RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, humanhuman

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-223ENST00000611659 MSNP26038 577 aaKnown RBP14.87□□□□□ -0.03
TPM3-223ENST00000611659 CCDC173Q0VFZ6 552 aa14.87□□□□□ -0.03
TPM3-223ENST00000611659 ABCA6Q8N139 1617 aa14.87□□□□□ -0.03
TPM3-223ENST00000611659 GAS2L2Q8NHY3 880 aa14.86□□□□□ -0.03
TPM3-223ENST00000611659 KIF2CQ99661 725 aa14.86□□□□□ -0.03
TPM3-223ENST00000611659 TRIM35Q9UPQ4 493 aa14.86□□□□□ -0.03
TPM3-223ENST00000611659 PTMSP20962 102 aa14.86□□□□□ -0.03
TPM3-223ENST00000611659 RIPK4P57078 832 aa14.86□□□□□ -0.03
TPM3-223ENST00000611659 MAP3K4Q9Y6R4 1608 aa14.85□□□□□ -0.03
TPM3-223ENST00000611659 BMP2KLQ5H9B9 411 aa14.85□□□□□ -0.03
TPM3-223ENST00000611659 KIF16BQ96L93 1317 aa14.85□□□□□ -0.03
TPM3-223ENST00000611659 RBM10P98175 930 aaKnown RBP14.85□□□□□ -0.03
TPM3-223ENST00000611659 TBC1D9Q6ZT07 1266 aa14.85□□□□□ -0.03
TPM3-223ENST00000611659 ZSCAN30Q86W11 494 aa14.85□□□□□ -0.03
TPM3-223ENST00000611659 NOS1P29475 1434 aa14.85□□□□□ -0.03
TPM3-223ENST00000611659 GGT6Q6P531 493 aa14.84□□□□□ -0.03
TPM3-223ENST00000611659 GGNBP2Q9H3C7 697 aa14.84□□□□□ -0.03
TPM3-223ENST00000611659 SBNO2Q9Y2G9 1366 aa14.84□□□□□ -0.03
TPM3-223ENST00000611659 CABP2Q9NPB3 220 aa14.84□□□□□ -0.03
TPM3-223ENST00000611659 MCTP1Q6DN14 999 aa14.83□□□□□ -0.03
TPM3-223ENST00000611659 ABCC1P33527 1531 aa14.83□□□□□ -0.04
TPM3-223ENST00000611659 CHD1O14646 1710 aa14.83□□□□□ -0.04
TPM3-223ENST00000611659 KIAA1210Q9ULL0 1709 aa14.83□□□□□ -0.04
TPM3-223ENST00000611659 BAG4O95429 457 aaKnown RBP14.83□□□□□ -0.04
TPM3-223ENST00000611659 MYOM2P54296 1465 aa14.82□□□□□ -0.04
TPM3-223ENST00000611659 CAVIN1Q6NZI2 390 aaKnown RBP14.82□□□□□ -0.04
TPM3-223ENST00000611659 PDCL3Q9H2J4 239 aa14.82□□□□□ -0.04
TPM3-223ENST00000611659 CD109Q6YHK3 1445 aa14.82□□□□□ -0.04
TPM3-223ENST00000611659 PLEKHF1Q96S99 279 aa14.82□□□□□ -0.04
TPM3-223ENST00000611659 KLHL40Q2TBA0 621 aa14.81□□□□□ -0.04
TPM3-223ENST00000611659 PPP1R9BQ96SB3 815 aa14.81□□□□□ -0.04
TPM3-223ENST00000611659 R3HCC1Q9Y3T6 440 aaKnown RBP14.81□□□□□ -0.04
TPM3-223ENST00000611659 ELL2O00472 640 aaPredicted RBP14.8□□□□□ -0.04
TPM3-223ENST00000611659 CALD1Q05682 793 aaKnown RBP14.8□□□□□ -0.04
TPM3-223ENST00000611659 EVC2Q86UK5 1308 aa14.8□□□□□ -0.04
TPM3-223ENST00000611659 ABCC11Q96J66 1382 aa14.8□□□□□ -0.04
TPM3-223ENST00000611659 TET3O43151 1660 aa14.8□□□□□ -0.04
TPM3-223ENST00000611659 FAM13BQ9NYF5 915 aa14.79□□□□□ -0.04
TPM3-223ENST00000611659 SHROOM2Q13796 1616 aa14.79□□□□□ -0.04
TPM3-223ENST00000611659 ARID3AQ99856 593 aa14.79□□□□□ -0.04
TPM3-223ENST00000611659 OFD1O75665 1012 aa14.79□□□□□ -0.04
TPM3-223ENST00000611659 NCBP3Q53F19 620 aaKnown RBP14.79□□□□□ -0.04
TPM3-223ENST00000611659 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.79□□□□□ -0.04
TPM3-223ENST00000611659 C14orf93Q9H972 538 aaKnown RBP14.79□□□□□ -0.04
TPM3-223ENST00000611659 GCC1Q96CN9 775 aa14.78□□□□□ -0.04
TPM3-223ENST00000611659 ZFYVE16Q7Z3T8 1539 aa14.78□□□□□ -0.04
TPM3-223ENST00000611659 SRPK2P78362 688 aaKnown RBP14.78□□□□□ -0.04
TPM3-223ENST00000611659 ANKRD36BQ8N2N9 1353 aa14.77□□□□□ -0.05
TPM3-223ENST00000611659 CDC45O75419 566 aa14.77□□□□□ -0.05
TPM3-223ENST00000611659 PPIP5K1Q6PFW1 1433 aa14.77□□□□□ -0.05
TPM3-223ENST00000611659 ZBTB7BO15156 539 aaPredicted RBP14.77□□□□□ -0.05
TPM3-223ENST00000611659 XPCQ01831 940 aaPredicted RBP14.77□□□□□ -0.05
TPM3-223ENST00000611659 ZSCAN23Q3MJ62 389 aa14.77□□□□□ -0.05
TPM3-223ENST00000611659 PKP1Q13835 747 aa14.76□□□□□ -0.05
TPM3-223ENST00000611659 STK26Q9P289 416 aa14.76□□□□□ -0.05
TPM3-223ENST00000611659 IL16Q14005 1332 aa14.76□□□□□ -0.05
TPM3-223ENST00000611659 ALDH1L2Q3SY69 923 aa14.76□□□□□ -0.05
TPM3-223ENST00000611659 THUMPD2Q9BTF0 503 aaKnown RBP14.76□□□□□ -0.05
TPM3-223ENST00000611659 DIAPH1O60610 1272 aaKnown RBP14.75□□□□□ -0.05
TPM3-223ENST00000611659 ADGRL1O94910 1474 aa14.75□□□□□ -0.05
TPM3-223ENST00000611659 PRPF40AO75400 957 aaKnown RBP14.75□□□□□ -0.05
TPM3-223ENST00000611659 RBSNQ9H1K0 784 aa14.75□□□□□ -0.05
TPM3-223ENST00000611659 RBM27Q9P2N5 1060 aaKnown RBP14.75□□□□□ -0.05
TPM3-223ENST00000611659 NSD2O96028 1365 aa14.74□□□□□ -0.05
TPM3-223ENST00000611659 PRIM1P49642 420 aaKnown RBP14.74□□□□□ -0.05
TPM3-223ENST00000611659 FOXD4L5Q5VV16 416 aaPredicted RBP14.74□□□□□ -0.05
TPM3-223ENST00000611659 FOXD4L4Q8WXT5 416 aaPredicted RBP14.74□□□□□ -0.05
TPM3-223ENST00000611659 ADGRB2O60241 1585 aa14.74□□□□□ -0.05
TPM3-223ENST00000611659 SIRT2Q8IXJ6 389 aa14.74□□□□□ -0.05
TPM3-223ENST00000611659 KIF1BO60333 1816 aa14.74□□□□□ -0.05
TPM3-223ENST00000611659 QRICH2Q9H0J4 1663 aa14.74□□□□□ -0.05
TPM3-223ENST00000611659 MYO3AQ8NEV4 1616 aa14.74□□□□□ -0.05
TPM3-223ENST00000611659 NUCB2P80303 420 aa14.73□□□□□ -0.05
TPM3-223ENST00000611659 ZBTB7CA1YPR0 619 aa14.73□□□□□ -0.05
TPM3-223ENST00000611659 APBB1O00213 710 aa14.73□□□□□ -0.05
TPM3-223ENST00000611659 GSPT1P15170 499 aaKnown RBP14.73□□□□□ -0.05
TPM3-223ENST00000611659 ZNF445P59923 1031 aa14.73□□□□□ -0.05
TPM3-223ENST00000611659 RABEP1Q15276 862 aa14.73□□□□□ -0.05
TPM3-223ENST00000611659 TSPYL6Q8N831 410 aa14.72□□□□□ -0.05
TPM3-223ENST00000611659 CHAMP1Q96JM3 812 aa14.72□□□□□ -0.05
TPM3-223ENST00000611659 CHMP4BQ9H444 224 aaKnown RBP14.72□□□□□ -0.05
TPM3-223ENST00000611659 LMBRD1Q9NUN5 540 aa14.72□□□□□ -0.05
TPM3-223ENST00000611659 DEPDC5O75140 1603 aa14.72□□□□□ -0.05
TPM3-223ENST00000611659 ZCCHC11Q5TAX3 1644 aaKnown RBP14.72□□□□□ -0.05
TPM3-223ENST00000611659 MROH2AA6NES4 1674 aa14.72□□□□□ -0.05
TPM3-223ENST00000611659 A0A1W2PP64 1363 aa14.72□□□□□ -0.05
TPM3-223ENST00000611659 PRKAR2BP31323 418 aa14.72□□□□□ -0.05
TPM3-223ENST00000611659 AK9Q5TCS8 1911 aa14.72□□□□□ -0.05
TPM3-223ENST00000611659 ATP7AQ04656 1500 aa14.72□□□□□ -0.05
TPM3-223ENST00000611659 IBTKQ9P2D0 1353 aaPredicted RBP14.72□□□□□ -0.05
TPM3-223ENST00000611659 CLEC17AQ6ZS10 378 aa14.72□□□□□ -0.05
TPM3-223ENST00000611659 CFAP74Q9C0B2 1584 aa14.71□□□□□ -0.05
TPM3-223ENST00000611659 FANCAO15360 1455 aa14.71□□□□□ -0.05
TPM3-223ENST00000611659 NRXN1Q9ULB1 1477 aa14.71□□□□□ -0.05
TPM3-223ENST00000611659 FBLN1P23142 703 aa14.71□□□□□ -0.05
TPM3-223ENST00000611659 ZGPATQ8N5A5 531 aaKnown RBP14.71□□□□□ -0.05
TPM3-223ENST00000611659 UQCRHLA0A096LP55 91 aa14.71□□□□□ -0.05
TPM3-223ENST00000611659 UQCRHP07919 91 aa14.71□□□□□ -0.05
TPM3-223ENST00000611659 HMOX1P09601 288 aa14.71□□□□□ -0.05
TPM3-223ENST00000611659 C16orf71Q8IYS4 520 aaPredicted RBP14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms