RNA–Protein interactions for RNA: ENST00000620996.4

VTA1-205, Transcript of vesicle trafficking 1, humanhuman

TSL 3 BASIC

Gene VTA1, Length 3,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-205ENST00000620996 SPINK5Q9NQ38 1064 aaPredicted RBP13□□□□□ -0.33
VTA1-205ENST00000620996 ATP7BP35670 1465 aa12.99□□□□□ -0.33
VTA1-205ENST00000620996 NGDNQ8NEJ9 315 aaKnown RBP12.99□□□□□ -0.33
VTA1-205ENST00000620996 DUSP27Q5VZP5 1158 aa12.99□□□□□ -0.33
VTA1-205ENST00000620996 EXOC6Q8TAG9 804 aa12.99□□□□□ -0.33
VTA1-205ENST00000620996 DMRT2Q9Y5R5 561 aa12.99□□□□□ -0.33
VTA1-205ENST00000620996 EMILIN1Q9Y6C2 1016 aa12.99□□□□□ -0.33
VTA1-205ENST00000620996 CPS1P31327 1500 aa12.99□□□□□ -0.33
VTA1-205ENST00000620996 ACEP12821 1306 aa12.98□□□□□ -0.33
VTA1-205ENST00000620996 RRS1Q15050 365 aaKnown RBP12.98□□□□□ -0.33
VTA1-205ENST00000620996 SLIT1O75093 1534 aa12.98□□□□□ -0.33
VTA1-205ENST00000620996 SLFN5Q08AF3 891 aa12.98□□□□□ -0.33
VTA1-205ENST00000620996 CEP170BQ9Y4F5 1589 aaPredicted RBP12.98□□□□□ -0.33
VTA1-205ENST00000620996 ARHGAP23Q9P227 1491 aa12.98□□□□□ -0.33
VTA1-205ENST00000620996 EDC4Q6P2E9 1401 aaKnown RBP12.97□□□□□ -0.33
VTA1-205ENST00000620996 WWC1Q8IX03 1113 aa12.97□□□□□ -0.33
VTA1-205ENST00000620996 E9PSI1 815 aa12.97□□□□□ -0.33
VTA1-205ENST00000620996 RNF123Q5XPI4 1314 aa12.97□□□□□ -0.33
VTA1-205ENST00000620996 NEFMP07197 916 aa12.96□□□□□ -0.33
VTA1-205ENST00000620996 ZNF692Q9BU19 519 aaPredicted RBP12.96□□□□□ -0.33
VTA1-205ENST00000620996 ZNF521Q96K83 1311 aa12.96□□□□□ -0.33
VTA1-205ENST00000620996 HMOX1P09601 288 aa12.96□□□□□ -0.33
VTA1-205ENST00000620996 POLKQ9UBT6 870 aa12.96□□□□□ -0.33
VTA1-205ENST00000620996 KNDC1Q76NI1 1749 aa12.96□□□□□ -0.34
VTA1-205ENST00000620996 PLEKHG5O94827 1062 aa12.96□□□□□ -0.34
VTA1-205ENST00000620996 CANXP27824 592 aaKnown RBP12.96□□□□□ -0.34
VTA1-205ENST00000620996 SHPRHQ149N8 1683 aa12.94□□□□□ -0.34
VTA1-205ENST00000620996 PAK3O75914 559 aaPredicted RBP12.94□□□□□ -0.34
VTA1-205ENST00000620996 CPSF1Q10570 1443 aaKnown RBP12.94□□□□□ -0.34
VTA1-205ENST00000620996 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.94□□□□□ -0.34
VTA1-205ENST00000620996 NUTM2GQ5VZR2 741 aa12.94□□□□□ -0.34
VTA1-205ENST00000620996 MED14O60244 1454 aa12.94□□□□□ -0.34
VTA1-205ENST00000620996 TTC21BQ7Z4L5 1316 aa12.94□□□□□ -0.34
VTA1-205ENST00000620996 CRBNQ96SW2 442 aa12.93□□□□□ -0.34
VTA1-205ENST00000620996 KIF20BQ96Q89 1820 aa12.93□□□□□ -0.34
VTA1-205ENST00000620996 CDC42BPGQ6DT37 1551 aa12.93□□□□□ -0.34
VTA1-205ENST00000620996 C20orf194Q5TEA3 1177 aa12.93□□□□□ -0.34
VTA1-205ENST00000620996 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.93□□□□□ -0.34
VTA1-205ENST00000620996 RTN4Q9NQC3 1192 aaKnown RBP12.93□□□□□ -0.34
VTA1-205ENST00000620996 PRKAR2BP31323 418 aa12.92□□□□□ -0.34
VTA1-205ENST00000620996 NGEFQ8N5V2 710 aa12.92□□□□□ -0.34
VTA1-205ENST00000620996 BCAR3O75815 825 aa12.91□□□□□ -0.34
VTA1-205ENST00000620996 RIPK4P57078 832 aa12.91□□□□□ -0.34
VTA1-205ENST00000620996 FRAT1Q92837 279 aaPredicted RBP12.91□□□□□ -0.34
VTA1-205ENST00000620996 LAS1LQ9Y4W2 734 aaKnown RBP12.91□□□□□ -0.34
VTA1-205ENST00000620996 NKTRP30414 1462 aaKnown RBP12.91□□□□□ -0.34
VTA1-205ENST00000620996 PTCH1Q13635 1447 aa12.9□□□□□ -0.34
VTA1-205ENST00000620996 PLEKHG3A1L390 1219 aa12.9□□□□□ -0.34
VTA1-205ENST00000620996 TMPOP42166 694 aaKnown RBP12.9□□□□□ -0.34
VTA1-205ENST00000620996 PNNQ9H307 717 aaKnown RBP12.9□□□□□ -0.34
VTA1-205ENST00000620996 BCL2L13Q9BXK5 485 aa12.9□□□□□ -0.34
VTA1-205ENST00000620996 ANKRD26Q9UPS8 1709 aa12.89□□□□□ -0.35
VTA1-205ENST00000620996 TSR2Q969E8 191 aaKnown RBP12.89□□□□□ -0.35
VTA1-205ENST00000620996 ITSN1Q15811 1721 aa12.89□□□□□ -0.35
VTA1-205ENST00000620996 ZBTB7CA1YPR0 619 aa12.89□□□□□ -0.35
VTA1-205ENST00000620996 RBM19Q9Y4C8 960 aaKnown RBP12.89□□□□□ -0.35
VTA1-205ENST00000620996 MYH16Q9H6N6 1097 aa12.89□□□□□ -0.35
VTA1-205ENST00000620996 DIP2AQ14689 1571 aa12.88□□□□□ -0.35
VTA1-205ENST00000620996 ADAMTSL3P82987 1691 aa12.88□□□□□ -0.35
VTA1-205ENST00000620996 COL3A1P02461 1466 aaPredicted RBP12.88□□□□□ -0.35
VTA1-205ENST00000620996 DEKP35659 375 aaKnown RBP12.88□□□□□ -0.35
VTA1-205ENST00000620996 WDR63Q8IWG1 891 aa12.88□□□□□ -0.35
VTA1-205ENST00000620996 PLEKHF1Q96S99 279 aa12.88□□□□□ -0.35
VTA1-205ENST00000620996 USP6P35125 1406 aa12.88□□□□□ -0.35
VTA1-205ENST00000620996 NLRP6P59044 892 aa12.87□□□□□ -0.35
VTA1-205ENST00000620996 ESCO1Q5FWF5 840 aa12.87□□□□□ -0.35
VTA1-205ENST00000620996 TRMT2AQ8IZ69 625 aaKnown RBP12.87□□□□□ -0.35
VTA1-205ENST00000620996 IQSEC2Q5JU85 1478 aa12.87□□□□□ -0.35
VTA1-205ENST00000620996 EIF5BO60841 1220 aaKnown RBP12.87□□□□□ -0.35
VTA1-205ENST00000620996 FCHSD2O94868 740 aa12.86□□□□□ -0.35
VTA1-205ENST00000620996 LMOD2Q6P5Q4 547 aa12.86□□□□□ -0.35
VTA1-205ENST00000620996 ADGRB2O60241 1585 aa12.86□□□□□ -0.35
VTA1-205ENST00000620996 NPHP4O75161 1426 aaPredicted RBP12.86□□□□□ -0.35
VTA1-205ENST00000620996 PNPLA6Q8IY17 1366 aa12.86□□□□□ -0.35
VTA1-205ENST00000620996 AMPHP49418 695 aa12.86□□□□□ -0.35
VTA1-205ENST00000620996 ABTB2Q8N961 1025 aa12.86□□□□□ -0.35
VTA1-205ENST00000620996 PHACTR3Q96KR7 559 aa12.86□□□□□ -0.35
VTA1-205ENST00000620996 RSPH6AQ9H0K4 717 aa12.86□□□□□ -0.35
VTA1-205ENST00000620996 IL13P35225 146 aa12.85□□□□□ -0.35
VTA1-205ENST00000620996 THUMPD2Q9BTF0 503 aaKnown RBP12.85□□□□□ -0.35
VTA1-205ENST00000620996 PIK3R4Q99570 1358 aa12.85□□□□□ -0.35
VTA1-205ENST00000620996 CCDC27Q2M243 656 aa12.85□□□□□ -0.35
VTA1-205ENST00000620996 HSP90AB2PQ58FF8 381 aa12.85□□□□□ -0.35
VTA1-205ENST00000620996 PROSER2Q86WR7 435 aaPredicted RBP12.85□□□□□ -0.35
VTA1-205ENST00000620996 MAP2P11137 1827 aaKnown RBP12.85□□□□□ -0.35
VTA1-205ENST00000620996 XPCQ01831 940 aaPredicted RBP12.84□□□□□ -0.35
VTA1-205ENST00000620996 PHF8Q9UPP1 1060 aa12.84□□□□□ -0.35
VTA1-205ENST00000620996 TRIM35Q9UPQ4 493 aa12.84□□□□□ -0.35
VTA1-205ENST00000620996 MON2Q7Z3U7 1717 aa12.84□□□□□ -0.35
VTA1-205ENST00000620996 MSH5O43196 834 aa12.84□□□□□ -0.35
VTA1-205ENST00000620996 SULT6B1Q6IMI4 303 aa12.84□□□□□ -0.35
VTA1-205ENST00000620996 HSPA2P54652 639 aa12.84□□□□□ -0.35
VTA1-205ENST00000620996 PSME1Q06323 249 aa12.84□□□□□ -0.35
VTA1-205ENST00000620996 LTV1Q96GA3 475 aaPredicted RBP12.84□□□□□ -0.35
VTA1-205ENST00000620996 AATKQ6ZMQ8 1374 aa12.83□□□□□ -0.36
VTA1-205ENST00000620996 AEBP1Q8IUX7 1158 aa12.83□□□□□ -0.36
VTA1-205ENST00000620996 EXOSC9Q06265 439 aaKnown RBP12.83□□□□□ -0.36
VTA1-205ENST00000620996 EIF4A2Q14240 407 aaKnown RBP12.83□□□□□ -0.36
VTA1-205ENST00000620996 AKAP12Q02952 1782 aa12.83□□□□□ -0.36
VTA1-205ENST00000620996 TTC21AQ8NDW8 1320 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms