RNA–Protein interactions for RNA: ENST00000614198.4

GGA3-221, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 3,438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-221ENST00000614198 ATP7BP35670 1465 aa13.1□□□□□ -0.31
GGA3-221ENST00000614198 ZNF142P52746 1687 aaPredicted RBP13.1□□□□□ -0.31
GGA3-221ENST00000614198 NKTRP30414 1462 aaKnown RBP13.1□□□□□ -0.31
GGA3-221ENST00000614198 ZBTB47Q9UFB7 747 aaPredicted RBP13.1□□□□□ -0.31
GGA3-221ENST00000614198 KNDC1Q76NI1 1749 aa13.1□□□□□ -0.31
GGA3-221ENST00000614198 NPHP4O75161 1426 aaPredicted RBP13.1□□□□□ -0.31
GGA3-221ENST00000614198 RRS1Q15050 365 aaKnown RBP13.1□□□□□ -0.31
GGA3-221ENST00000614198 NEUROD2Q15784 382 aa13.09□□□□□ -0.31
GGA3-221ENST00000614198 PKNOX2Q96KN3 472 aa13.09□□□□□ -0.31
GGA3-221ENST00000614198 RRP7AQ9Y3A4 280 aaKnown RBP13.09□□□□□ -0.31
GGA3-221ENST00000614198 WDR43Q15061 677 aaKnown RBP eCLIP13.08□□□□□ -0.32
GGA3-221ENST00000614198 DDX17Q92841 729 aaKnown RBP13.08□□□□□ -0.32
GGA3-221ENST00000614198 EMILIN1Q9Y6C2 1016 aa13.08□□□□□ -0.32
GGA3-221ENST00000614198 USP32Q8NFA0 1604 aa13.07□□□□□ -0.32
GGA3-221ENST00000614198 ZBED9Q6R2W3 1325 aa13.07□□□□□ -0.32
GGA3-221ENST00000614198 SIRT1Q96EB6 747 aa13.06□□□□□ -0.32
GGA3-221ENST00000614198 PUS7Q96PZ0 661 aaKnown RBP13.06□□□□□ -0.32
GGA3-221ENST00000614198 ORAI2Q96SN7 254 aa13.06□□□□□ -0.32
GGA3-221ENST00000614198 XRN1Q8IZH2 1706 aaKnown RBP13.06□□□□□ -0.32
GGA3-221ENST00000614198 CHD2O14647 1828 aaKnown RBP13.06□□□□□ -0.32
GGA3-221ENST00000614198 NGDNQ8NEJ9 315 aaKnown RBP13.06□□□□□ -0.32
GGA3-221ENST00000614198 NPC1L1Q9UHC9 1359 aa13.05□□□□□ -0.32
GGA3-221ENST00000614198 APAF1O14727 1248 aa13.05□□□□□ -0.32
GGA3-221ENST00000614198 DMRT2Q9Y5R5 561 aa13.05□□□□□ -0.32
GGA3-221ENST00000614198 CPSF1Q10570 1443 aaKnown RBP13.05□□□□□ -0.32
GGA3-221ENST00000614198 DIP2AQ14689 1571 aa13.05□□□□□ -0.32
GGA3-221ENST00000614198 PROSER2Q86WR7 435 aaPredicted RBP13.05□□□□□ -0.32
GGA3-221ENST00000614198 U2SURPO15042 1029 aaKnown RBP13.04□□□□□ -0.32
GGA3-221ENST00000614198 ESCO1Q5FWF5 840 aa13.04□□□□□ -0.32
GGA3-221ENST00000614198 USP35Q9P2H5 1018 aa13.04□□□□□ -0.32
GGA3-221ENST00000614198 NALCNQ8IZF0 1738 aa13.04□□□□□ -0.32
GGA3-221ENST00000614198 PTCH1Q13635 1447 aa13.03□□□□□ -0.32
GGA3-221ENST00000614198 SPINK5Q9NQ38 1064 aaPredicted RBP13.03□□□□□ -0.32
GGA3-221ENST00000614198 POLKQ9UBT6 870 aa13.03□□□□□ -0.32
GGA3-221ENST00000614198 LAS1LQ9Y4W2 734 aaKnown RBP13.03□□□□□ -0.32
GGA3-221ENST00000614198 FOXO3O43524 673 aa13.02□□□□□ -0.32
GGA3-221ENST00000614198 STRCP1A6NGW2 1772 aa13.02□□□□□ -0.33
GGA3-221ENST00000614198 U2AF1L5P0DN76 240 aaPredicted RBP13.02□□□□□ -0.33
GGA3-221ENST00000614198 U2AF1Q01081 240 aaKnown RBP eCLIP13.02□□□□□ -0.33
GGA3-221ENST00000614198 TTC21BQ7Z4L5 1316 aa13.01□□□□□ -0.33
GGA3-221ENST00000614198 LMTK3Q96Q04 1460 aa13.01□□□□□ -0.33
GGA3-221ENST00000614198 ZNF335Q9H4Z2 1342 aaPredicted RBP13.01□□□□□ -0.33
GGA3-221ENST00000614198 CDC42BPGQ6DT37 1551 aa13.01□□□□□ -0.33
GGA3-221ENST00000614198 NINLQ9Y2I6 1382 aa13□□□□□ -0.33
GGA3-221ENST00000614198 HMOX1P09601 288 aa13□□□□□ -0.33
GGA3-221ENST00000614198 MAP2P11137 1827 aaKnown RBP13□□□□□ -0.33
GGA3-221ENST00000614198 SHPRHQ149N8 1683 aa13□□□□□ -0.33
GGA3-221ENST00000614198 KIF20BQ96Q89 1820 aa13□□□□□ -0.33
GGA3-221ENST00000614198 PLEKHG3A1L390 1219 aa12.99□□□□□ -0.33
GGA3-221ENST00000614198 LMOD2Q6P5Q4 547 aa12.99□□□□□ -0.33
GGA3-221ENST00000614198 COG3Q96JB2 828 aa12.99□□□□□ -0.33
GGA3-221ENST00000614198 ZBTB7CA1YPR0 619 aa12.98□□□□□ -0.33
GGA3-221ENST00000614198 BLMP54132 1417 aaPredicted RBP12.98□□□□□ -0.33
GGA3-221ENST00000614198 EDC4Q6P2E9 1401 aaKnown RBP12.98□□□□□ -0.33
GGA3-221ENST00000614198 ADGRB2O60241 1585 aa12.98□□□□□ -0.33
GGA3-221ENST00000614198 ITSN1Q15811 1721 aa12.98□□□□□ -0.33
GGA3-221ENST00000614198 USP6P35125 1406 aa12.98□□□□□ -0.33
GGA3-221ENST00000614198 AKAP12Q02952 1782 aa12.97□□□□□ -0.33
GGA3-221ENST00000614198 TOPAZ1Q8N9V7 1692 aa12.97□□□□□ -0.33
GGA3-221ENST00000614198 POLR3AO14802 1390 aaPredicted RBP12.97□□□□□ -0.33
GGA3-221ENST00000614198 TMEM94Q12767 1356 aa12.97□□□□□ -0.33
GGA3-221ENST00000614198 STRCQ7RTU9 1775 aa12.97□□□□□ -0.33
GGA3-221ENST00000614198 HSP90AB2PQ58FF8 381 aa12.97□□□□□ -0.33
GGA3-221ENST00000614198 PHF8Q9UPP1 1060 aa12.97□□□□□ -0.33
GGA3-221ENST00000614198 MON2Q7Z3U7 1717 aa12.97□□□□□ -0.33
GGA3-221ENST00000614198 NLRP6P59044 892 aa12.96□□□□□ -0.33
GGA3-221ENST00000614198 ABTB2Q8N961 1025 aa12.96□□□□□ -0.33
GGA3-221ENST00000614198 NEFMP07197 916 aa12.96□□□□□ -0.33
GGA3-221ENST00000614198 ZNF692Q9BU19 519 aaPredicted RBP12.96□□□□□ -0.33
GGA3-221ENST00000614198 PIK3R4Q99570 1358 aa12.96□□□□□ -0.34
GGA3-221ENST00000614198 TCP11L2Q8N4U5 519 aa12.95□□□□□ -0.34
GGA3-221ENST00000614198 NSD2O96028 1365 aa12.94□□□□□ -0.34
GGA3-221ENST00000614198 PLIN1O60240 522 aa12.94□□□□□ -0.34
GGA3-221ENST00000614198 PSME1Q06323 249 aa12.94□□□□□ -0.34
GGA3-221ENST00000614198 CFAP53Q96M91 514 aa12.94□□□□□ -0.34
GGA3-221ENST00000614198 PODXL2Q9NZ53 605 aa12.94□□□□□ -0.34
GGA3-221ENST00000614198 NUDCQ9Y266 331 aa12.94□□□□□ -0.34
GGA3-221ENST00000614198 FMN2Q9NZ56 1722 aa12.94□□□□□ -0.34
GGA3-221ENST00000614198 AEBP1Q8IUX7 1158 aa12.94□□□□□ -0.34
GGA3-221ENST00000614198 DIAPH1O60610 1272 aaKnown RBP12.94□□□□□ -0.34
GGA3-221ENST00000614198 PHACTR3Q96KR7 559 aa12.94□□□□□ -0.34
GGA3-221ENST00000614198 RNF123Q5XPI4 1314 aa12.94□□□□□ -0.34
GGA3-221ENST00000614198 ADGRL3Q9HAR2 1447 aa12.93□□□□□ -0.34
GGA3-221ENST00000614198 LTV1Q96GA3 475 aaPredicted RBP12.93□□□□□ -0.34
GGA3-221ENST00000614198 ANKRD26Q9UPS8 1709 aa12.93□□□□□ -0.34
GGA3-221ENST00000614198 COL3A1P02461 1466 aaPredicted RBP12.93□□□□□ -0.34
GGA3-221ENST00000614198 SSH2Q76I76 1423 aa12.92□□□□□ -0.34
GGA3-221ENST00000614198 SMG6Q86US8 1419 aaKnown RBP12.92□□□□□ -0.34
GGA3-221ENST00000614198 NRKQ7Z2Y5 1582 aa12.92□□□□□ -0.34
GGA3-221ENST00000614198 THUMPD2Q9BTF0 503 aaKnown RBP12.91□□□□□ -0.34
GGA3-221ENST00000614198 MAP3K19Q56UN5 1328 aa12.91□□□□□ -0.34
GGA3-221ENST00000614198 CABLES1Q8TDN4 633 aa12.91□□□□□ -0.34
GGA3-221ENST00000614198 PIK3C2AO00443 1686 aa12.91□□□□□ -0.34
GGA3-221ENST00000614198 C19orf44Q9H6X5 657 aa12.91□□□□□ -0.34
GGA3-221ENST00000614198 PLEKHF1Q96S99 279 aa12.9□□□□□ -0.34
GGA3-221ENST00000614198 PRKAR2BP31323 418 aa12.9□□□□□ -0.34
GGA3-221ENST00000614198 WWC1Q8IX03 1113 aa12.9□□□□□ -0.34
GGA3-221ENST00000614198 BRPF3Q9ULD4 1205 aa12.9□□□□□ -0.34
GGA3-221ENST00000614198 IL13P35225 146 aa12.9□□□□□ -0.35
GGA3-221ENST00000614198 RUNDC1Q96C34 613 aa12.9□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms