RNA–Protein interactions for RNA: ENST00000618534.4

NEK3-208, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene NEK3, Length 2,414 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-208ENST00000618534 SENP3Q9H4L4 574 aaPredicted RBP25.85■■□□□ 1.73
NEK3-208ENST00000618534 ATF7IPQ6VMQ6 1270 aa25.85■■□□□ 1.73
NEK3-208ENST00000618534 DDX19BQ9UMR2 479 aa25.85■■□□□ 1.73
NEK3-208ENST00000618534 MFAP1P55081 439 aaKnown RBP25.84■■□□□ 1.73
NEK3-208ENST00000618534 SRPK2P78362 688 aaKnown RBP25.84■■□□□ 1.73
NEK3-208ENST00000618534 STK26Q9P289 416 aa25.84■■□□□ 1.73
NEK3-208ENST00000618534 C22orf23Q9BZE7 217 aa25.84■■□□□ 1.73
NEK3-208ENST00000618534 NOB1Q9ULX3 412 aaKnown RBP25.83■■□□□ 1.72
NEK3-208ENST00000618534 TMEM57Q8N5G2 664 aa25.8■■□□□ 1.72
NEK3-208ENST00000618534 IL16Q14005 1332 aa25.8■■□□□ 1.72
NEK3-208ENST00000618534 ANKRD26Q9UPS8 1709 aa25.8■■□□□ 1.72
NEK3-208ENST00000618534 FAM43AQ8N2R8 423 aa25.79■■□□□ 1.72
NEK3-208ENST00000618534 FYB1O15117 783 aa25.79■■□□□ 1.72
NEK3-208ENST00000618534 SMC5Q8IY18 1101 aa25.79■■□□□ 1.72
NEK3-208ENST00000618534 RIPK4P57078 832 aa25.78■■□□□ 1.72
NEK3-208ENST00000618534 IDI1Q13907 227 aa25.78■■□□□ 1.72
NEK3-208ENST00000618534 NPM1P06748 294 aaKnown RBP eCLIP25.77■■□□□ 1.72
NEK3-208ENST00000618534 CD163L1Q9NR16 1453 aa25.76■■□□□ 1.72
NEK3-208ENST00000618534 ZBTB40Q9NUA8 1239 aa25.76■■□□□ 1.71
NEK3-208ENST00000618534 MINK1Q8N4C8 1332 aaPredicted RBP25.76■■□□□ 1.71
NEK3-208ENST00000618534 PTPRMP28827 1452 aa25.76■■□□□ 1.71
NEK3-208ENST00000618534 L1TD1Q5T7N2 865 aaKnown RBP25.76■■□□□ 1.71
NEK3-208ENST00000618534 ATAD2Q6PL18 1390 aa25.75■■□□□ 1.71
NEK3-208ENST00000618534 MCM4P33991 863 aa25.75■■□□□ 1.71
NEK3-208ENST00000618534 TERF2IPQ9NYB0 399 aa25.75■■□□□ 1.71
NEK3-208ENST00000618534 MED14O60244 1454 aa25.75■■□□□ 1.71
NEK3-208ENST00000618534 ZFYVE9O95405 1425 aa25.74■■□□□ 1.71
NEK3-208ENST00000618534 KIF16BQ96L93 1317 aa25.74■■□□□ 1.71
NEK3-208ENST00000618534 RAPGEF3O95398 923 aa25.74■■□□□ 1.71
NEK3-208ENST00000618534 MYO5BQ9ULV0 1848 aa25.73■■□□□ 1.71
NEK3-208ENST00000618534 DIAPH1O60610 1272 aaKnown RBP25.73■■□□□ 1.71
NEK3-208ENST00000618534 CHMP5Q9NZZ3 219 aa25.73■■□□□ 1.71
NEK3-208ENST00000618534 PRAM1Q96QH2 718 aa25.72■■□□□ 1.71
NEK3-208ENST00000618534 DIP2CQ9Y2E4 1556 aa25.72■■□□□ 1.71
NEK3-208ENST00000618534 ARHGAP31Q2M1Z3 1444 aa25.71■■□□□ 1.71
NEK3-208ENST00000618534 CLTCQ00610 1675 aaKnown RBP25.71■■□□□ 1.71
NEK3-208ENST00000618534 IPO8O15397 1037 aaKnown RBP25.71■■□□□ 1.71
NEK3-208ENST00000618534 PNPLA6Q8IY17 1366 aa25.69■■□□□ 1.7
NEK3-208ENST00000618534 NUCB1Q02818 461 aa25.69■■□□□ 1.7
NEK3-208ENST00000618534 ARXQ96QS3 562 aa25.69■■□□□ 1.7
NEK3-208ENST00000618534 LRRC7Q96NW7 1537 aa25.68■■□□□ 1.7
NEK3-208ENST00000618534 HSCBQ8IWL3 235 aa25.68■■□□□ 1.7
NEK3-208ENST00000618534 LNPKQ9C0E8 428 aa25.68■■□□□ 1.7
NEK3-208ENST00000618534 ALDH1L2Q3SY69 923 aa25.67■■□□□ 1.7
NEK3-208ENST00000618534 YTHDC2Q9H6S0 1430 aaKnown RBP25.67■■□□□ 1.7
NEK3-208ENST00000618534 GZF1Q9H116 711 aaPredicted RBP25.67■■□□□ 1.7
NEK3-208ENST00000618534 PNNQ9H307 717 aaKnown RBP25.66■■□□□ 1.7
NEK3-208ENST00000618534 SLC52A1Q9NWF4 448 aa25.66■■□□□ 1.7
NEK3-208ENST00000618534 HDGFL2Q7Z4V5 671 aaPredicted RBP25.66■■□□□ 1.7
NEK3-208ENST00000618534 KIF20BQ96Q89 1820 aa25.66■■□□□ 1.7
NEK3-208ENST00000618534 TMEM131LA2VDJ0 1609 aa25.66■■□□□ 1.7
NEK3-208ENST00000618534 ZNF692Q9BU19 519 aaPredicted RBP25.65■■□□□ 1.7
NEK3-208ENST00000618534 FSD2A1L4K1 749 aa25.64■■□□□ 1.7
NEK3-208ENST00000618534 GOLGA6L3A6NEY3 463 aa25.64■■□□□ 1.7
NEK3-208ENST00000618534 CDC42BPGQ6DT37 1551 aa25.64■■□□□ 1.7
NEK3-208ENST00000618534 XRCC6P12956 609 aaKnown RBP eCLIP25.64■■□□□ 1.69
NEK3-208ENST00000618534 CHD1LQ86WJ1 897 aa25.64■■□□□ 1.69
NEK3-208ENST00000618534 RBM25P49756 843 aaKnown RBP25.63■■□□□ 1.69
NEK3-208ENST00000618534 FCHSD2O94868 740 aa25.63■■□□□ 1.69
NEK3-208ENST00000618534 PRKAR2BP31323 418 aa25.63■■□□□ 1.69
NEK3-208ENST00000618534 NCOA3Q9Y6Q9 1424 aa25.62■■□□□ 1.69
NEK3-208ENST00000618534 TRAK2O60296 914 aa25.62■■□□□ 1.69
NEK3-208ENST00000618534 CDK19Q9BWU1 502 aa25.62■■□□□ 1.69
NEK3-208ENST00000618534 RRAGDQ9NQL2 400 aaPredicted RBP25.62■■□□□ 1.69
NEK3-208ENST00000618534 CABP1Q9NZU7 370 aa25.62■■□□□ 1.69
NEK3-208ENST00000618534 FAM135BQ49AJ0 1406 aa25.62■■□□□ 1.69
NEK3-208ENST00000618534 NEO1Q92859 1461 aa25.62■■□□□ 1.69
NEK3-208ENST00000618534 RSPH6AQ9H0K4 717 aa25.62■■□□□ 1.69
NEK3-208ENST00000618534 PREX1Q8TCU6 1659 aa25.61■■□□□ 1.69
NEK3-208ENST00000618534 FBLN1P23142 703 aa25.61■■□□□ 1.69
NEK3-208ENST00000618534 ARHGEF40Q8TER5 1519 aa25.6■■□□□ 1.69
NEK3-208ENST00000618534 DDIT3P35638 169 aa25.58■■□□□ 1.69
NEK3-208ENST00000618534 PPIP5K1Q6PFW1 1433 aa25.58■■□□□ 1.69
NEK3-208ENST00000618534 BRPF1P55201 1214 aaPredicted RBP25.58■■□□□ 1.69
NEK3-208ENST00000618534 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.58■■□□□ 1.69
NEK3-208ENST00000618534 PANK2Q9BZ23 570 aa25.58■■□□□ 1.69
NEK3-208ENST00000618534 SNX21Q969T3 373 aa25.57■■□□□ 1.68
NEK3-208ENST00000618534 THUMPD2Q9BTF0 503 aaKnown RBP25.57■■□□□ 1.68
NEK3-208ENST00000618534 POLKQ9UBT6 870 aa25.57■■□□□ 1.68
NEK3-208ENST00000618534 BMP2KLQ5H9B9 411 aa25.57■■□□□ 1.68
NEK3-208ENST00000618534 C1orf115Q9H7X2 142 aa25.57■■□□□ 1.68
NEK3-208ENST00000618534 YEATS2Q9ULM3 1422 aa25.57■■□□□ 1.68
NEK3-208ENST00000618534 ALKQ9UM73 1620 aa25.56■■□□□ 1.68
NEK3-208ENST00000618534 ZBTB7BO15156 539 aaPredicted RBP25.56■■□□□ 1.68
NEK3-208ENST00000618534 PRKCSHP14314 528 aaPredicted RBP25.56■■□□□ 1.68
NEK3-208ENST00000618534 ZNF428Q96B54 188 aa25.56■■□□□ 1.68
NEK3-208ENST00000618534 ANKRD45Q5TZF3 282 aa25.56■■□□□ 1.68
NEK3-208ENST00000618534 PHACTR3Q96KR7 559 aa25.56■■□□□ 1.68
NEK3-208ENST00000618534 RICTORQ6R327 1708 aa25.56■■□□□ 1.68
NEK3-208ENST00000618534 EIF5BO60841 1220 aaKnown RBP25.55■■□□□ 1.68
NEK3-208ENST00000618534 DDX11L8A8MPP1 907 aa25.55■■□□□ 1.68
NEK3-208ENST00000618534 VAMP4O75379 141 aa25.55■■□□□ 1.68
NEK3-208ENST00000618534 HMOX1P09601 288 aa25.55■■□□□ 1.68
NEK3-208ENST00000618534 MRPL50Q8N5N7 158 aaKnown RBP25.55■■□□□ 1.68
NEK3-208ENST00000618534 NFE2L2Q16236 605 aa25.54■■□□□ 1.68
NEK3-208ENST00000618534 TSPYL6Q8N831 410 aa25.54■■□□□ 1.68
NEK3-208ENST00000618534 PTCH1Q13635 1447 aa25.54■■□□□ 1.68
NEK3-208ENST00000618534 PIK3R4Q99570 1358 aa25.53■■□□□ 1.68
NEK3-208ENST00000618534 GCC1Q96CN9 775 aa25.53■■□□□ 1.68
NEK3-208ENST00000618534 KIF2CQ99661 725 aa25.52■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms