RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 FAM98CQ17RN3 349 aaKnown RBP9.22□□□□□ -0.93
CUX1-220ENST00000607092 PMFBP1Q8TBY8 1022 aa9.22□□□□□ -0.93
CUX1-220ENST00000607092 COL14A1Q05707 1796 aaKnown RBP9.22□□□□□ -0.93
CUX1-220ENST00000607092 TULP4Q9NRJ4 1543 aa9.21□□□□□ -0.93
CUX1-220ENST00000607092 WASLO00401 505 aaPredicted RBP9.21□□□□□ -0.94
CUX1-220ENST00000607092 PRDM11Q9NQV5 511 aa9.21□□□□□ -0.94
CUX1-220ENST00000607092 SPATA31A5Q5VU36 1347 aa9.21□□□□□ -0.94
CUX1-220ENST00000607092 SPATA31A7Q8IWB4 1347 aa9.21□□□□□ -0.94
CUX1-220ENST00000607092 DISP2A7MBM2 1401 aa9.21□□□□□ -0.94
CUX1-220ENST00000607092 PAK3O75914 559 aaPredicted RBP9.2□□□□□ -0.94
CUX1-220ENST00000607092 FAM196AQ6ZSG2 479 aa9.2□□□□□ -0.94
CUX1-220ENST00000607092 TRAK1Q9UPV9 953 aa9.2□□□□□ -0.94
CUX1-220ENST00000607092 ATP7BP35670 1465 aa9.2□□□□□ -0.94
CUX1-220ENST00000607092 RGPD1P0DJD0 1748 aa9.19□□□□□ -0.94
CUX1-220ENST00000607092 ABCA3Q99758 1704 aa9.19□□□□□ -0.94
CUX1-220ENST00000607092 BRWD3Q6RI45 1802 aa9.19□□□□□ -0.94
CUX1-220ENST00000607092 PLEKHG5O94827 1062 aa9.19□□□□□ -0.94
CUX1-220ENST00000607092 HRCP23327 699 aa9.19□□□□□ -0.94
CUX1-220ENST00000607092 HOXD11P31277 338 aaPredicted RBP9.19□□□□□ -0.94
CUX1-220ENST00000607092 MINK1Q8N4C8 1332 aaPredicted RBP9.19□□□□□ -0.94
CUX1-220ENST00000607092 ADGRB1O14514 1584 aa9.18□□□□□ -0.94
CUX1-220ENST00000607092 RGPD8O14715 1765 aaPredicted RBP9.17□□□□□ -0.94
CUX1-220ENST00000607092 BRD4O60885 1362 aaPredicted RBP9.17□□□□□ -0.94
CUX1-220ENST00000607092 DCAF8L1A6NGE4 600 aa9.17□□□□□ -0.94
CUX1-220ENST00000607092 PDE3BQ13370 1112 aa9.17□□□□□ -0.94
CUX1-220ENST00000607092 NBPF8Q3BBV2 869 aa9.17□□□□□ -0.94
CUX1-220ENST00000607092 NBPF14Q5TI25 921 aa9.17□□□□□ -0.94
CUX1-220ENST00000607092 DCAF11Q8TEB1 546 aa9.17□□□□□ -0.94
CUX1-220ENST00000607092 HIRIP3Q9BW71 556 aaPredicted RBP9.17□□□□□ -0.94
CUX1-220ENST00000607092 ITSN1Q15811 1721 aa9.17□□□□□ -0.94
CUX1-220ENST00000607092 NRAPQ86VF7 1730 aa9.17□□□□□ -0.94
CUX1-220ENST00000607092 ALS2Q96Q42 1657 aa9.16□□□□□ -0.94
CUX1-220ENST00000607092 SPATA31A1Q5TZJ5 1347 aa9.16□□□□□ -0.94
CUX1-220ENST00000607092 PSDA5PKW4 1024 aaPredicted RBP9.16□□□□□ -0.94
CUX1-220ENST00000607092 EVA1CP58658 441 aa9.16□□□□□ -0.94
CUX1-220ENST00000607092 EN1Q05925 392 aaPredicted RBP9.16□□□□□ -0.94
CUX1-220ENST00000607092 BARGINQ6ZT62 677 aa9.16□□□□□ -0.94
CUX1-220ENST00000607092 NUDT16Q96DE0 195 aaKnown RBP9.16□□□□□ -0.94
CUX1-220ENST00000607092 THRAP3Q9Y2W1 955 aaKnown RBP9.16□□□□□ -0.94
CUX1-220ENST00000607092 CCDC61Q9Y6R9 512 aa9.16□□□□□ -0.94
CUX1-220ENST00000607092 TRPM3Q9HCF6 1732 aaPredicted RBP9.16□□□□□ -0.94
CUX1-220ENST00000607092 KIAA0232Q92628 1395 aa9.15□□□□□ -0.94
CUX1-220ENST00000607092 PRR36Q9H6K5 1346 aa9.15□□□□□ -0.94
CUX1-220ENST00000607092 KDM2AQ9Y2K7 1162 aa9.15□□□□□ -0.94
CUX1-220ENST00000607092 POLR3AO14802 1390 aaPredicted RBP9.14□□□□□ -0.95
CUX1-220ENST00000607092 RAB3GAP2Q9H2M9 1393 aa9.14□□□□□ -0.95
CUX1-220ENST00000607092 THSD7AQ9UPZ6 1657 aa9.14□□□□□ -0.95
CUX1-220ENST00000607092 APBA3O96018 575 aa9.14□□□□□ -0.95
CUX1-220ENST00000607092 R3HDM1Q15032 1099 aaKnown RBP9.14□□□□□ -0.95
CUX1-220ENST00000607092 NLRP13Q86W25 1043 aa9.14□□□□□ -0.95
CUX1-220ENST00000607092 STRN4Q9NRL3 753 aa9.14□□□□□ -0.95
CUX1-220ENST00000607092 CPDO75976 1380 aa9.13□□□□□ -0.95
CUX1-220ENST00000607092 PLEKHG3A1L390 1219 aa9.13□□□□□ -0.95
CUX1-220ENST00000607092 SLC4A2P04920 1241 aa9.13□□□□□ -0.95
CUX1-220ENST00000607092 TCP11L2Q8N4U5 519 aa9.13□□□□□ -0.95
CUX1-220ENST00000607092 CAMKK2Q96RR4 588 aa9.13□□□□□ -0.95
CUX1-220ENST00000607092 TRIM37O94972 964 aa9.12□□□□□ -0.95
CUX1-220ENST00000607092 ZC3H6P61129 1189 aaKnown RBP9.12□□□□□ -0.95
CUX1-220ENST00000607092 ABTB2Q8N961 1025 aa9.12□□□□□ -0.95
CUX1-220ENST00000607092 CDK19Q9BWU1 502 aa9.12□□□□□ -0.95
CUX1-220ENST00000607092 SSH2Q76I76 1423 aa9.12□□□□□ -0.95
CUX1-220ENST00000607092 ACEP12821 1306 aa9.11□□□□□ -0.95
CUX1-220ENST00000607092 EZH2Q15910 746 aaKnown RBP9.11□□□□□ -0.95
CUX1-220ENST00000607092 USP19O94966 1318 aa9.1□□□□□ -0.95
CUX1-220ENST00000607092 CHRNA2Q15822 529 aa9.1□□□□□ -0.95
CUX1-220ENST00000607092 CDCA7Q9BWT1 371 aaPredicted RBP9.1□□□□□ -0.95
CUX1-220ENST00000607092 SPON1Q9HCB6 807 aa9.1□□□□□ -0.95
CUX1-220ENST00000607092 USP35Q9P2H5 1018 aa9.1□□□□□ -0.95
CUX1-220ENST00000607092 PPP1R1BQ9UD71 204 aaPredicted RBP9.1□□□□□ -0.95
CUX1-220ENST00000607092 CRYBG1Q9Y4K1 1723 aa9.1□□□□□ -0.95
CUX1-220ENST00000607092 PHRF1Q9P1Y6 1649 aaKnown RBP9.09□□□□□ -0.95
CUX1-220ENST00000607092 TNS1Q9HBL0 1735 aaKnown RBP9.09□□□□□ -0.95
CUX1-220ENST00000607092 OVOS2A0A0G2JMS6 1433 aa9.09□□□□□ -0.95
CUX1-220ENST00000607092 OVOS2A0A0J9YW53 1432 aa9.09□□□□□ -0.95
CUX1-220ENST00000607092 OVOS2Q6IE36 1432 aa9.09□□□□□ -0.95
CUX1-220ENST00000607092 GCP02774 474 aa9.09□□□□□ -0.95
CUX1-220ENST00000607092 SRPK2P78362 688 aaKnown RBP9.09□□□□□ -0.95
CUX1-220ENST00000607092 FAM182BQ5T319 152 aa9.09□□□□□ -0.95
CUX1-220ENST00000607092 NINLQ9Y2I6 1382 aa9.09□□□□□ -0.95
CUX1-220ENST00000607092 ARHGEF28Q8N1W1 1705 aaKnown RBP9.08□□□□□ -0.96
CUX1-220ENST00000607092 KIAA1210Q9ULL0 1709 aa9.08□□□□□ -0.96
CUX1-220ENST00000607092 CENPJQ9HC77 1338 aaPredicted RBP9.08□□□□□ -0.96
CUX1-220ENST00000607092 CRB1P82279 1406 aa9.08□□□□□ -0.96
CUX1-220ENST00000607092 PLSCR1O15162 318 aa9.08□□□□□ -0.96
CUX1-220ENST00000607092 NUTM2GQ5VZR2 741 aa9.07□□□□□ -0.96
CUX1-220ENST00000607092 LARP1Q6PKG0 1096 aaKnown RBP9.07□□□□□ -0.96
CUX1-220ENST00000607092 KCNH5Q8NCM2 988 aa9.07□□□□□ -0.96
CUX1-220ENST00000607092 AATKQ6ZMQ8 1374 aa9.07□□□□□ -0.96
CUX1-220ENST00000607092 NRKQ7Z2Y5 1582 aa9.07□□□□□ -0.96
CUX1-220ENST00000607092 TOPAZ1Q8N9V7 1692 aa9.07□□□□□ -0.96
CUX1-220ENST00000607092 PPIP5K1Q6PFW1 1433 aa9.06□□□□□ -0.96
CUX1-220ENST00000607092 KCNQ2O43526 872 aa9.06□□□□□ -0.96
CUX1-220ENST00000607092 YY1P25490 414 aa9.06□□□□□ -0.96
CUX1-220ENST00000607092 NLRP6P59044 892 aa9.06□□□□□ -0.96
CUX1-220ENST00000607092 DDB1Q16531 1140 aa9.06□□□□□ -0.96
CUX1-220ENST00000607092 ZNF692Q9BU19 519 aaPredicted RBP9.06□□□□□ -0.96
CUX1-220ENST00000607092 CAMTA1Q9Y6Y1 1673 aa9.06□□□□□ -0.96
CUX1-220ENST00000607092 COL5A2P05997 1499 aaPredicted RBP9.05□□□□□ -0.96
CUX1-220ENST00000607092 BCL11BQ9C0K0 894 aaPredicted RBP9.05□□□□□ -0.96
CUX1-220ENST00000607092 EVC2Q86UK5 1308 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms