00000621217 ZNF692Q9BU19 519 aaPredicted RBP11.3□□□□□ -0.6
GGA3-222ENST00000621217 FOXD4L5Q5VV16 416 aaPredicted RBP11.3□□□□□ -0.6
GGA3-222ENST00000621217 FOXD4L4Q8WXT5 416 aaPredicted RBP11.3□□□□□ -0.6
GGA3-222ENST00000621217 CDC42BPBQ9Y5S2 1711 aa11.3□□□□□ -0.6
GGA3-222ENST00000621217 LTKP29376 864 aa11.29□□□□□ -0.6
GGA3-222ENST00000621217 EVA1CP58658 441 aa11.29□□□□□ -0.6
GGA3-222ENST00000621217 FKBP5Q13451 457 aaPredicted RBP11.29□□□□□ -0.6
GGA3-222ENST00000621217 C1orf141Q5JVX7 400 aa11.29□□□□□ -0.6
GGA3-222ENST00000621217 MAGI2Q86UL8 1455 aa11.29□□□□□ -0.6
GGA3-222ENST00000621217 KCNA6P17658 529 aa11.29□□□□□ -0.6
GGA3-222ENST00000621217 SYTL4Q96C24 671 aaPredicted RBP11.29□□□□□ -0.6
GGA3-222ENST00000621217 KAT6BQ8WYB5 2073 aa11.29□□□□□ -0.6
GGA3-222ENST00000621217 NKTRP30414 1462 aaKnown RBP11.29□□□□□ -0.6
GGA3-222ENST00000621217 TMEM57Q8N5G2 664 aa11.29□□□□□ -0.6
GGA3-222ENST00000621217 STRN4Q9NRL3 753 aa11.29□□□□□ -0.6
GGA3-222ENST00000621217 PCDHB15Q9Y5E8 787 aa11.28□□□□□ -0.6
GGA3-222ENST00000621217 ASXL1Q8IXJ9 1541 aa11.28□□□□□ -0.6
GGA3-222ENST00000621217 AIMP1Q12904 312 aaKnown RBP11.28□□□□□ -0.6
GGA3-222ENST00000621217 AEBP1Q8IUX7 1158 aa11.28□□□□□ -0.6
GGA3-222ENST00000621217 CHMP3Q9Y3E7 222 aa11.28□□□□□ -0.6
GGA3-222ENST00000621217 RNF123Q5XPI4 1314 aa11.28□□□□□ -0.6
GGA3-222ENST00000621217 GNAI1P63096 354 aa11.28□□□□□ -0.6
GGA3-222ENST00000621217 MVPQ14764 893 aaKnown RBP11.28□□□□□ -0.6
GGA3-222ENST00000621217 TWISTNBQ3B726 338 aaPredicted RBP11.28□□□□□ -0.6
GGA3-222ENST00000621217 WDR63Q8IWG1 891 aa11.27□□□□□ -0.6
GGA3-222ENST00000621217 ADCY10Q96PN6 1610 aa11.27□□□□□ -0.61
GGA3-222ENST00000621217 ATF7IPQ6VMQ6 1270 aa11.27□□□□□ -0.61
GGA3-222ENST00000621217 GPRASP1Q5JY77 1395 aa11.27□□□□□ -0.61
GGA3-222ENST00000621217 GOLGA6L3A6NEY3 463 aa11.27□□□□□ -0.61
GGA3-222ENST00000621217 PODXL2Q9NZ53 605 aa11.27□□□□□ -0.61
GGA3-222ENST00000621217 CASC1Q6TDU7 716 aa11.26□□□□□ -0.61
GGA3-222ENST00000621217 C22orf23Q9BZE7 217 aa11.26□□□□□ -0.61
GGA3-222ENST00000621217 BRPF3Q9ULD4 1205 aa11.26□□□□□ -0.61
GGA3-222ENST00000621217 A0A1W2PP64 1363 aa11.26□□□□□ -0.61
GGA3-222ENST00000621217 FOXD4L6Q3SYB3 417 aaPredicted RBP11.26□□□□□ -0.61
GGA3-222ENST00000621217 FOXD4L3Q6VB84 417 aaPredicted RBP11.26□□□□□ -0.61
GGA3-222ENST00000621217 CHMP4BQ9H444 224 aaKnown RBP11.26□□□□□ -0.61
GGA3-222ENST00000621217 PHF8Q9UPP1 1060 aa11.25□□□□□ -0.61
GGA3-222ENST00000621217 TRIM6-TRIM34B2RNG4 842 aa11.25□□□□□ -0.61
GGA3-222ENST00000621217 SEC24BO95487 1268 aa11.25□□□□□ -0.61
GGA3-222ENST00000621217 TRIM27P14373 513 aa11.25□□□□□ -0.61
GGA3-222ENST00000621217 RAPGEF4Q8WZA2 1011 aa11.25□□□□□ -0.61
GGA3-222ENST00000621217 POLKQ9UBT6 870 aa11.24□□□□□ -0.61
GGA3-222ENST00000621217 KIF16BQ96L93 1317 aa11.24□□□□□ -0.61
GGA3-222ENST00000621217 SLC4A2P04920 1241 aa11.24□□□□□ -0.61
GGA3-222ENST00000621217 YTHDC2Q9H6S0 1430 aaKnown RBP11.24□□□□□ -0.61
GGA3-222ENST00000621217 NPHP1O15259 732 aa11.24□□□□□ -0.61
GGA3-222ENST00000621217 FCHSD2O94868 740 aa11.24□□□□□ -0.61
GGA3-222ENST00000621217 PHACTR3Q96KR7 559 aa11.24□□□□□ -0.61
GGA3-222ENST00000621217 PPP6R1Q9UPN7 881 aa11.24□□□□□ -0.61
GGA3-222ENST00000621217 CABLES1Q8TDN4 633 aa11.23□□□□□ -0.61
GGA3-222ENST00000621217 CLASP1Q7Z460 1538 aa11.23□□□□□ -0.61
GGA3-222ENST00000621217 PRDM15P57071 1507 aaPredicted RBP11.23□□□□□ -0.61
GGA3-222ENST00000621217 KDM5DQ9BY66 1539 aa11.23□□□□□ -0.61
GGA3-222ENST00000621217 ZFYVE16Q7Z3T8 1539 aa11.23□□□□□ -0.61
GGA3-222ENST00000621217 CHRNA2Q15822 529 aa11.23□□□□□ -0.61
GGA3-222ENST00000621217 NFE2L2Q16236 605 aa11.22□□□□□ -0.61
GGA3-222ENST00000621217 KRT24Q2M2I5 525 aa11.22□□□□□ -0.61
GGA3-222ENST00000621217 PPIP5K1Q6PFW1 1433 aa11.22□□□□□ -0.61
GGA3-222ENST00000621217 C8orf34Q49A92 452 aa11.22□□□□□ -0.61
GGA3-222ENST00000621217 ZNF530Q6P9A1 599 aaPredicted RBP11.22□□□□□ -0.61
GGA3-222ENST00000621217 DDX54Q8TDD1 881 aaKnown RBP11.22□□□□□ -0.61
GGA3-222ENST00000621217 DDX17Q92841 729 aaKnown RBP11.22□□□□□ -0.61
GGA3-222ENST00000621217 RILPL2Q969X0 211 aa11.22□□□□□ -0.61
GGA3-222ENST00000621217 ANKRD36BQ8N2N9 1353 aa11.22□□□□□ -0.61
GGA3-222ENST00000621217 NEO1Q92859 1461 aa11.22□□□□□ -0.61
GGA3-222ENST00000621217 KCNJ4P48050 445 aa11.21□□□□□ -0.61
GGA3-222ENST00000621217 CHAF1AQ13111 956 aaPredicted RBP11.21□□□□□ -0.61
GGA3-222ENST00000621217 UBE2Q2Q8WVN8 375 aa11.21□□□□□ -0.61
GGA3-222ENST00000621217 PIP4K2BP78356 416 aa11.21□□□□□ -0.62
GGA3-222ENST00000621217 ARID3AQ99856 593 aa11.21□□□□□ -0.62
GGA3-222ENST00000621217 TTC21BQ7Z4L5 1316 aa11.21□□□□□ -0.62
GGA3-222ENST00000621217 NUTM2BA6NNL0 878 aaPredicted RBP11.2□□□□□ -0.62
GGA3-222ENST00000621217 NUTM2EB1AL46 878 aaPredicted RBP11.2□□□□□ -0.62
GGA3-222ENST00000621217 NUTM2AQ8IVF1 878 aaPredicted RBP11.2□□□□□ -0.62
GGA3-222ENST00000621217 EIF2AK4Q9P2K8 1649 aaKnown RBP11.2□□□□□ -0.62
GGA3-222ENST00000621217 MPRIPQ6WCQ1 1025 aa11.2□□□□□ -0.62
GGA3-222ENST00000621217 ORAI2Q96SN7 254 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms