RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 BLMP54132 1417 aaPredicted RBP17.19■□□□□ 0.34
UPF3B-204ENST00000619445 POLR3AO14802 1390 aaPredicted RBP17.19■□□□□ 0.34
UPF3B-204ENST00000619445 PLEKHG5O94827 1062 aa17.18■□□□□ 0.34
UPF3B-204ENST00000619445 ZRANB1Q9UGI0 708 aa17.18■□□□□ 0.34
UPF3B-204ENST00000619445 BRWD3Q6RI45 1802 aa17.18■□□□□ 0.34
UPF3B-204ENST00000619445 TOPAZ1Q8N9V7 1692 aa17.18■□□□□ 0.34
UPF3B-204ENST00000619445 NRAPQ86VF7 1730 aa17.18■□□□□ 0.34
UPF3B-204ENST00000619445 PLEKHG3A1L390 1219 aa17.17■□□□□ 0.34
UPF3B-204ENST00000619445 SF3B2Q13435 895 aaKnown RBP17.17■□□□□ 0.34
UPF3B-204ENST00000619445 BTG4Q9NY30 223 aa17.17■□□□□ 0.34
UPF3B-204ENST00000619445 BRD4O60885 1362 aaPredicted RBP17.17■□□□□ 0.34
UPF3B-204ENST00000619445 CRYBG1Q9Y4K1 1723 aa17.17■□□□□ 0.34
UPF3B-204ENST00000619445 CENPJQ9HC77 1338 aaPredicted RBP17.17■□□□□ 0.34
UPF3B-204ENST00000619445 PRDM11Q9NQV5 511 aa17.16■□□□□ 0.34
UPF3B-204ENST00000619445 KRT27Q7Z3Y8 459 aa17.15■□□□□ 0.34
UPF3B-204ENST00000619445 NBPF8Q3BBV2 869 aa17.15■□□□□ 0.34
UPF3B-204ENST00000619445 ACEP12821 1306 aa17.14■□□□□ 0.33
UPF3B-204ENST00000619445 A0A0G2JS52 829 aa17.14■□□□□ 0.33
UPF3B-204ENST00000619445 MYT1Q01538 1121 aa17.14■□□□□ 0.33
UPF3B-204ENST00000619445 NBPF1Q3BBV0 1214 aa17.14■□□□□ 0.33
UPF3B-204ENST00000619445 SRPK2P78362 688 aaKnown RBP17.13■□□□□ 0.33
UPF3B-204ENST00000619445 PHRF1Q9P1Y6 1649 aaKnown RBP17.12■□□□□ 0.33
UPF3B-204ENST00000619445 SPATA31A5Q5VU36 1347 aa17.11■□□□□ 0.33
UPF3B-204ENST00000619445 SPATA31A7Q8IWB4 1347 aa17.11■□□□□ 0.33
UPF3B-204ENST00000619445 QRICH2Q9H0J4 1663 aa17.11■□□□□ 0.33
UPF3B-204ENST00000619445 FAM98CQ17RN3 349 aaKnown RBP17.11■□□□□ 0.33
UPF3B-204ENST00000619445 L3MBTL2Q969R5 705 aa17.11■□□□□ 0.33
UPF3B-204ENST00000619445 KIAA0232Q92628 1395 aa17.1■□□□□ 0.33
UPF3B-204ENST00000619445 PPIP5K1Q6PFW1 1433 aa17.1■□□□□ 0.33
UPF3B-204ENST00000619445 NLRP13Q86W25 1043 aa17.09■□□□□ 0.33
UPF3B-204ENST00000619445 ABTB2Q8N961 1025 aa17.09■□□□□ 0.33
UPF3B-204ENST00000619445 EVC2Q86UK5 1308 aa17.08■□□□□ 0.32
UPF3B-204ENST00000619445 CPDO75976 1380 aa17.08■□□□□ 0.32
UPF3B-204ENST00000619445 TRPM1Q7Z4N2 1603 aa17.08■□□□□ 0.32
UPF3B-204ENST00000619445 BAG6P46379 1132 aa17.07■□□□□ 0.32
UPF3B-204ENST00000619445 USP19O94966 1318 aa17.07■□□□□ 0.32
UPF3B-204ENST00000619445 THSD7AQ9UPZ6 1657 aa17.06■□□□□ 0.32
UPF3B-204ENST00000619445 EVA1CP58658 441 aa17.05■□□□□ 0.32
UPF3B-204ENST00000619445 ZC3H6P61129 1189 aaKnown RBP17.05■□□□□ 0.32
UPF3B-204ENST00000619445 SPATA31A1Q5TZJ5 1347 aa17.05■□□□□ 0.32
UPF3B-204ENST00000619445 ROCK2O75116 1388 aaKnown RBP17.05■□□□□ 0.32
UPF3B-204ENST00000619445 NRKQ7Z2Y5 1582 aa17.05■□□□□ 0.32
UPF3B-204ENST00000619445 RGPD1P0DJD0 1748 aa17.05■□□□□ 0.32
UPF3B-204ENST00000619445 CABP2Q9NPB3 220 aa17.04■□□□□ 0.32
UPF3B-204ENST00000619445 CHRNA2Q15822 529 aa17.03■□□□□ 0.32
UPF3B-204ENST00000619445 NUTM2GQ5VZR2 741 aa17.03■□□□□ 0.32
UPF3B-204ENST00000619445 STRN4Q9NRL3 753 aa17.03■□□□□ 0.32
UPF3B-204ENST00000619445 GCP02774 474 aa17.02■□□□□ 0.32
UPF3B-204ENST00000619445 USP6P35125 1406 aa17.02■□□□□ 0.32
UPF3B-204ENST00000619445 BARGINQ6ZT62 677 aa17.02■□□□□ 0.32
UPF3B-204ENST00000619445 SSH2Q76I76 1423 aa17.02■□□□□ 0.32
UPF3B-204ENST00000619445 DEFB132Q7Z7B7 95 aa17.02■□□□□ 0.32
UPF3B-204ENST00000619445 ZNF692Q9BU19 519 aaPredicted RBP17.02■□□□□ 0.32
UPF3B-204ENST00000619445 NEUROD1Q13562 356 aa17.02■□□□□ 0.31
UPF3B-204ENST00000619445 SIN3AQ96ST3 1273 aa17.02■□□□□ 0.31
UPF3B-204ENST00000619445 CABP1Q9NZU7 370 aa17.02■□□□□ 0.31
UPF3B-204ENST00000619445 THRAP3Q9Y2W1 955 aaKnown RBP17.02■□□□□ 0.31
UPF3B-204ENST00000619445 SRCAPQ6ZRS2 3230 aa17.01■□□□□ 0.31
UPF3B-204ENST00000619445 C11orf95C9JLR9 678 aaPredicted RBP17.01■□□□□ 0.31
UPF3B-204ENST00000619445 FAM196AQ6ZSG2 479 aa17.01■□□□□ 0.31
UPF3B-204ENST00000619445 LMO7Q8WWI1 1683 aa17■□□□□ 0.31
UPF3B-204ENST00000619445 DISP2A7MBM2 1401 aa17■□□□□ 0.31
UPF3B-204ENST00000619445 SBNO2Q9Y2G9 1366 aa16.99■□□□□ 0.31
UPF3B-204ENST00000619445 CAMTA1Q9Y6Y1 1673 aa16.99■□□□□ 0.31
UPF3B-204ENST00000619445 NLRP6P59044 892 aa16.99■□□□□ 0.31
UPF3B-204ENST00000619445 TCP11L2Q8N4U5 519 aa16.99■□□□□ 0.31
UPF3B-204ENST00000619445 PDE3BQ13370 1112 aa16.98■□□□□ 0.31
UPF3B-204ENST00000619445 TTC21AQ8NDW8 1320 aa16.97■□□□□ 0.31
UPF3B-204ENST00000619445 SLIT3O75094 1523 aa16.97■□□□□ 0.31
UPF3B-204ENST00000619445 AATKQ6ZMQ8 1374 aa16.96■□□□□ 0.31
UPF3B-204ENST00000619445 PARD3Q8TEW0 1356 aa16.96■□□□□ 0.31
UPF3B-204ENST00000619445 KCNH5Q8NCM2 988 aa16.96■□□□□ 0.31
UPF3B-204ENST00000619445 COL5A2P05997 1499 aaPredicted RBP16.95■□□□□ 0.3
UPF3B-204ENST00000619445 AKAP12Q02952 1782 aa16.95■□□□□ 0.3
UPF3B-204ENST00000619445 LARP1Q6PKG0 1096 aaKnown RBP16.95■□□□□ 0.3
UPF3B-204ENST00000619445 USP35Q9P2H5 1018 aa16.95■□□□□ 0.3
UPF3B-204ENST00000619445 TNS1Q9HBL0 1735 aaKnown RBP16.94■□□□□ 0.3
UPF3B-204ENST00000619445 CRB1P82279 1406 aa16.94■□□□□ 0.3
UPF3B-204ENST00000619445 TONSLQ96HA7 1378 aa16.94■□□□□ 0.3
UPF3B-204ENST00000619445 PIK3C2AO00443 1686 aa16.93■□□□□ 0.3
UPF3B-204ENST00000619445 SLC24A1O60721 1099 aa16.93■□□□□ 0.3
UPF3B-204ENST00000619445 TTC21BQ7Z4L5 1316 aa16.93■□□□□ 0.3
UPF3B-204ENST00000619445 LRP5O75197 1615 aa16.92■□□□□ 0.3
UPF3B-204ENST00000619445 CARD11Q9BXL7 1154 aa16.92■□□□□ 0.3
UPF3B-204ENST00000619445 PARP4Q9UKK3 1724 aaKnown RBP16.92■□□□□ 0.3
UPF3B-204ENST00000619445 CPSF1Q10570 1443 aaKnown RBP16.92■□□□□ 0.3
UPF3B-204ENST00000619445 EN1Q05925 392 aaPredicted RBP16.91■□□□□ 0.3
UPF3B-204ENST00000619445 FAM182BQ5T319 152 aa16.91■□□□□ 0.3
UPF3B-204ENST00000619445 KTN1Q86UP2 1357 aaKnown RBP16.91■□□□□ 0.3
UPF3B-204ENST00000619445 CDCA7Q9BWT1 371 aaPredicted RBP16.9■□□□□ 0.3
UPF3B-204ENST00000619445 ABCC6O95255 1503 aa16.9■□□□□ 0.3
UPF3B-204ENST00000619445 TRIM37O94972 964 aa16.89■□□□□ 0.3
UPF3B-204ENST00000619445 PUS7Q96PZ0 661 aaKnown RBP16.89■□□□□ 0.3
UPF3B-204ENST00000619445 MON2Q7Z3U7 1717 aa16.89■□□□□ 0.29
UPF3B-204ENST00000619445 ZBTB7CA1YPR0 619 aa16.89■□□□□ 0.29
UPF3B-204ENST00000619445 WDR17Q8IZU2 1322 aa16.88■□□□□ 0.29
UPF3B-204ENST00000619445 COL18A1P39060 1754 aa16.88■□□□□ 0.29
UPF3B-204ENST00000619445 APBA3O96018 575 aa16.88■□□□□ 0.29
UPF3B-204ENST00000619445 TOM1L2Q6ZVM7 507 aa16.88■□□□□ 0.29
UPF3B-204ENST00000619445 ARHGEF25Q86VW2 580 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms